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The map label for this gene is gumD [H]

Identifier: 119898537

GI number: 119898537

Start: 2461174

End: 2462565

Strand: Direct

Name: gumD [H]

Synonym: azo2246

Alternate gene names: 119898537

Gene position: 2461174-2462565 (Clockwise)

Preceding gene: 119898521

Following gene: 119898538

Centisome position: 56.24

GC content: 66.24

Gene sequence:

>1392_bases
ATGTCTGCTGCAATCCACAACCCTCCCTCCGTCCTTCGCGGCCACGTCAGCCTCACCGGCGTGCTCGAAGCCTTTCTCGA
CCCGACCATCGTGGTCGCGATGCTGTTCGCGGCCGCCTACGGGCACGACGAGCGCCTGGGGCCCGCCTATGTGGTGCTGG
CGATACTCGCGTTCTCGCTGACCTTTCCGGGCAAGGCCCATCTGCGTGATCCCTTGCGGCGGGTGCTGCGGCGTTTCGTG
GTGGGGTGGTTGCTGCTCGCGGCGGCGCTGTGGGCTTTCGGCTATCTCAGCGGTTACCTGTATTACTTTCCGCAGCCGAT
GCTGATCACCTGGATCGGCGGCACCCCGCTCGCCATCGCGCTTGCCCACCTGGCGCTGCGCGCCACCTTGCCGCGTGTGA
TCGGTGCCGCGGAAAACCGCCGCACCGCCGTCATCGCGGGGGCCAACGAGATCGGCATGCAGCTGGCGCGGCAGTTTGCC
GACAACCCCTATCTGGGCACCCGCGTCTCCGGTTTCTTCGACGACCGCGAACGGGCCCGGGCGGCCGCCGGCAACCATCC
GGTGCTGGGCAACATGACCGAACTGGCCAGCTACGTGAAACAGCACCGCATCGACACCATCTACCTCGCGCTGCCGATGG
CCACCCAGCCGCGCATCCTCGGGCTGCTCGACGACCTGAAGGACACCACCGCCTCGATCTACTTCGTGCCGGACATCTTC
GTCACCGACCTGATCCAGGGCCGCGTCGACACCGTCTGCGGCATGCCGGTGGTGGCGGTGTGCGAGACGCCCTTCACCGG
GCTGGACGGGGCGCTCAAGCGGGTCAGCGATGTCGTGCTGGCGGCGATCATTCTGGTGCTGCTGTCGCCGCTGCTGCTGG
CGGTGGCGGTAGGCGTGAAGCTGAGTTCCCCCGGCCCGGCCATCTTCCGCCAGCGTCGCTACGGTCTGGACGGGCGTGAG
ATCGTGGTCTACAAGTTCCGCTCGATGACCACCTGCGACGACGGCGCGGTGGTCAAGCAGGCCTCGCGCAACGACCAGCG
CATCACCCGCTTCGGCGCCTTCATCCGCCGCACCTCGCTGGATGAACTTCCGCAGTTCTTCAACGTGCTGCAAGGGCGCA
TGAGCATCGTCGGCCCGCGCCCGCACGCGGTGGCCCACAACGAGACCTACCGCAAGCTCATCAAGGGCTACATGATCCGC
CACAAGGTTAAGCCGGGCATCACCGGCTGGGCGCAGGTCAACGGCTACCGCGGCGAAACCGAAACGGTGGACAAGATGCA
GAAACGGATCGACTTCGACCTCGAATACCTGCGCAACTGGTCGCTGAAGCTGGATCTGTGGATCATCGTGAAGACGGCGC
TGCTGGTGGTGCGGGACCGCAACGCGTTCTAG

Upstream 100 bases:

>100_bases
CACATTTAAACGAAACACATTCTCGCCATAGCGTTACAGGCACCCCCTGCTATATTTGTAGTGATGCTGCGTTGCAGAAA
CAAGCCGGAAAAACAAGCCC

Downstream 100 bases:

