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The map label for this gene is ydcR [H]

Identifier: 119898759

GI number: 119898759

Start: 2725351

End: 2726754

Strand: Direct

Name: ydcR [H]

Synonym: azo2468

Alternate gene names: 119898759

Gene position: 2725351-2726754 (Clockwise)

Preceding gene: 119898758

Following gene: 119898767

Centisome position: 62.28

GC content: 71.94

Gene sequence:

>1404_bases
ATGAAGCTCTACGACCGCCTCTTCCTCGACATCGAACAGCGCATCCGCGACGGCGTGCTGCGCGCCGGGGAACGGCTGCC
CTCGGTGCGGCGCGCGTGCGAGGCGCAGCGGCTCAGCCCATCCACCGTGCTGCGCGCGTATTACCTGCTGGAGAGCCGCG
GCCTGATCGAGGCGCGGCCGCAGTCCGGCTACTACGTGCGCAGCCGCCCGGTGGGCACGCTGGCCGAGCCGGACATGAGC
CGGCCGCAGGCCGCCAGCCGCGCGCTGGCAGTGAGCGACTTCATCTTCGAGATCCTCGACGCGGTGAAGGACCCCGCAGT
GGTGCCGCTCGGTTCCAGCTTCGCCAGCCCGGCGCTGTTTCCGCTCGACAAGCTGGCGCGCTGCCTGGCGGCCGCGGCGC
GCCACATGGACCCGCGCGCCACGGTCACCGACCTGCCGCCCGGCAACGACGAGCTGCGCCGCCAGATCGCGCTGCGCTAC
CTCGCCGCCGGCGCCACCGTCTCGCCCGGCGAGATCGTCGTGACCTCGGGTGCGATGGAAGCGCTCAACCTGTCGCTTGA
GGCCACCACCCAGCCGGGCGACCTGGTGGCCATCGAGTCGCCCACCTTTCACGCCATCCTGCAGATGATCGAGCGCCGCG
GCCTCAAGGTGATCGAGCTGCCCACCCACCCGCGCGACGGCGTCGACCTGCCGGCGCTGGAGGCCGCGCTCGCCACCCAG
CCGGTGAAGGCCTGCATGCTGATGCTGAACTTCCAGCATCCCACCGGCGCCTGCGTGCCCGACGCGTCGCGTCCGGCGCT
GCTCGACCTGCTGCGCCGCCATCAGGTGCCGCTGATCGAGGACGACACCTATGCCGAGCTGCATTTCGACCGCCAGCCGC
CGCTGCCGACCAAGGCGCTGGACGACGACGGGCTGGTGCTGCACGTATCGGGTTTTTCCAAGAGCCTCGCGCCAGGCTAC
CGGCTGGGCTGGGTCGCGGCCGGGCGCTACGCGCAGAAGGTGCAGCGGCTGAAGCTGTCGGCCAGTCTCGCGACCACCAT
TCCGGTACAGATCGCGATCGCCGACTTCCTGCGCCAAGGCGCGTTCGACGCCCACCTGCGCCGCCTGCGCAGCGCGCTGG
AAATCCAGGAGGCGGCGCTCGCCGCGGCGGTGGAGCGCCATTTCCCCGCCGGCACGCGGCTGACCCGCCCGCGCGGCGGC
TACTTCTCGTGGGTGGAGCTGCCCGCCGGCACCGACGCGCTGGCGCTGCACCGGCGCGCACTGGACGAAGGCATCAGCAT
CGCGCCGGGGCCGATCTTTTCCGCCGGGCGCGAGTACGCCAACTTCATCCGCCTCAACTTCGGCCACCCGTGGAGCGGCG
AGATCGAGCGCGCGATGCGCCGGCTGGGAGAACTGGCGCGCTGA

Upstream 100 bases:

>100_bases
GTCGATCCCGATCCGCCCCACCGCCGCCGCGCACGCCCCTGCAATCCGCTGCCGGCTGCGCTACCCTCGCCGCTCCCGCC
GCCGTTCCACGCCCCGCCCC

Downstream 100 bases:

>100_bases
AGCGGCGGATTCACGCGGCCGGAGCGGCGCTCTCCCCCTCCGGCTCCATGTACACCAGTTCCCACAGGTGCCCGTCCAGG
TCTTCAAAGCCGTGCTCGTA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MKLYDRLFLDIEQRIRDGVLRAGERLPSVRRACEAQRLSPSTVLRAYYLLESRGLIEARPQSGYYVRSRPVGTLAEPDMS
RPQAASRALAVSDFIFEILDAVKDPAVVPLGSSFASPALFPLDKLARCLAAAARHMDPRATVTDLPPGNDELRRQIALRY
LAAGATVSPGEIVVTSGAMEALNLSLEATTQPGDLVAIESPTFHAILQMIERRGLKVIELPTHPRDGVDLPALEAALATQ
PVKACMLMLNFQHPTGACVPDASRPALLDLLRRHQVPLIEDDTYAELHFDRQPPLPTKALDDDGLVLHVSGFSKSLAPGY
RLGWVAAGRYAQKVQRLKLSASLATTIPVQIAIADFLRQGAFDAHLRRLRSALEIQEAALAAAVERHFPAGTRLTRPRGG
YFSWVELPAGTDALALHRRALDEGISIAPGPIFSAGREYANFIRLNFGHPWSGEIERAMRRLGELAR

Sequences:

