Click here to switch to the map view.

The map label for this gene is fecI [H]

Identifier: 119898804

GI number: 119898804

Start: 2779714

End: 2780268

Strand: Reverse

Name: fecI [H]

Synonym: azo2513

Alternate gene names: 119898804

Gene position: 2780268-2779714 (Counterclockwise)

Preceding gene: 119898805

Following gene: 119898803

Centisome position: 63.53

GC content: 64.32

Gene sequence:

>555_bases
ATGCACACCGTCACTTCATCCGGTTCGATCGCCGACCTCTACCGCAATCATCACGGCTGGCTGCACGGTCTGTTGCGCCG
GCGGCTCGGCAACGCTTGCGATGCGGCCGATCTGGCTCACGATGCCTTTCTGCGCCTGATTGCCAAACCGCGTCAGTTCG
ACAGTGCGGAGGGCGCGAGGGCCTACCTCAGCACCGTGGCCAAGGGTTTGTGCGTCGATTTGTGGCGCCGCCGCGAAGTC
GAGCAGGCCTGGCTGGAGGCATTGTCCGCCCAACCGGAAGCGGTGGTGCCTTCGGCCGAGCACTGCGCTGTCATCCTCGA
GACCCTGTACGAGATTGACGCAATGCTCGCCCGCCTGCCGGTGAAGGCGGCCCACGCCTTCGTGATGGCGATGGCCTATG
GCATGACGGACAAGGAAGTGGCGGGCGAGCTTGGCGTTTCCGATCGCATGGTGCGCAAGTACATGAGCCAGGCCATGTTG
CACTGCATGGAGTTGCAGCTGCGTCACGAACTGGAACTGCAGCCACAGCGGACCCCGGCGCTGTCGGAGGGGTGA

Upstream 100 bases:

>100_bases
TAATAAAAATCATTCTCAACTGTACTACACAGCCAGCCAGACTGTTGCCGGTCCGCCAGCCAGATTGCCGGGTTTTCCGG
CCTTCCTTTCGGAGGCTCCC

Downstream 100 bases:

>100_bases
GGTGAAACCAGGGTCATGGTCTGTGTGCGTGCGGCGCCTGGGAGGGGCATTCCCGGGCTTGCGGCGGTTTGGTGGCGAAT
GACATGGATATCGACGACCC

Product: RNA polymerase ECF-subfamily sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MHTVTSSGSIADLYRNHHGWLHGLLRRRLGNACDAADLAHDAFLRLIAKPRQFDSAEGARAYLSTVAKGLCVDLWRRREV
EQAWLEALSAQPEAVVPSAEHCAVILETLYEIDAMLARLPVKAAHAFVMAMAYGMTDKEVAGELGVSDRMVRKYMSQAML
HCMELQLRHELELQPQRTPALSEG

Sequences:

>Translated_184_residues
MHTVTSSGSIADLYRNHHGWLHGLLRRRLGNACDAADLAHDAFLRLIAKPRQFDSAEGARAYLSTVAKGLCVDLWRRREV
EQAWLEALSAQPEAVVPSAEHCAVILETLYEIDAMLARLPVKAAHAFVMAMAYGMTDKEVAGELGVSDRMVRKYMSQAML
HCMELQLRHELELQPQRTPALSEG
>Mature_184_residues
MHTVTSSGSIADLYRNHHGWLHGLLRRRLGNACDAADLAHDAFLRLIAKPRQFDSAEGARAYLSTVAKGLCVDLWRRREV
EQAWLEALSAQPEAVVPSAEHCAVILETLYEIDAMLARLPVKAAHAFVMAMAYGMTDKEVAGELGVSDRMVRKYMSQAML
HCMELQLRHELELQPQRTPALSEG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=169, Percent_Identity=40.8284023668639, Blast_Score=126, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20522; Mature: 20522

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTVTSSGSIADLYRNHHGWLHGLLRRRLGNACDAADLAHDAFLRLIAKPRQFDSAEGAR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
AYLSTVAKGLCVDLWRRREVEQAWLEALSAQPEAVVPSAEHCAVILETLYEIDAMLARLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VKAAHAFVMAMAYGMTDKEVAGELGVSDRMVRKYMSQAMLHCMELQLRHELELQPQRTPA
HHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LSEG
CCCC
>Mature Secondary Structure
MHTVTSSGSIADLYRNHHGWLHGLLRRRLGNACDAADLAHDAFLRLIAKPRQFDSAEGAR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
AYLSTVAKGLCVDLWRRREVEQAWLEALSAQPEAVVPSAEHCAVILETLYEIDAMLARLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VKAAHAFVMAMAYGMTDKEVAGELGVSDRMVRKYMSQAMLHCMELQLRHELELQPQRTPA
HHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
LSEG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]