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The map label for this gene is yafC [H]

Identifier: 119898658

GI number: 119898658

Start: 2608274

End: 2609170

Strand: Reverse

Name: yafC [H]

Synonym: azo2367

Alternate gene names: 119898658

Gene position: 2609170-2608274 (Counterclockwise)

Preceding gene: 119898662

Following gene: 119898655

Centisome position: 59.62

GC content: 70.9

Gene sequence:

>897_bases
ATGACGAAGGCCGATCCGAGTTGGGAGCTGTATCGCTCTTTCCTGGCGGTGATGCGCAGTGGCAGCCTGTCCGCCGCGGC
GCGCGAGCTGTCGACCACCCAGCCGACCATCGGCCGTCACGTTGAGGCGCTGGAACAGGCGCTCGGCACCACGCTGTTCG
TGCGCACGCCCAGCGGCCTGACGCCGAACGCGATCGCCAGCGGGCTGGTGCCGCACGCGGAGAACATGGAGATGGCCGCG
GCCGCACTGGTCCGCCTGGCCAGCGGCGGTGCGGACGATGTCGGCGGCGCGGTGCGTCTGGCCGCCAGCCATATCGTCGG
CACCGAGTTGCTGCCCGACATCCTCACCGGCTTCCATCAGGCGCATCCGCGCATCGCCATCGAACTGGTGCTGAGCAGTG
CCGCCAGCGACCTGCTGCGGGGCGAGGCCGACATCGCGGTGCGGATGTTCCGCCCGGTGCAGGATGCGCTGGTGGCGCGG
CGGGTCGGCACCGGCCGCATCGGGCTTTTCGCCCACCGCCGCTACATCGAGCGCCACGGCCTGCCCGCCTCGCTGGCCGA
ACTGGAGCGCCACACGGTCATCGGCTTCGACCGCGACATGGCGTGGACGCGCGCCACCGCGGCTCTGAACGTCGAGATCA
CCCGCGAGATGTTCTCGCTGCGCTGCGATTCGGAGGTCGCCCAGCTCGCGGCGCTGCGTGCCGGCTTCGGTATCGGCGCC
TGTCACGTCCATGTCGCGCGGCGGGATGCGGCGCTGGTGCCGGTGCTGACCGAGCACCTTCGTTTCGACATGGAGGTGTG
GGTGACGATGCACCGCGACCTGCGCGGCGTGCGGCGGGTGGCGCTGATGTTCGAATACCTGGCCGCGGCGCTGGAGCGGC
TCTACGCGCCGGGTTGA

Upstream 100 bases:

>100_bases
GCATCCTGATTTCTCGAGTGATTAAGGGATGCCGGCGAGCATATTGAGCGCCGGCTTACAATCCCAGACTCATCCCCACA
TGGCAGATATACGAAAACGT

Downstream 100 bases:

>100_bases
TAGCGCGGCCCCAAAAAAAAATGCCCCGCGGATGCGGGGCATTTCCTCCTTGGGCGACCGCTTTCGACGCGGCCTTAGAA
CTCCGGCCCGCCGAACCCGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MTKADPSWELYRSFLAVMRSGSLSAAARELSTTQPTIGRHVEALEQALGTTLFVRTPSGLTPNAIASGLVPHAENMEMAA
AALVRLASGGADDVGGAVRLAASHIVGTELLPDILTGFHQAHPRIAIELVLSSAASDLLRGEADIAVRMFRPVQDALVAR
RVGTGRIGLFAHRRYIERHGLPASLAELERHTVIGFDRDMAWTRATAALNVEITREMFSLRCDSEVAQLAALRAGFGIGA
CHVHVARRDAALVPVLTEHLRFDMEVWVTMHRDLRGVRRVALMFEYLAAALERLYAPG

Sequences:

>Translated_298_residues
MTKADPSWELYRSFLAVMRSGSLSAAARELSTTQPTIGRHVEALEQALGTTLFVRTPSGLTPNAIASGLVPHAENMEMAA
AALVRLASGGADDVGGAVRLAASHIVGTELLPDILTGFHQAHPRIAIELVLSSAASDLLRGEADIAVRMFRPVQDALVAR
RVGTGRIGLFAHRRYIERHGLPASLAELERHTVIGFDRDMAWTRATAALNVEITREMFSLRCDSEVAQLAALRAGFGIGA
CHVHVARRDAALVPVLTEHLRFDMEVWVTMHRDLRGVRRVALMFEYLAAALERLYAPG
>Mature_297_residues
TKADPSWELYRSFLAVMRSGSLSAAARELSTTQPTIGRHVEALEQALGTTLFVRTPSGLTPNAIASGLVPHAENMEMAAA
ALVRLASGGADDVGGAVRLAASHIVGTELLPDILTGFHQAHPRIAIELVLSSAASDLLRGEADIAVRMFRPVQDALVARR
VGTGRIGLFAHRRYIERHGLPASLAELERHTVIGFDRDMAWTRATAALNVEITREMFSLRCDSEVAQLAALRAGFGIGAC
HVHVARRDAALVPVLTEHLRFDMEVWVTMHRDLRGVRRVALMFEYLAAALERLYAPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=185, Percent_Identity=27.5675675675676, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=204, Percent_Identity=25, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1789440, Length=199, Percent_Identity=25.1256281407035, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI145693193, Length=288, Percent_Identity=25.3472222222222, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32355; Mature: 32224

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKADPSWELYRSFLAVMRSGSLSAAARELSTTQPTIGRHVEALEQALGTTLFVRTPSGL
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCCC
TPNAIASGLVPHAENMEMAAAALVRLASGGADDVGGAVRLAASHIVGTELLPDILTGFHQ
CHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AHPRIAIELVLSSAASDLLRGEADIAVRMFRPVQDALVARRVGTGRIGLFAHRRYIERHG
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
LPASLAELERHTVIGFDRDMAWTRATAALNVEITREMFSLRCDSEVAQLAALRAGFGIGA
CCHHHHHHHHHHEECCCCCCHHHHHHHEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCCCH
CHVHVARRDAALVPVLTEHLRFDMEVWVTMHRDLRGVRRVALMFEYLAAALERLYAPG
HEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TKADPSWELYRSFLAVMRSGSLSAAARELSTTQPTIGRHVEALEQALGTTLFVRTPSGL
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEECCCCC
TPNAIASGLVPHAENMEMAAAALVRLASGGADDVGGAVRLAASHIVGTELLPDILTGFHQ
CHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
AHPRIAIELVLSSAASDLLRGEADIAVRMFRPVQDALVARRVGTGRIGLFAHRRYIERHG
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
LPASLAELERHTVIGFDRDMAWTRATAALNVEITREMFSLRCDSEVAQLAALRAGFGIGA
CCHHHHHHHHHHEECCCCCCHHHHHHHEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCCCH
CHVHVARRDAALVPVLTEHLRFDMEVWVTMHRDLRGVRRVALMFEYLAAALERLYAPG
HEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]