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The map label for this gene is pnbR [H]

Identifier: 119898815

GI number: 119898815

Start: 2790194

End: 2791156

Strand: Direct

Name: pnbR [H]

Synonym: azo2524

Alternate gene names: 119898815

Gene position: 2790194-2791156 (Clockwise)

Preceding gene: 119898809

Following gene: 119898816

Centisome position: 63.76

GC content: 71.34

Gene sequence:

>963_bases
ATGAGCAAATTCGATCGATCTGCCGCGGCGGCGCCCTCGCCCACGCCCGACCACACCCATCTCGACGGCCATCTGCTGGC
GCTGCTGATCGCGGTAACGGAAGAAGGCTCGATCACCCGCGCCGCCGAACGCCTGGGCGTCACCCAGTCCGCCGTGTCGC
ACCTGCTCGGCAAGCTGCGCGCCATCGTCGGCGATCCCTTGTTCGTCAAATCGGGGCGCGGCATCGTCGCCACCGCGCGT
GCCGAAGCGCTGGCGGTGCAGGCGCGGGTGCTGCTGGAAGACATGCGCCGCTTCGCCACCGCCCCGGCCTTCGACCCCGC
GGCGCTGCGCACCACCTTCACCATTGCCGCCAACGACTTCCAGCGCGACCTGCTGCTGCCGCGCCTGCTCGCCCGCCTGC
GCGCCGCCGCGCCCGGCGTGGCGCTCAGGGTGATCCCCTCCGACATCCCCACGCCGGAAATGCTGCGCGACGCCCACTGC
CACCTCGCGATCTCGCCGCGCCCGCCGGACGCCAGCGACATCCTGCACAAGCGCCTGTTCGAGGACAGCTACCAGGTGTT
CTACGACGCCGCGGTACGCGAGGCGCCCGCCTCGCTGGCCGACTACCTCGCCGCCGAGCACGTCACCGTGGTGTATGAGC
CGCGCCGAGCACTGGATTTCGACCAAGGCCTCGCCACCCGCGGCATCGAACGCCGCTTCGTCGCCACCGTCCCCGGCTTC
GCCGGCATTCCGTCGTTCCTGCGCGGCAGCGCCCTGCTCGCCACCGTCCCCGGCCTGCTGCGCAGCAGCCTGATGCGCGA
CTTCGCCAGCTGCGAACTGCCTCTCACCGCGCCACCGCTGCCGATGTACGCGATCTGGCACCTGCGCGACCGGCACGATC
CGGTGCATTGCTGGTTGCGGGCGGAGCTGGAGGCGGTGGTGGGGGAAGTGGGGAGTGGGGGTGCGATGCGGTCGGCGGTT
TGA

Upstream 100 bases:

>100_bases
GCCGTGTGGCCATCCGCCTCTCCTCGTCCTTGTTGTGAGTGGGGTTATCAGTATCGGCGGCTGGACTTCACGGATAAACA
CAGGGAAACTCATTCCAATC

Downstream 100 bases:

>100_bases
CGCAGAAGCCCCTCCAGAGCCAGTCGTATGGCCGCGTGGCGGCAAATAGCGGGGGAGTCGGCAACTCAGCCTAAGCGACA
GTCGGCCTTATCGACCTACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MSKFDRSAAAAPSPTPDHTHLDGHLLALLIAVTEEGSITRAAERLGVTQSAVSHLLGKLRAIVGDPLFVKSGRGIVATAR
AEALAVQARVLLEDMRRFATAPAFDPAALRTTFTIAANDFQRDLLLPRLLARLRAAAPGVALRVIPSDIPTPEMLRDAHC
HLAISPRPPDASDILHKRLFEDSYQVFYDAAVREAPASLADYLAAEHVTVVYEPRRALDFDQGLATRGIERRFVATVPGF
AGIPSFLRGSALLATVPGLLRSSLMRDFASCELPLTAPPLPMYAIWHLRDRHDPVHCWLRAELEAVVGEVGSGGAMRSAV

