| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is pdxA
Identifier: 119899175
GI number: 119899175
Start: 3165517
End: 3166509
Strand: Reverse
Name: pdxA
Synonym: azo2885
Alternate gene names: 119899175
Gene position: 3166509-3165517 (Counterclockwise)
Preceding gene: 119899176
Following gene: 119899174
Centisome position: 72.36
GC content: 72.81
Gene sequence:
>993_bases ATGGCCGCGCTTCCGGTCCTGGCCGTCACCAGCGGCGAACCCGCCGGCGTCGGGCCCGAACTGTGCGCGCGGCTGCTTGC GCGCGACTGGCCGGCGCGACTGGTCGTGCTGGGCGACGCCGACCTCATCGCCGCGCGCGCTGCGGCGGTGGGCAGCCCGA TAGCGGTCCGGCACTACAGCCGCGGCCAGGCCCAGGCCGCCGGCGTGCTCGAGGTGCTCCACATTCCACTCGCCGAACCG AGCGATGCGGGTCGCCTGGCGGTGGGCAACGCGCGCTACGTGCTGGCGCTGCTCGACCGTGCGCTCGCCGGCTGCGTCGG CGGCGAGTTTGCCGGCATGGTCACCGCGCCGGTGCACAAGGGCGTGATCTGCGAGTCCGGTATCGCGTTCTCCGGTCATA CCGAATATCTCGCCGAACATACCGCGACGCCGCTGGTCGTGATGATGCTGGTCGGCGGCGGCATGCGCGTCGCGCTCGCC ACCACGCATCTGCCACTGGCCGCGGTGTCGGCGGCGATCACGCGGCCGGTGCTCGAACAGACGCTGCGCATCCTTCACGC CGACCTGGTGCAACGCTTCGGCATCGCCGCACCCCGCATCCTGGTGGCGGGCCTCAACCCGCACGCGGGCGAGGGTGGTC ACATGGGGCGCGAGGAAATCGAGGTCATCACCCCGGTACTGGACCGCCTGCGCGCCGAAGGCCTGCAACTCGTCGGCCCG CTGCCGGCCGACACCCTGTTCGCGCCGCACACGCTGGCGCACGGCGACGCGGTGCTGGCGATGTATCACGACCAGGGCCT GCCGGTGCTCAAGCACGCCAGCTTCGGCGGCGGCGTCAACGTCACGCTCGGTCTGCCGGTGATCCGCACTTCGGTCGACC ACGGCACGGCGCTCGACCTTGCCGGCAGCGGTCGCGCCGACCCCGGCAGCCTGTACGCCGCGGTCGAGCTGGCCGTGTCG ATGGCCGAGGCCCGTGCCCGCCAGCCGCGCTGA
Upstream 100 bases:
>100_bases ATCCTGCGCGAACGCAAGGCCGAAGAGGCCTACGAGGACTGGGTGCGCCAGCTGCGCGACAGCACCTACGTCGAATACCG CCTCGAAAACGACTGATCCC
Downstream 100 bases:
>100_bases GCGGCGTTCGAGGAATTTCATGCAAGACCGCGAAACCGACGGCCACCGCGCCAGAAAGCGCTTCGGCCAGAACTTCCTGT CCGACCCCAACATCATCCGC
Product: 4-hydroxythreonine-4-phosphate dehydrogenase
Products: NA
Alternate protein names: 4-(phosphohydroxy)-L-threonine dehydrogenase
Number of amino acids: Translated: 330; Mature: 329
Protein sequence:
>330_residues MAALPVLAVTSGEPAGVGPELCARLLARDWPARLVVLGDADLIAARAAAVGSPIAVRHYSRGQAQAAGVLEVLHIPLAEP SDAGRLAVGNARYVLALLDRALAGCVGGEFAGMVTAPVHKGVICESGIAFSGHTEYLAEHTATPLVVMMLVGGGMRVALA TTHLPLAAVSAAITRPVLEQTLRILHADLVQRFGIAAPRILVAGLNPHAGEGGHMGREEIEVITPVLDRLRAEGLQLVGP LPADTLFAPHTLAHGDAVLAMYHDQGLPVLKHASFGGGVNVTLGLPVIRTSVDHGTALDLAGSGRADPGSLYAAVELAVS MAEARARQPR
Sequences:
>Translated_330_residues MAALPVLAVTSGEPAGVGPELCARLLARDWPARLVVLGDADLIAARAAAVGSPIAVRHYSRGQAQAAGVLEVLHIPLAEP SDAGRLAVGNARYVLALLDRALAGCVGGEFAGMVTAPVHKGVICESGIAFSGHTEYLAEHTATPLVVMMLVGGGMRVALA TTHLPLAAVSAAITRPVLEQTLRILHADLVQRFGIAAPRILVAGLNPHAGEGGHMGREEIEVITPVLDRLRAEGLQLVGP LPADTLFAPHTLAHGDAVLAMYHDQGLPVLKHASFGGGVNVTLGLPVIRTSVDHGTALDLAGSGRADPGSLYAAVELAVS MAEARARQPR >Mature_329_residues AALPVLAVTSGEPAGVGPELCARLLARDWPARLVVLGDADLIAARAAAVGSPIAVRHYSRGQAQAAGVLEVLHIPLAEPS DAGRLAVGNARYVLALLDRALAGCVGGEFAGMVTAPVHKGVICESGIAFSGHTEYLAEHTATPLVVMMLVGGGMRVALAT THLPLAAVSAAITRPVLEQTLRILHADLVQRFGIAAPRILVAGLNPHAGEGGHMGREEIEVITPVLDRLRAEGLQLVGPL PADTLFAPHTLAHGDAVLAMYHDQGLPVLKHASFGGGVNVTLGLPVIRTSVDHGTALDLAGSGRADPGSLYAAVELAVSM AEARARQPR
Specific function: Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
COG id: COG1995
COG function: function code H; Pyridoxal phosphate biosynthesis protein
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pdxA family
Homologues:
Organism=Escherichia coli, GI1786237, Length=318, Percent_Identity=58.8050314465409, Blast_Score=367, Evalue=1e-103,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): PDXA_AZOSB (A1K9J6)
Other databases:
- EMBL: AM406670 - RefSeq: YP_934388.1 - ProteinModelPortal: A1K9J6 - SMR: A1K9J6 - STRING: A1K9J6 - GeneID: 4609107 - GenomeReviews: AM406670_GR - KEGG: azo:azo2885 - eggNOG: COG1995 - HOGENOM: HBG451136 - OMA: NPANAAY - PhylomeDB: A1K9J6 - ProtClustDB: PRK00232 - BioCyc: ASP62928:AZO2885-MONOMER - GO: GO:0005737 - HAMAP: MF_00536 - InterPro: IPR005255 - TIGRFAMs: TIGR00557
Pfam domain/function: PF04166 PdxA
EC number: =1.1.1.262
Molecular weight: Translated: 33929; Mature: 33798
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: BINDING 133-133 BINDING 134-134 BINDING 271-271 BINDING 280-280 BINDING 289-289
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAALPVLAVTSGEPAGVGPELCARLLARDWPARLVVLGDADLIAARAAAVGSPIAVRHYS CCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEEECC RGQAQAAGVLEVLHIPLAEPSDAGRLAVGNARYVLALLDRALAGCVGGEFAGMVTAPVHK CCCHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCCC GVICESGIAFSGHTEYLAEHTATPLVVMMLVGGGMRVALATTHLPLAAVSAAITRPVLEQ CEEECCCCEECCCHHHHHHHCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHH TLRILHADLVQRFGIAAPRILVAGLNPHAGEGGHMGREEIEVITPVLDRLRAEGLQLVGP HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECC LPADTLFAPHTLAHGDAVLAMYHDQGLPVLKHASFGGGVNVTLGLPVIRTSVDHGTALDL CCCCCCCCCCEECCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCEEEECCCCCCEEEE AGSGRADPGSLYAAVELAVSMAEARARQPR CCCCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AALPVLAVTSGEPAGVGPELCARLLARDWPARLVVLGDADLIAARAAAVGSPIAVRHYS CCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEEEEECC RGQAQAAGVLEVLHIPLAEPSDAGRLAVGNARYVLALLDRALAGCVGGEFAGMVTAPVHK CCCHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCCC GVICESGIAFSGHTEYLAEHTATPLVVMMLVGGGMRVALATTHLPLAAVSAAITRPVLEQ CEEECCCCEECCCHHHHHHHCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHH TLRILHADLVQRFGIAAPRILVAGLNPHAGEGGHMGREEIEVITPVLDRLRAEGLQLVGP HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECC LPADTLFAPHTLAHGDAVLAMYHDQGLPVLKHASFGGGVNVTLGLPVIRTSVDHGTALDL CCCCCCCCCCEECCCCEEEEEEECCCCCEEEECCCCCCEEEEECCCEEEECCCCCCEEEE AGSGRADPGSLYAAVELAVSMAEARARQPR CCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA