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The map label for this gene is yeaM [H]

Identifier: 119898865

GI number: 119898865

Start: 2853125

End: 2853910

Strand: Direct

Name: yeaM [H]

Synonym: azo2574

Alternate gene names: 119898865

Gene position: 2853125-2853910 (Clockwise)

Preceding gene: 119898861

Following gene: 119898869

Centisome position: 65.2

GC content: 70.1

Gene sequence:

>786_bases
ATGCCACGGCCGATTTTTGAACTTCCGCCCCGTCCGCAGCCGACGACGCAAGACCCGATCTCGGTGCTGGTGCGCGAGCC
GCCACCGGATTCGATCATTCCGTGGCACAGCCATCCCTGGGGCCAGCTCGCGTACCCGGTAAGCGGCGCGGTATGCATGG
ACGTGCCGGGCAGCCGCTGGCTGGTGCCGCCTTTTCGTGCGCTGTGGGTGCCGCCGGGCGTTGAGCACCAGCAGAGCATG
CTCGGCCATGTCCGGCTGCGGGTCGTGCACGTGGCCGAGGGCTGCGCGGCGCTGCCCGAATCGCACTGCGCGGTGCTGGA
GATCACGCCGCTGCTGCGCGAACTGATCGAAGCCCTACTGCCGCGCCCGCCCCAAAGCGAACGTCGGACGCAGATCCAGG
CGCTGCTGCTGACCGAGCTGAGCCAGGCGCGCACGCTGAACCTGCGCCTGCCGCAGCCGAGCGACCGTCGCCTTGCCGCG
CTATGCGAAGCGTTGATGGCCGACCCCGCGGACAACGCGCCGCTGACCGAATGGGCGCGGCGGGTGGGTGCCAGCGGACG
CACGCTGGCGCGCCTGTTCCAGAGCGAGATGGGGATGAGCTTCGGGCTGTGGCGCCAGCAGGTGCGGCTGACCCACGCCA
CGGTACTGGTCGCCCAGGGCCGGCCTTACGCGGAGATTGCGGCCGAACTCGGCTATGCCAGTCCGAGCGCGTTTTCGGCG
ATGTTCCGCCGCGCTTTCGGCTGCTCGCCGCGAGCCTTCTACGCCGCCGGCGCGTCGCCGAAATAA

Upstream 100 bases:

>100_bases
TGGGTCATCAGCGGCTCCTTGCGACAAAAGAAGGCAAACCGATGATAATCCGGCGATCGTTTGGCAAATATGCGCGAGCC
GGACAACTACTATCGAGAAC

Downstream 100 bases:

>100_bases
GGCCGGCACGGCGACCGCAAAGGCCGCGGGACGACGCGCCCGCGCAGGGGCTCAGGGTTTGCGCTGCAGCCTGCGCAGCG
CGGTGGCGGCGGCGTTCATT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MPRPIFELPPRPQPTTQDPISVLVREPPPDSIIPWHSHPWGQLAYPVSGAVCMDVPGSRWLVPPFRALWVPPGVEHQQSM
LGHVRLRVVHVAEGCAALPESHCAVLEITPLLRELIEALLPRPPQSERRTQIQALLLTELSQARTLNLRLPQPSDRRLAA
LCEALMADPADNAPLTEWARRVGASGRTLARLFQSEMGMSFGLWRQQVRLTHATVLVAQGRPYAEIAAELGYASPSAFSA
MFRRAFGCSPRAFYAAGASPK

Sequences:

>Translated_261_residues
MPRPIFELPPRPQPTTQDPISVLVREPPPDSIIPWHSHPWGQLAYPVSGAVCMDVPGSRWLVPPFRALWVPPGVEHQQSM
LGHVRLRVVHVAEGCAALPESHCAVLEITPLLRELIEALLPRPPQSERRTQIQALLLTELSQARTLNLRLPQPSDRRLAA
LCEALMADPADNAPLTEWARRVGASGRTLARLFQSEMGMSFGLWRQQVRLTHATVLVAQGRPYAEIAAELGYASPSAFSA
MFRRAFGCSPRAFYAAGASPK
>Mature_260_residues
PRPIFELPPRPQPTTQDPISVLVREPPPDSIIPWHSHPWGQLAYPVSGAVCMDVPGSRWLVPPFRALWVPPGVEHQQSML
GHVRLRVVHVAEGCAALPESHCAVLEITPLLRELIEALLPRPPQSERRTQIQALLLTELSQARTLNLRLPQPSDRRLAAL
CEALMADPADNAPLTEWARRVGASGRTLARLFQSEMGMSFGLWRQQVRLTHATVLVAQGRPYAEIAAELGYASPSAFSAM
FRRAFGCSPRAFYAAGASPK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=228, Percent_Identity=34.2105263157895, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28803; Mature: 28672

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPIFELPPRPQPTTQDPISVLVREPPPDSIIPWHSHPWGQLAYPVSGAVCMDVPGSRW
CCCCCCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCE
LVPPFRALWVPPGVEHQQSMLGHVRLRVVHVAEGCAALPESHCAVLEITPLLRELIEALL
ECCCHHHEECCCCCCHHHHHHHHHHHHEEEEHHHHHHCCCCCEEEEEHHHHHHHHHHHHC
PRPPQSERRTQIQALLLTELSQARTLNLRLPQPSDRRLAALCEALMADPADNAPLTEWAR
CCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH
RVGASGRTLARLFQSEMGMSFGLWRQQVRLTHATVLVAQGRPYAEIAAELGYASPSAFSA
HHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCCCCHHHHHH
MFRRAFGCSPRAFYAAGASPK
HHHHHHCCCCCCEECCCCCCC
>Mature Secondary Structure 
PRPIFELPPRPQPTTQDPISVLVREPPPDSIIPWHSHPWGQLAYPVSGAVCMDVPGSRW
CCCCCCCCCCCCCCCCCCHHEEEECCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCE
LVPPFRALWVPPGVEHQQSMLGHVRLRVVHVAEGCAALPESHCAVLEITPLLRELIEALL
ECCCHHHEECCCCCCHHHHHHHHHHHHEEEEHHHHHHCCCCCEEEEEHHHHHHHHHHHHC
PRPPQSERRTQIQALLLTELSQARTLNLRLPQPSDRRLAALCEALMADPADNAPLTEWAR
CCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH
RVGASGRTLARLFQSEMGMSFGLWRQQVRLTHATVLVAQGRPYAEIAAELGYASPSAFSA
HHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCCCCHHHHHH
MFRRAFGCSPRAFYAAGASPK
HHHHHHCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]