Sequences:

>Translated_320_residues
MSKFDRSAAAAPSPTPDHTHLDGHLLALLIAVTEEGSITRAAERLGVTQSAVSHLLGKLRAIVGDPLFVKSGRGIVATAR
AEALAVQARVLLEDMRRFATAPAFDPAALRTTFTIAANDFQRDLLLPRLLARLRAAAPGVALRVIPSDIPTPEMLRDAHC
HLAISPRPPDASDILHKRLFEDSYQVFYDAAVREAPASLADYLAAEHVTVVYEPRRALDFDQGLATRGIERRFVATVPGF
AGIPSFLRGSALLATVPGLLRSSLMRDFASCELPLTAPPLPMYAIWHLRDRHDPVHCWLRAELEAVVGEVGSGGAMRSAV
>Mature_319_residues
SKFDRSAAAAPSPTPDHTHLDGHLLALLIAVTEEGSITRAAERLGVTQSAVSHLLGKLRAIVGDPLFVKSGRGIVATARA
EALAVQARVLLEDMRRFATAPAFDPAALRTTFTIAANDFQRDLLLPRLLARLRAAAPGVALRVIPSDIPTPEMLRDAHCH
LAISPRPPDASDILHKRLFEDSYQVFYDAAVREAPASLADYLAAEHVTVVYEPRRALDFDQGLATRGIERRFVATVPGFA
GIPSFLRGSALLATVPGLLRSSLMRDFASCELPLTAPPLPMYAIWHLRDRHDPVHCWLRAELEAVVGEVGSGGAMRSAV

Specific function: Regulates the expression of the naphthalene (nahA-F) and salicylate (nahG-M) metabolism genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=298, Percent_Identity=25.8389261744966, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790147, Length=314, Percent_Identity=26.1146496815287, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34605; Mature: 34474

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFDRSAAAAPSPTPDHTHLDGHLLALLIAVTEEGSITRAAERLGVTQSAVSHLLGKLR
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
AIVGDPLFVKSGRGIVATARAEALAVQARVLLEDMRRFATAPAFDPAALRTTFTIAANDF
HHHCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCHH
QRDLLLPRLLARLRAAAPGVALRVIPSDIPTPEMLRDAHCHLAISPRPPDASDILHKRLF
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCEEEECCCCCCHHHHHHHHHH
EDSYQVFYDAAVREAPASLADYLAAEHVTVVYEPRRALDFDQGLATRGIERRFVATVPGF
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCHHCCHHHHCCHHHHEEECCCC
AGIPSFLRGSALLATVPGLLRSSLMRDFASCELPLTAPPLPMYAIWHLRDRHDPVHCWLR
CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEHHHCCCCHHHHHHH
AELEAVVGEVGSGGAMRSAV
HHHHHHHHCCCCCCCHHCCC
>Mature Secondary Structure 
SKFDRSAAAAPSPTPDHTHLDGHLLALLIAVTEEGSITRAAERLGVTQSAVSHLLGKLR
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
AIVGDPLFVKSGRGIVATARAEALAVQARVLLEDMRRFATAPAFDPAALRTTFTIAANDF
HHHCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEECCHH
QRDLLLPRLLARLRAAAPGVALRVIPSDIPTPEMLRDAHCHLAISPRPPDASDILHKRLF
HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHCCCCEEEECCCCCCHHHHHHHHHH
EDSYQVFYDAAVREAPASLADYLAAEHVTVVYEPRRALDFDQGLATRGIERRFVATVPGF
HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHCCHHCCHHHHCCHHHHEEECCCC
AGIPSFLRGSALLATVPGLLRSSLMRDFASCELPLTAPPLPMYAIWHLRDRHDPVHCWLR
CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEHHHCCCCHHHHHHH
AELEAVVGEVGSGGAMRSAV
HHHHHHHHCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2703465; 2848005 [H]