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The map label for this gene is pobR1 [C]

Identifier: 119898738

GI number: 119898738

Start: 2699777

End: 2700655

Strand: Reverse

Name: pobR1 [C]

Synonym: azo2447

Alternate gene names: 119898738

Gene position: 2700655-2699777 (Counterclockwise)

Preceding gene: 119898740

Following gene: 119898736

Centisome position: 61.71

GC content: 68.71

Gene sequence:

>879_bases
GTGGAAGAAAAAAGCATCCCTACTTACAAGCTGTTCGGCGAACAGCAGCTGTGGCCGACGCCCGAGCCGATCCACTACGA
GACGATCGCGGACCGCAGCGCCCTGTACGATTGGGAAATCACCCCGCATAGCCACGACAACCTGCTGCAGATCCTCTTCC
TGCAGGAGGGCGGCGCCGGCATGACGCTGGAGACGCAGGCCGCGCCGCTGGCTACGCCCTGCGTGGTGATGATGCCGCCG
CGCCAGGCCCACGGCTTCCGCTTCTCCAGCGACGTGGTCGGCCACATCGTCACCATTCCCTACTTCCTGCTCGGCGAACT
GCTGGCGCTGGCGCCGGAGCTGAAGGGCCAGCTCGACACCGCGCTCTACATTCCGCTGGAGGACGACGAGGAGGCGCTGG
CGCTGATGCGCATGTGCTTCGGCCGGATCGCGCGCGAATACGCCGGCGGCGAGCCCGGCCGCCTGAGTGTGCTGATGGCT
ACCCTGGGGCTGGTGGTGGTGTGGCTCGCGCGCGCCGCGGGGGCCTCCACCGGCGCCGGCAGGCAGGACCGCGTGCGCCA
CCGCATCGAACGCTTCCTCGACCTGATCGAGCGCCACTTCCGCGAGTGGCAGCCGCTCGCCTTCTACGCCGGCCGGCTGG
GGGTATCGACCGCCCAGCTCAACAACAACTGCCGCAGCGAGACCGGCGCCAGCGCGCAGCAGATGCTGCACGACCGCCTG
CTGCTGGAGGCACGCCGGCTGCTGGCGTATTCCGACCTCGACGTCACCGCGATCAGCTATTCGCTCGGCTTCCGCGATCC
CGCGTATTTCTCGCGCTTCTTCGCGCGCCGGCAGGGCATGTCGCCGTCCGCGTTCCGCGACGCCAACCGGCAGCGTTAG

Upstream 100 bases:

>100_bases
GGGAGGGCGGGCGCTTGAACTCGCCGGGGTCATCACTTGTACTTTTCGCAAATTCGATTAGGCTCGATCCCAGATCACTC
AAGCAGCCGCAGGACCGCCG

Downstream 100 bases:

>100_bases
TCCACGACCGCCGAATCCCCGCTCTGCGCGGACTGCTTCTTCAGCCGGTAGTTGAGCTGCGGCCGGGTCATGCCGAGCAT
GCGCGCGGCGGCGGCGAGGT

Product: PobR regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator; Regulator Of 4HPA-Hydroxylase Operon; Transcriptional Regulatory Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Transcriptional Regulator AraC Family Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MEEKSIPTYKLFGEQQLWPTPEPIHYETIADRSALYDWEITPHSHDNLLQILFLQEGGAGMTLETQAAPLATPCVVMMPP
RQAHGFRFSSDVVGHIVTIPYFLLGELLALAPELKGQLDTALYIPLEDDEEALALMRMCFGRIAREYAGGEPGRLSVLMA
TLGLVVVWLARAAGASTGAGRQDRVRHRIERFLDLIERHFREWQPLAFYAGRLGVSTAQLNNNCRSETGASAQQMLHDRL
LLEARRLLAYSDLDVTAISYSLGFRDPAYFSRFFARRQGMSPSAFRDANRQR

Sequences:

>Translated_292_residues
MEEKSIPTYKLFGEQQLWPTPEPIHYETIADRSALYDWEITPHSHDNLLQILFLQEGGAGMTLETQAAPLATPCVVMMPP
RQAHGFRFSSDVVGHIVTIPYFLLGELLALAPELKGQLDTALYIPLEDDEEALALMRMCFGRIAREYAGGEPGRLSVLMA
TLGLVVVWLARAAGASTGAGRQDRVRHRIERFLDLIERHFREWQPLAFYAGRLGVSTAQLNNNCRSETGASAQQMLHDRL
LLEARRLLAYSDLDVTAISYSLGFRDPAYFSRFFARRQGMSPSAFRDANRQR
>Mature_292_residues
MEEKSIPTYKLFGEQQLWPTPEPIHYETIADRSALYDWEITPHSHDNLLQILFLQEGGAGMTLETQAAPLATPCVVMMPP
RQAHGFRFSSDVVGHIVTIPYFLLGELLALAPELKGQLDTALYIPLEDDEEALALMRMCFGRIAREYAGGEPGRLSVLMA
TLGLVVVWLARAAGASTGAGRQDRVRHRIERFLDLIERHFREWQPLAFYAGRLGVSTAQLNNNCRSETGASAQQMLHDRL
LLEARRLLAYSDLDVTAISYSLGFRDPAYFSRFFARRQGMSPSAFRDANRQR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32885; Mature: 32885

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKSIPTYKLFGEQQLWPTPEPIHYETIADRSALYDWEITPHSHDNLLQILFLQEGGAG
CCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCHHEEEEECCCCCCCCEEEEEEEECCCCC
MTLETQAAPLATPCVVMMPPRQAHGFRFSSDVVGHIVTIPYFLLGELLALAPELKGQLDT
CEEECCCCCCCCCEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ALYIPLEDDEEALALMRMCFGRIAREYAGGEPGRLSVLMATLGLVVVWLARAAGASTGAG
EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
RQDRVRHRIERFLDLIERHFREWQPLAFYAGRLGVSTAQLNNNCRSETGASAQQMLHDRL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHH
LLEARRLLAYSDLDVTAISYSLGFRDPAYFSRFFARRQGMSPSAFRDANRQR
HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHCCCCC
>Mature Secondary Structure
MEEKSIPTYKLFGEQQLWPTPEPIHYETIADRSALYDWEITPHSHDNLLQILFLQEGGAG
CCCCCCCCEEECCCCCCCCCCCCCCHHHHHCCHHEEEEECCCCCCCCEEEEEEEECCCCC
MTLETQAAPLATPCVVMMPPRQAHGFRFSSDVVGHIVTIPYFLLGELLALAPELKGQLDT
CEEECCCCCCCCCEEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ALYIPLEDDEEALALMRMCFGRIAREYAGGEPGRLSVLMATLGLVVVWLARAAGASTGAG
EEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
RQDRVRHRIERFLDLIERHFREWQPLAFYAGRLGVSTAQLNNNCRSETGASAQQMLHDRL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHH
LLEARRLLAYSDLDVTAISYSLGFRDPAYFSRFFARRQGMSPSAFRDANRQR
HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA