| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
Click here to switch to the map view.
The map label for this gene is surA [H]
Identifier: 119899176
GI number: 119899176
Start: 3166514
End: 3167833
Strand: Reverse
Name: surA [H]
Synonym: azo2886
Alternate gene names: 119899176
Gene position: 3167833-3166514 (Counterclockwise)
Preceding gene: 119899177
Following gene: 119899175
Centisome position: 72.39
GC content: 70.3
Gene sequence:
>1320_bases ATGAATCGATTCCCGCTTCGCCCGCGTTCCCTTTTCGTCGCCCTGGTTGCCTGCAGCGCGCTCGCGCTGCCGGTGCGGGC CGCGGTCCAGCCGGTTGCAGTCGACCGCATCATCGCGGTGGTCAACAACGAAGTGATCACCGCGGTGCAACTGCGCGACC GCGTCGACCAGACCACCCGCCAGCTGCAGCGCCAAGGCGTCCAGCTGCCGCCCGCCGACGTGCTCGAACGCCAGCTTCTC GAGCGCCTGATCGTCGAGCGCGCGCAATTGCAGCTCGCGCGCGACAGCTCGCTGCGGGTGGACGACGCCACGCTCGAGCG GGCGATCGGCCGTATCGCCGAAAACAACAAGATGAACACCACCCAGCTGCGCGCAGCGCTCGAGCGCGACGGCGTGGCCT GGGACCGCTTCCGCAACGAGATCCGTACCGAAATCCTGCTGTCCCGCCTGCGCGAGCGCGAGGTCGACGCCAAGATCGTC GTGACCGACGCCGAGGTCGACAACTTCCTGACGTCCAACCCCGACGCCTTTTCGGGTGAGGAATTCCACGTCGCCCACAT CCTGCTGCGGGCGCCCGAAGGGGCCACGCCGGAGCAGATCGACCGCCTGCGCCAGCGCGCCGACACCGTGATCAACCGGC TGCGCAATGGCGAGGACTTCGCGCGCGTCGCGGCCGATTCGTCGGATGCGCCGGACGGCATCAGCGGCGGCGACCTCGGC TGGCGCCAGCGCGACCGCCTGCCCGCGCTGTATTCCGACGCGGTGCGCGACCTCCGTCCGGGCGAGCTGTCGCCGCTGAT GCGCAGCGCCGCCGGCCTGCACCTGGTCAAGCTGGTCGACCGCCGCGGTGGCGCCGCGGCCGGACCGCAGCGCCTGGAGC AGACCCGCGCCCGCCACATCCTGATCAAGACCTCCGCGGTGCTGTCCGACGCCGAGGCCGAAGCGCGCCTGCTCGGGCTG CGCGAACGCGTCGTCGCCGGCGGGGCCGACTTCGGCGAGCTGGCGAAGGCCAGTTCCGCCGATCTCTCCGCGGCCAAGGG CGGCGACCTGGGCTGGGTCAATCCGGGCGATACGGTGCCCGAGTTCGAGCGCGCGATGAACGTGCTGAAGCCGGGCGAGG TCAGCCCTCCGGTGCGTTCGCCGTTCGGCTGGCATCTGATCCAGGTGCTCGAACGGCGCCAGCAGGACGTCACCGACGAG CGCAAGCGCATGGCAGCGCGCAACATCCTGCGCGAACGCAAGGCCGAAGAGGCCTACGAGGACTGGGTGCGCCAGCTGCG CGACAGCACCTACGTCGAATACCGCCTCGAAAACGACTGA
Upstream 100 bases:
>100_bases CGCAGCGTGCCGGGCTATGGCAAGATCAACGACCCCGCCGCCAACCGCGTGTTCGGCATCGAATGACGCAGCACGCGCCT CCATCTGCCTGACCAAGCTC
Downstream 100 bases:
>100_bases TCCCATGGCCGCGCTTCCGGTCCTGGCCGTCACCAGCGGCGAACCCGCCGGCGTCGGGCCCGAACTGTGCGCGCGGCTGC TTGCGCGCGACTGGCCGGCG
Product: putative peptidyl-prolyl cis-trans isomerase
Products: NA
Alternate protein names: Peptidyl-prolyl cis-trans isomerase surA; PPIase surA; Rotamase surA [H]
Number of amino acids: Translated: 439; Mature: 439
Protein sequence:
>439_residues MNRFPLRPRSLFVALVACSALALPVRAAVQPVAVDRIIAVVNNEVITAVQLRDRVDQTTRQLQRQGVQLPPADVLERQLL ERLIVERAQLQLARDSSLRVDDATLERAIGRIAENNKMNTTQLRAALERDGVAWDRFRNEIRTEILLSRLREREVDAKIV VTDAEVDNFLTSNPDAFSGEEFHVAHILLRAPEGATPEQIDRLRQRADTVINRLRNGEDFARVAADSSDAPDGISGGDLG WRQRDRLPALYSDAVRDLRPGELSPLMRSAAGLHLVKLVDRRGGAAAGPQRLEQTRARHILIKTSAVLSDAEAEARLLGL RERVVAGGADFGELAKASSADLSAAKGGDLGWVNPGDTVPEFERAMNVLKPGEVSPPVRSPFGWHLIQVLERRQQDVTDE RKRMAARNILRERKAEEAYEDWVRQLRDSTYVEYRLEND
Sequences:
