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The map label for this gene is yafC [H]

Identifier: 119898891

GI number: 119898891

Start: 2885097

End: 2885993

Strand: Direct

Name: yafC [H]

Synonym: azo2600

Alternate gene names: 119898891

Gene position: 2885097-2885993 (Clockwise)

Preceding gene: 119898889

Following gene: 119898895

Centisome position: 65.93

GC content: 74.02

Gene sequence:

>897_bases
ATGGCGGGCTTGCAGGCTTTTCTGGCCTTCGTCGAAACCGTGAAGCGCGGCAGCTTCGCCGCCGCGGCACGCAGCCTGGG
GCTGTCTGCCTCCACGGTGGCGAAGAGCGTCGCGCGGCTGGAGGCCGATCTCGGCCTGCGGCTCTTCCATCGCAGCACGC
GGCAGGTGGTGCTGACCACCGAGGGCGAGGAGCTTTACCAGCGCTGCAGCCGCATTGCCGACGAAATCGAGGCCCTGCAC
GACGAAGCGGCCGGTGCGCGCGCCCGACCGAGCGGCACGCTGCGGCTGAGCGCGCCGGTGGTGCTGGGCCGCCAGCGCGT
GGTGCCCGCGCTTGCCGAGCTGCGCCGCCGCCATCCACAGCTGGGGGTGGAGCTGGAACTGGCCGACCGCCAGGTGGATG
TGCTGGCCGACCGCCTGGACGGTGCGCTGCGGGTCGGCCCGCTGGCGGATTCGGCGCTGGCCGCGCGGCGCGTGGGCGAG
CACCACATCGTCACGGTTGCGGCGCCGGCCTATCTCGCCCGCCGCGGCACGCCGGGCACGCCCGAGGAACTCGCCCCGCA
CGACTGCCTGCTGTTCCGCAGCCCGTCGAGCGGACGGACGCGGCCGTGGGCCTTCGCGGGCGGCGTTACCGCAACACTGG
GCGATGCGGCAACGCTCGCGATCAACGACGGCGAGGCGCTGGTGGCGGCCGCCTGTGCCGGCATGGGCCTGGCGCAGGTG
CCGGACTACATGGTCGCCGAGGCGATCGCCCGCGGCGCGCTGGTGGAAGTGCTGGCGGACCGGCGCCCACCGCCGCTGCC
GATCTCGCTGGTCTATCCGTCGGCGCGCCAGCCGCCACCGCGGCTGCGCGCCTTCATCGAGCTGCTGTGCGGGCCGATGG
CGCCGGTGGTGAATTGA

Upstream 100 bases:

>100_bases
GGCGACGCGGTGAGCGCAGTGTCCGCCTCCTCAACTACCGAAAGAAGTGCGCGCCATGTCGTAACATTGCCGACACTTTT
TCCGCAATGAGGGCAGCACG

Downstream 100 bases:

>100_bases
AGTCGCGAGCGCTCAGGCCAGCTCGATCTCCACGATGCCGTCGACAACGCGCAGCGGGTAGCTGTCGAGCGTGCATTCCT
CGCCCTGCCGGCATTCGCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MAGLQAFLAFVETVKRGSFAAAARSLGLSASTVAKSVARLEADLGLRLFHRSTRQVVLTTEGEELYQRCSRIADEIEALH
DEAAGARARPSGTLRLSAPVVLGRQRVVPALAELRRRHPQLGVELELADRQVDVLADRLDGALRVGPLADSALAARRVGE
HHIVTVAAPAYLARRGTPGTPEELAPHDCLLFRSPSSGRTRPWAFAGGVTATLGDAATLAINDGEALVAAACAGMGLAQV
PDYMVAEAIARGALVEVLADRRPPPLPISLVYPSARQPPPRLRAFIELLCGPMAPVVN

Sequences:

