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The map label for this gene is yoeC [H]

Identifier: 119898597

GI number: 119898597

Start: 2526840

End: 2527454

Strand: Direct

Name: yoeC [H]

Synonym: azo2306

Alternate gene names: 119898597

Gene position: 2526840-2527454 (Clockwise)

Preceding gene: 119898593

Following gene: 119898598

Centisome position: 57.74

GC content: 62.11

Gene sequence:

>615_bases
ATGGAAGCCTGCGAATATCGAGAAGTGTGGAACAAGGGCAAGCTGGTGGGCCAGAAGGCGCCCCTCAAGCCCAAGGACAT
CTGGGCGATCCGTATCCACCTGCAGGGTGCCGGGAACGTGCGGGACTTGGCAATGTTCAACCTTGCCATCGACAGCAAGC
TACGAGGATGCGACCTCGTCAGCCTGCGCGTACGCGACGTCACGCAAGGCGGCCAGGTGCTGTCGCGTGCCATGGTGGTT
CAGAGCAAGACCCAACGGCCCGTGCAGTTTGAACTCACCGAGCCGACACGCACTGCCGTGGAACAGTGGATTGAGAAGGC
CGGGTTGGCGCCCGAGGAGTTCCTCTTCCCGAGTCGGCTTCGCGACTCGCCGCATGTCTCTACGCGACAGTACGCGAGAA
TCGTGAAGCACTGGGTGACGTCGGCCGGCCTCGACCCCGCCGCTTACGGCACGCCCTCCATGCGGCGAACGAAGGCGACC
TTGATCTACAAGCGGACGAAGAACTTGAGGGCTGTGCAGCTGCTGCTTGGCCACTCCAAGCTGGAGAGTACCGTCCGCTA
CCTCGGCATCGAGGTCGACGATGCCCTGGAGATCTCTGAGCAGATCGAGATCTGA

Upstream 100 bases:

>100_bases
CTACTCATGGCCGGAAGTGCGAGTCCGCCAGCGTTCCCAAGAGCGGCCGCCTGCTCACCAGCCAACAAGCAGACTCCGAT
CAACAGCCAAGGAGTCTGTG

Downstream 100 bases:

>100_bases
CAGCGGGGTGCGGCCGCCCGCCGCATGCGTTCTGTGCAGCGGGTGGCCGCTTACGGGAGAGACGCTGGAAGGGGGCTGTC
GGCCAGAAGCGGTCGGTCAT

Product: putative tyrosine recombinase xerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MEACEYREVWNKGKLVGQKAPLKPKDIWAIRIHLQGAGNVRDLAMFNLAIDSKLRGCDLVSLRVRDVTQGGQVLSRAMVV
QSKTQRPVQFELTEPTRTAVEQWIEKAGLAPEEFLFPSRLRDSPHVSTRQYARIVKHWVTSAGLDPAAYGTPSMRRTKAT
LIYKRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQIEI

Sequences:

>Translated_204_residues
MEACEYREVWNKGKLVGQKAPLKPKDIWAIRIHLQGAGNVRDLAMFNLAIDSKLRGCDLVSLRVRDVTQGGQVLSRAMVV
QSKTQRPVQFELTEPTRTAVEQWIEKAGLAPEEFLFPSRLRDSPHVSTRQYARIVKHWVTSAGLDPAAYGTPSMRRTKAT
LIYKRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQIEI
>Mature_204_residues
MEACEYREVWNKGKLVGQKAPLKPKDIWAIRIHLQGAGNVRDLAMFNLAIDSKLRGCDLVSLRVRDVTQGGQVLSRAMVV
QSKTQRPVQFELTEPTRTAVEQWIEKAGLAPEEFLFPSRLRDSPHVSTRQYARIVKHWVTSAGLDPAAYGTPSMRRTKAT
LIYKRTKNLRAVQLLLGHSKLESTVRYLGIEVDDALEISEQIEI

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 23079; Mature: 23079

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEACEYREVWNKGKLVGQKAPLKPKDIWAIRIHLQGAGNVRDLAMFNLAIDSKLRGCDLV
CCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEE
SLRVRDVTQGGQVLSRAMVVQSKTQRPVQFELTEPTRTAVEQWIEKAGLAPEEFLFPSRL
EEEEHHHHCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHCCHHHC
RDSPHVSTRQYARIVKHWVTSAGLDPAAYGTPSMRRTKATLIYKRTKNLRAVQLLLGHSK
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHEEECCCCHHHHHHHHHHHH
LESTVRYLGIEVDDALEISEQIEI
HHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MEACEYREVWNKGKLVGQKAPLKPKDIWAIRIHLQGAGNVRDLAMFNLAIDSKLRGCDLV
CCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCCEE
SLRVRDVTQGGQVLSRAMVVQSKTQRPVQFELTEPTRTAVEQWIEKAGLAPEEFLFPSRL
EEEEHHHHCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHCCHHHC
RDSPHVSTRQYARIVKHWVTSAGLDPAAYGTPSMRRTKATLIYKRTKNLRAVQLLLGHSK
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHEEECCCCHHHHHHHHHHHH
LESTVRYLGIEVDDALEISEQIEI
HHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]