Click here to switch to the map view.

The map label for this gene is hlyU [H]

Identifier: 119899099

GI number: 119899099

Start: 3092165

End: 3092641

Strand: Direct

Name: hlyU [H]

Synonym: azo2809

Alternate gene names: 119899099

Gene position: 3092165-3092641 (Clockwise)

Preceding gene: 119899093

Following gene: 119899100

Centisome position: 70.66

GC content: 61.22

Gene sequence:

>477_bases
ATGGGAAATCGGATCCGGTTGAATGATGAACGAAGGCCTGGGCACAGCACGCTGCCGCGCGCATGGCAAAATCATGCGCC
TGCCCAAGGCGAGCAAGAGACAGGGCCGATATTTTATACTAACGACTTTCGCTCTCCGGGCCTTCCCGTGAACAAAGACA
ACATCCTCACGCTGATCGACAAGCATGAGCACATCGAAACCGCGGCGCGCGCGCTGAAGGCCATCGCACACCCGCTGCGG
CTTAAGATCCTGTGCGTGCTCGGCGAAGGCGAAGCCTGCGTGCAGGATATCGTCGAGGCGGTGGGCACCTCGCAGAGCAA
TATCTCCCAGCATCTGGCCATCCTTCGCGACAAGGGCGTGCTGCAGACCCGCAAGGACGCCAACCGCGTTTATTACCGCG
TGGGCGACCAGCGCACGCTGCAGCTCATCGTGCTGATGCGCGAAGTCTTCTGCGGCGTCGCGCCCGGCATCGACTGA

Upstream 100 bases:

>100_bases
GCCCACCCCGAGTTCGGTGAGGTCGACGTCGGTCCAGCCGGTGAAGCGGTTTTCCTTGTTCCAGGTGGATTCACCGTGGC
GAAGCAGGACGATCTTGTAC

Downstream 100 bases:

>100_bases
ACGCGCCCATCGATCAACCCAACCGGAGCTTTTCCTTGGAATTCCTGCAACAGAACTGGCACTGGGCCGCGCTTGCCGCC
GCAAGCGGCGCCTGGCTGCT

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MGNRIRLNDERRPGHSTLPRAWQNHAPAQGEQETGPIFYTNDFRSPGLPVNKDNILTLIDKHEHIETAARALKAIAHPLR
LKILCVLGEGEACVQDIVEAVGTSQSNISQHLAILRDKGVLQTRKDANRVYYRVGDQRTLQLIVLMREVFCGVAPGID

Sequences:

>Translated_158_residues
MGNRIRLNDERRPGHSTLPRAWQNHAPAQGEQETGPIFYTNDFRSPGLPVNKDNILTLIDKHEHIETAARALKAIAHPLR
LKILCVLGEGEACVQDIVEAVGTSQSNISQHLAILRDKGVLQTRKDANRVYYRVGDQRTLQLIVLMREVFCGVAPGID
>Mature_157_residues
GNRIRLNDERRPGHSTLPRAWQNHAPAQGEQETGPIFYTNDFRSPGLPVNKDNILTLIDKHEHIETAARALKAIAHPLRL
KILCVLGEGEACVQDIVEAVGTSQSNISQHLAILRDKGVLQTRKDANRVYYRVGDQRTLQLIVLMREVFCGVAPGID

Specific function: Represses an operon that comprises itself, XF_0764, XF_0765, XF_0766 and blh. Binds to a palindromic AT-rich sequence spanning the -10 region of the blh promoter and blocks transcription of the operon [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789021, Length=87, Percent_Identity=37.9310344827586, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 17638; Mature: 17507

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNRIRLNDERRPGHSTLPRAWQNHAPAQGEQETGPIFYTNDFRSPGLPVNKDNILTLID
CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEC
KHEHIETAARALKAIAHPLRLKILCVLGEGEACVQDIVEAVGTSQSNISQHLAILRDKGV
CHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
LQTRKDANRVYYRVGDQRTLQLIVLMREVFCGVAPGID
HHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GNRIRLNDERRPGHSTLPRAWQNHAPAQGEQETGPIFYTNDFRSPGLPVNKDNILTLID
CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEC
KHEHIETAARALKAIAHPLRLKILCVLGEGEACVQDIVEAVGTSQSNISQHLAILRDKGV
CHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
LQTRKDANRVYYRVGDQRTLQLIVLMREVFCGVAPGID
HHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]