>Translated_439_residues MNRFPLRPRSLFVALVACSALALPVRAAVQPVAVDRIIAVVNNEVITAVQLRDRVDQTTRQLQRQGVQLPPADVLERQLL ERLIVERAQLQLARDSSLRVDDATLERAIGRIAENNKMNTTQLRAALERDGVAWDRFRNEIRTEILLSRLREREVDAKIV VTDAEVDNFLTSNPDAFSGEEFHVAHILLRAPEGATPEQIDRLRQRADTVINRLRNGEDFARVAADSSDAPDGISGGDLG WRQRDRLPALYSDAVRDLRPGELSPLMRSAAGLHLVKLVDRRGGAAAGPQRLEQTRARHILIKTSAVLSDAEAEARLLGL RERVVAGGADFGELAKASSADLSAAKGGDLGWVNPGDTVPEFERAMNVLKPGEVSPPVRSPFGWHLIQVLERRQQDVTDE RKRMAARNILRERKAEEAYEDWVRQLRDSTYVEYRLEND >Mature_439_residues MNRFPLRPRSLFVALVACSALALPVRAAVQPVAVDRIIAVVNNEVITAVQLRDRVDQTTRQLQRQGVQLPPADVLERQLL ERLIVERAQLQLARDSSLRVDDATLERAIGRIAENNKMNTTQLRAALERDGVAWDRFRNEIRTEILLSRLREREVDAKIV VTDAEVDNFLTSNPDAFSGEEFHVAHILLRAPEGATPEQIDRLRQRADTVINRLRNGEDFARVAADSSDAPDGISGGDLG WRQRDRLPALYSDAVRDLRPGELSPLMRSAAGLHLVKLVDRRGGAAAGPQRLEQTRARHILIKTSAVLSDAEAEARLLGL RERVVAGGADFGELAKASSADLSAAKGGDLGWVNPGDTVPEFERAMNVLKPGEVSPPVRSPFGWHLIQVLERRQQDVTDE RKRMAARNILRERKAEEAYEDWVRQLRDSTYVEYRLEND
Specific function: Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act
COG id: COG0760
COG function: function code O; Parvulin-like peptidyl-prolyl isomerase
Gene ontology:
Cell location: Periplasm. Note=Is capable of associating with the outer membrane (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PpiC domains [H]
Homologues:
Organism=Escherichia coli, GI1786238, Length=370, Percent_Identity=33.7837837837838, Blast_Score=229, Evalue=2e-61,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000297 - InterPro: IPR023058 - InterPro: IPR023034 - InterPro: IPR015391 - InterPro: IPR008880 [H]
Pfam domain/function: PF00639 Rotamase; PF09312 SurA_N [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 49083; Mature: 49083
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: PS01096 PPIC_PPIASE_1 ; PS50198 PPIC_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRFPLRPRSLFVALVACSALALPVRAAVQPVAVDRIIAVVNNEVITAVQLRDRVDQTTR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QLQRQGVQLPPADVLERQLLERLIVERAQLQLARDSSLRVDDATLERAIGRIAENNKMNT HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCH TQLRAALERDGVAWDRFRNEIRTEILLSRLREREVDAKIVVTDAEVDNFLTSNPDAFSGE HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCCC EFHVAHILLRAPEGATPEQIDRLRQRADTVINRLRNGEDFARVAADSSDAPDGISGGDLG CEEHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCC WRQRDRLPALYSDAVRDLRPGELSPLMRSAAGLHLVKLVDRRGGAAAGPQRLEQTRARHI CHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEE LIKTSAVLSDAEAEARLLGLRERVVAGGADFGELAKASSADLSAAKGGDLGWVNPGDTVP EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH EFERAMNVLKPGEVSPPVRSPFGWHLIQVLERRQQDVTDERKRMAARNILRERKAEEAYE HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH DWVRQLRDSTYVEYRLEND HHHHHHCCCCEEEEEECCC >Mature Secondary Structure MNRFPLRPRSLFVALVACSALALPVRAAVQPVAVDRIIAVVNNEVITAVQLRDRVDQTTR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QLQRQGVQLPPADVLERQLLERLIVERAQLQLARDSSLRVDDATLERAIGRIAENNKMNT HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCH TQLRAALERDGVAWDRFRNEIRTEILLSRLREREVDAKIVVTDAEVDNFLTSNPDAFSGE HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCCCCC EFHVAHILLRAPEGATPEQIDRLRQRADTVINRLRNGEDFARVAADSSDAPDGISGGDLG CEEHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCC WRQRDRLPALYSDAVRDLRPGELSPLMRSAAGLHLVKLVDRRGGAAAGPQRLEQTRARHI CHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEE LIKTSAVLSDAEAEARLLGLRERVVAGGADFGELAKASSADLSAAKGGDLGWVNPGDTVP EEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH EFERAMNVLKPGEVSPPVRSPFGWHLIQVLERRQQDVTDERKRMAARNILRERKAEEAYE HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH DWVRQLRDSTYVEYRLEND HHHHHHCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA