Click here to switch to the map view.

The map label for this gene is bkdR [H]

Identifier: 119898698

GI number: 119898698

Start: 2654233

End: 2654715

Strand: Direct

Name: bkdR [H]

Synonym: azo2407

Alternate gene names: 119898698

Gene position: 2654233-2654715 (Clockwise)

Preceding gene: 119898695

Following gene: 119898699

Centisome position: 60.65

GC content: 66.46

Gene sequence:

>483_bases
ATGGAAATCGACAAGTACGACCTTCACCTGCTCGACGCGCTGCAGCGCAACGGTCACGCCTCAAACGCAGAACTGGCGGA
ACAGATCCATCTGTCGCCCTCGCAGGTAAGCCGGCGGGTGCAGCGGCTGGAGCAGGCCGGCTACATCGAGCGCTACAGCG
CGCTGCTGCGCCCGGCGGCCGTCGGGCTGGGCGTAACCGCCTTTACTGCCGTATCACTGGAACGCCACGCCGAAGCCCAC
ACCGACGCCTTCAACGCCGCGGTGGCGGCGATGGACGAAGTGCTCGAGTGCTTTGCGATCACCGGCGAAGCGGACTATCT
GCTGCGCATCGTCGCGCCCGACCTCGCCTCGCTGTCGGCCTTCATGCTGCACCGCCTGATGCGCCTCACCGGCGTGCGCA
GCGTCAAGTCCAACATCGTGCTGGCCGAGATCAAGCGCACCACGCGCTTGCCGTTGGACCATTTGCTGGCGCGCGGCGGC
TGA

Upstream 100 bases:

>100_bases
TGAGACAAGCGCGCGAAGTGCGTGCAATATCGGCGATTGAACGCGTTCAATGCGCACATCCTGTGCATCACATATAACTT
TTGCGCATCAAACTTGCACA

Downstream 100 bases:

>100_bases
GCCGAATTACCCAGCTTGGGAAGAAAAAACCCGCGGCGGCCGGCGCGGCACGTCTCCGCACGACAACGGAATCGCTAAGA
TGAAAACAGGAACTGCTAAT

Product: bkd operon transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MEIDKYDLHLLDALQRNGHASNAELAEQIHLSPSQVSRRVQRLEQAGYIERYSALLRPAAVGLGVTAFTAVSLERHAEAH
TDAFNAAVAAMDEVLECFAITGEADYLLRIVAPDLASLSAFMLHRLMRLTGVRSVKSNIVLAEIKRTTRLPLDHLLARGG

Sequences:

>Translated_160_residues
MEIDKYDLHLLDALQRNGHASNAELAEQIHLSPSQVSRRVQRLEQAGYIERYSALLRPAAVGLGVTAFTAVSLERHAEAH
TDAFNAAVAAMDEVLECFAITGEADYLLRIVAPDLASLSAFMLHRLMRLTGVRSVKSNIVLAEIKRTTRLPLDHLLARGG
>Mature_160_residues
MEIDKYDLHLLDALQRNGHASNAELAEQIHLSPSQVSRRVQRLEQAGYIERYSALLRPAAVGLGVTAFTAVSLERHAEAH
TDAFNAAVAAMDEVLECFAITGEADYLLRIVAPDLASLSAFMLHRLMRLTGVRSVKSNIVLAEIKRTTRLPLDHLLARGG

Specific function: Positive regulator of the bkd operon for branched-chain keto acid dehydrogenase complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=149, Percent_Identity=35.5704697986577, Blast_Score=118, Evalue=2e-28,
Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=33.7748344370861, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1790182, Length=148, Percent_Identity=28.3783783783784, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg [H]

EC number: NA

Molecular weight: Translated: 17584; Mature: 17584

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIDKYDLHLLDALQRNGHASNAELAEQIHLSPSQVSRRVQRLEQAGYIERYSALLRPAA
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VGLGVTAFTAVSLERHAEAHTDAFNAAVAAMDEVLECFAITGEADYLLRIVAPDLASLSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHH
FMLHRLMRLTGVRSVKSNIVLAEIKRTTRLPLDHLLARGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
>Mature Secondary Structure
MEIDKYDLHLLDALQRNGHASNAELAEQIHLSPSQVSRRVQRLEQAGYIERYSALLRPAA
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VGLGVTAFTAVSLERHAEAHTDAFNAAVAAMDEVLECFAITGEADYLLRIVAPDLASLSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHH
FMLHRLMRLTGVRSVKSNIVLAEIKRTTRLPLDHLLARGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8320210 [H]