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The map label for this gene is sigX [C]

Identifier: 119899147

GI number: 119899147

Start: 3138878

End: 3139468

Strand: Direct

Name: sigX [C]

Synonym: azo2857

Alternate gene names: 119899147

Gene position: 3138878-3139468 (Clockwise)

Preceding gene: 119899146

Following gene: 119899148

Centisome position: 71.73

GC content: 65.65

Gene sequence:

>591_bases
ATGAACCAGCCGGTGCCCGACCTGTTGCTGGGCGAATTCCGCCCGCAGATGCTGAAGTTCGCCCGCCTGCAGCTGCAGGA
CGGCGCCGCAGCAGAAGACGTGGTGCATGACGCCATCAGCGCCGCGCTTGAAGGGGTCAACCGCTTTTCCGGCCGCGCCG
CGCTCAAGACCTGGATCTTCGCGATTCTTCGCCACAAGATCGTGGACGCCCTGCGCGAGCGCGGCCGCACCGTGCAGATT
TCCAGCCTGGAAAAGGACGAGGCCGACATGGACGAAGCCTTCGATGCGCTGTTTGCTGCCAACGCCCACTGGCATCCCGC
CAGCCGCCCGCGCGACTGGGGCGACCCGGAAGAAACGCTGGCCCAGCGCCAGTTCTGGCAGGTGTTCGAAACCTGCCTGG
AGCTGCTGCCGGCGAATACCGCCAGGGTGTTCATGATGCGGGAGTTCCTCGGTTTCGAAACCCCGGAGATCTGCCGCAAC
CTCGACATCTCCACCAGCAACTGCCATGTCATCCTGCACCGCGCCCGCGCCGGCCTGAGACAGTGCCTGGAACGCGGCTG
GTTCAACCCGGAGGTCCGCAGCGCATGCTGA

Upstream 100 bases:

>100_bases
CGGGCCGGCTGAGCGTGGATGCGGCGATACGCCGCCGTTTCAGCCACTTGCCGCAGGCTGCCGGCCCTAGAATGACATCC
ACTTCGTCCCTAGAGCCGTC

Downstream 100 bases:

>100_bases
CGTGCAAGGAAGCCACCCACCTCATCTCCGACGCGCTCGATCGCCCGCTGTCGTGGCGCGAACGGCTGAAACTGCGCGCC
CACCTCGCACTGTGCAGCGG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MNQPVPDLLLGEFRPQMLKFARLQLQDGAAAEDVVHDAISAALEGVNRFSGRAALKTWIFAILRHKIVDALRERGRTVQI
SSLEKDEADMDEAFDALFAANAHWHPASRPRDWGDPEETLAQRQFWQVFETCLELLPANTARVFMMREFLGFETPEICRN
LDISTSNCHVILHRARAGLRQCLERGWFNPEVRSAC

Sequences:

>Translated_196_residues
MNQPVPDLLLGEFRPQMLKFARLQLQDGAAAEDVVHDAISAALEGVNRFSGRAALKTWIFAILRHKIVDALRERGRTVQI
SSLEKDEADMDEAFDALFAANAHWHPASRPRDWGDPEETLAQRQFWQVFETCLELLPANTARVFMMREFLGFETPEICRN
LDISTSNCHVILHRARAGLRQCLERGWFNPEVRSAC
>Mature_196_residues
MNQPVPDLLLGEFRPQMLKFARLQLQDGAAAEDVVHDAISAALEGVNRFSGRAALKTWIFAILRHKIVDALRERGRTVQI
SSLEKDEADMDEAFDALFAANAHWHPASRPRDWGDPEETLAQRQFWQVFETCLELLPANTARVFMMREFLGFETPEICRN
LDISTSNCHVILHRARAGLRQCLERGWFNPEVRSAC

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014289
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22360; Mature: 22360

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQPVPDLLLGEFRPQMLKFARLQLQDGAAAEDVVHDAISAALEGVNRFSGRAALKTWIF
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AILRHKIVDALRERGRTVQISSLEKDEADMDEAFDALFAANAHWHPASRPRDWGDPEETL
HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
AQRQFWQVFETCLELLPANTARVFMMREFLGFETPEICRNLDISTSNCHVILHRARAGLR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHH
QCLERGWFNPEVRSAC
HHHHCCCCCCHHHCCC
>Mature Secondary Structure
MNQPVPDLLLGEFRPQMLKFARLQLQDGAAAEDVVHDAISAALEGVNRFSGRAALKTWIF
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
AILRHKIVDALRERGRTVQISSLEKDEADMDEAFDALFAANAHWHPASRPRDWGDPEETL
HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHH
AQRQFWQVFETCLELLPANTARVFMMREFLGFETPEICRNLDISTSNCHVILHRARAGLR
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHH
QCLERGWFNPEVRSAC
HHHHCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]