>Translated_298_residues
MAGLQAFLAFVETVKRGSFAAAARSLGLSASTVAKSVARLEADLGLRLFHRSTRQVVLTTEGEELYQRCSRIADEIEALH
DEAAGARARPSGTLRLSAPVVLGRQRVVPALAELRRRHPQLGVELELADRQVDVLADRLDGALRVGPLADSALAARRVGE
HHIVTVAAPAYLARRGTPGTPEELAPHDCLLFRSPSSGRTRPWAFAGGVTATLGDAATLAINDGEALVAAACAGMGLAQV
PDYMVAEAIARGALVEVLADRRPPPLPISLVYPSARQPPPRLRAFIELLCGPMAPVVN
>Mature_297_residues
AGLQAFLAFVETVKRGSFAAAARSLGLSASTVAKSVARLEADLGLRLFHRSTRQVVLTTEGEELYQRCSRIADEIEALHD
EAAGARARPSGTLRLSAPVVLGRQRVVPALAELRRRHPQLGVELELADRQVDVLADRLDGALRVGPLADSALAARRVGEH
HIVTVAAPAYLARRGTPGTPEELAPHDCLLFRSPSSGRTRPWAFAGGVTATLGDAATLAINDGEALVAAACAGMGLAQVP
DYMVAEAIARGALVEVLADRRPPPLPISLVYPSARQPPPRLRAFIELLCGPMAPVVN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=283, Percent_Identity=38.1625441696113, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI145693193, Length=302, Percent_Identity=32.7814569536424, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=31.7567567567568, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=31.9444444444444, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=31.1188811188811, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=30.7692307692308, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=31.3793103448276, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1788706, Length=292, Percent_Identity=25.6849315068493, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1789173, Length=257, Percent_Identity=27.6264591439689, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788481, Length=260, Percent_Identity=28.8461538461538, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082132, Length=295, Percent_Identity=24.7457627118644, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787601, Length=117, Percent_Identity=29.9145299145299, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790262, Length=246, Percent_Identity=27.6422764227642, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1786448, Length=254, Percent_Identity=25.5905511811024, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31524; Mature: 31393

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLQAFLAFVETVKRGSFAAAARSLGLSASTVAKSVARLEADLGLRLFHRSTRQVVLTT
CCHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
EGEELYQRCSRIADEIEALHDEAAGARARPSGTLRLSAPVVLGRQRVVPALAELRRRHPQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCHHHHHHHHHHHHHHCCC
LGVELELADRQVDVLADRLDGALRVGPLADSALAARRVGEHHIVTVAAPAYLARRGTPGT
CCEEEEECCHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCEEEEEECHHHHHHCCCCCC
PEELAPHDCLLFRSPSSGRTRPWAFAGGVTATLGDAATLAINDGEALVAAACAGMGLAQV
HHHCCCCCEEEEECCCCCCCCCEEEECCCEEECCCEEEEEECCCCHHHHHHHHCCCHHHC
PDYMVAEAIARGALVEVLADRRPPPLPISLVYPSARQPPPRLRAFIELLCGPMAPVVN
CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AGLQAFLAFVETVKRGSFAAAARSLGLSASTVAKSVARLEADLGLRLFHRSTRQVVLTT
CHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
EGEELYQRCSRIADEIEALHDEAAGARARPSGTLRLSAPVVLGRQRVVPALAELRRRHPQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCHHHHHHHHHHHHHHCCC
LGVELELADRQVDVLADRLDGALRVGPLADSALAARRVGEHHIVTVAAPAYLARRGTPGT
CCEEEEECCHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCEEEEEECHHHHHHCCCCCC
PEELAPHDCLLFRSPSSGRTRPWAFAGGVTATLGDAATLAINDGEALVAAACAGMGLAQV
HHHCCCCCEEEEECCCCCCCCCEEEECCCEEECCCEEEEEECCCCHHHHHHHHCCCHHHC
PDYMVAEAIARGALVEVLADRRPPPLPISLVYPSARQPPPRLRAFIELLCGPMAPVVN
CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]