>Translated_467_residues
MKLYDRLFLDIEQRIRDGVLRAGERLPSVRRACEAQRLSPSTVLRAYYLLESRGLIEARPQSGYYVRSRPVGTLAEPDMS
RPQAASRALAVSDFIFEILDAVKDPAVVPLGSSFASPALFPLDKLARCLAAAARHMDPRATVTDLPPGNDELRRQIALRY
LAAGATVSPGEIVVTSGAMEALNLSLEATTQPGDLVAIESPTFHAILQMIERRGLKVIELPTHPRDGVDLPALEAALATQ
PVKACMLMLNFQHPTGACVPDASRPALLDLLRRHQVPLIEDDTYAELHFDRQPPLPTKALDDDGLVLHVSGFSKSLAPGY
RLGWVAAGRYAQKVQRLKLSASLATTIPVQIAIADFLRQGAFDAHLRRLRSALEIQEAALAAAVERHFPAGTRLTRPRGG
YFSWVELPAGTDALALHRRALDEGISIAPGPIFSAGREYANFIRLNFGHPWSGEIERAMRRLGELAR
>Mature_467_residues
MKLYDRLFLDIEQRIRDGVLRAGERLPSVRRACEAQRLSPSTVLRAYYLLESRGLIEARPQSGYYVRSRPVGTLAEPDMS
RPQAASRALAVSDFIFEILDAVKDPAVVPLGSSFASPALFPLDKLARCLAAAARHMDPRATVTDLPPGNDELRRQIALRY
LAAGATVSPGEIVVTSGAMEALNLSLEATTQPGDLVAIESPTFHAILQMIERRGLKVIELPTHPRDGVDLPALEAALATQ
PVKACMLMLNFQHPTGACVPDASRPALLDLLRRHQVPLIEDDTYAELHFDRQPPLPTKALDDDGLVLHVSGFSKSLAPGY
RLGWVAAGRYAQKVQRLKLSASLATTIPVQIAIADFLRQGAFDAHLRRLRSALEIQEAALAAAVERHFPAGTRLTRPRGG
YFSWVELPAGTDALALHRRALDEGISIAPGPIFSAGREYANFIRLNFGHPWSGEIERAMRRLGELAR

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=316, Percent_Identity=24.0506329113924, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI33469970, Length=316, Percent_Identity=24.0506329113924, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI4507369, Length=312, Percent_Identity=25.9615384615385, Blast_Score=80, Evalue=4e-15,
Organism=Escherichia coli, GI1787710, Length=465, Percent_Identity=45.5913978494624, Blast_Score=409, Evalue=1e-115,
Organism=Escherichia coli, GI1790797, Length=471, Percent_Identity=37.5796178343949, Blast_Score=311, Evalue=5e-86,
Organism=Saccharomyces cerevisiae, GI6321000, Length=240, Percent_Identity=25, Blast_Score=77, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6321929, Length=214, Percent_Identity=27.1028037383178, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21356535, Length=339, Percent_Identity=23.0088495575221, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51135; Mature: 51135

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLYDRLFLDIEQRIRDGVLRAGERLPSVRRACEAQRLSPSTVLRAYYLLESRGLIEARP
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECC
QSGYYVRSRPVGTLAEPDMSRPQAASRALAVSDFIFEILDAVKDPAVVPLGSSFASPALF
CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC
PLDKLARCLAAAARHMDPRATVTDLPPGNDELRRQIALRYLAAGATVSPGEIVVTSGAME
CHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCHH
ALNLSLEATTQPGDLVAIESPTFHAILQMIERRGLKVIELPTHPRDGVDLPALEAALATQ
HHEEEEEECCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHH
PVKACMLMLNFQHPTGACVPDASRPALLDLLRRHQVPLIEDDTYAELHFDRQPPLPTKAL
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCC
DDDGLVLHVSGFSKSLAPGYRLGWVAAGRYAQKVQRLKLSASLATTIPVQIAIADFLRQG
CCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AFDAHLRRLRSALEIQEAALAAAVERHFPAGTRLTRPRGGYFSWVELPAGTDALALHRRA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
LDEGISIAPGPIFSAGREYANFIRLNFGHPWSGEIERAMRRLGELAR
HHCCCCCCCCCHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLYDRLFLDIEQRIRDGVLRAGERLPSVRRACEAQRLSPSTVLRAYYLLESRGLIEARP
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECC
QSGYYVRSRPVGTLAEPDMSRPQAASRALAVSDFIFEILDAVKDPAVVPLGSSFASPALF
CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC
PLDKLARCLAAAARHMDPRATVTDLPPGNDELRRQIALRYLAAGATVSPGEIVVTSGAME
CHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCHH
ALNLSLEATTQPGDLVAIESPTFHAILQMIERRGLKVIELPTHPRDGVDLPALEAALATQ
HHEEEEEECCCCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHH
PVKACMLMLNFQHPTGACVPDASRPALLDLLRRHQVPLIEDDTYAELHFDRQPPLPTKAL
HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCC
DDDGLVLHVSGFSKSLAPGYRLGWVAAGRYAQKVQRLKLSASLATTIPVQIAIADFLRQG
CCCCEEEEECCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AFDAHLRRLRSALEIQEAALAAAVERHFPAGTRLTRPRGGYFSWVELPAGTDALALHRRA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
LDEGISIAPGPIFSAGREYANFIRLNFGHPWSGEIERAMRRLGELAR
HHCCCCCCCCCHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]