>100_bases
ATACCGCGGCGGCCTGACGACGGCCGCCGCCTGCTTGTGCCCGCGGCGTCCTGCGGCCCCACGCTCCGCCGCGCCACCCC
ACCCTCCCGCTTGTACCCCT

Product: putative glycosyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MSAAIHNPPSVLRGHVSLTGVLEAFLDPTIVVAMLFAAAYGHDERLGPAYVVLAILAFSLTFPGKAHLRDPLRRVLRRFV
VGWLLLAAALWAFGYLSGYLYYFPQPMLITWIGGTPLAIALAHLALRATLPRVIGAAENRRTAVIAGANEIGMQLARQFA
DNPYLGTRVSGFFDDRERARAAAGNHPVLGNMTELASYVKQHRIDTIYLALPMATQPRILGLLDDLKDTTASIYFVPDIF
VTDLIQGRVDTVCGMPVVAVCETPFTGLDGALKRVSDVVLAAIILVLLSPLLLAVAVGVKLSSPGPAIFRQRRYGLDGRE
IVVYKFRSMTTCDDGAVVKQASRNDQRITRFGAFIRRTSLDELPQFFNVLQGRMSIVGPRPHAVAHNETYRKLIKGYMIR
HKVKPGITGWAQVNGYRGETETVDKMQKRIDFDLEYLRNWSLKLDLWIIVKTALLVVRDRNAF

Sequences:

>Translated_463_residues
MSAAIHNPPSVLRGHVSLTGVLEAFLDPTIVVAMLFAAAYGHDERLGPAYVVLAILAFSLTFPGKAHLRDPLRRVLRRFV
VGWLLLAAALWAFGYLSGYLYYFPQPMLITWIGGTPLAIALAHLALRATLPRVIGAAENRRTAVIAGANEIGMQLARQFA
DNPYLGTRVSGFFDDRERARAAAGNHPVLGNMTELASYVKQHRIDTIYLALPMATQPRILGLLDDLKDTTASIYFVPDIF
VTDLIQGRVDTVCGMPVVAVCETPFTGLDGALKRVSDVVLAAIILVLLSPLLLAVAVGVKLSSPGPAIFRQRRYGLDGRE
IVVYKFRSMTTCDDGAVVKQASRNDQRITRFGAFIRRTSLDELPQFFNVLQGRMSIVGPRPHAVAHNETYRKLIKGYMIR
HKVKPGITGWAQVNGYRGETETVDKMQKRIDFDLEYLRNWSLKLDLWIIVKTALLVVRDRNAF
>Mature_462_residues
SAAIHNPPSVLRGHVSLTGVLEAFLDPTIVVAMLFAAAYGHDERLGPAYVVLAILAFSLTFPGKAHLRDPLRRVLRRFVV
GWLLLAAALWAFGYLSGYLYYFPQPMLITWIGGTPLAIALAHLALRATLPRVIGAAENRRTAVIAGANEIGMQLARQFAD
NPYLGTRVSGFFDDRERARAAAGNHPVLGNMTELASYVKQHRIDTIYLALPMATQPRILGLLDDLKDTTASIYFVPDIFV
TDLIQGRVDTVCGMPVVAVCETPFTGLDGALKRVSDVVLAAIILVLLSPLLLAVAVGVKLSSPGPAIFRQRRYGLDGREI
VVYKFRSMTTCDDGAVVKQASRNDQRITRFGAFIRRTSLDELPQFFNVLQGRMSIVGPRPHAVAHNETYRKLIKGYMIRH
KVKPGITGWAQVNGYRGETETVDKMQKRIDFDLEYLRNWSLKLDLWIIVKTALLVVRDRNAF

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: COG2148

COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial sugar transferase family [H]

Homologues:

Organism=Escherichia coli, GI1788360, Length=346, Percent_Identity=46.8208092485549, Blast_Score=346, Evalue=2e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003362
- InterPro:   IPR017475
- InterPro:   IPR017473 [H]

Pfam domain/function: PF02397 Bac_transf [H]

EC number: NA

Molecular weight: Translated: 51339; Mature: 51208

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAIHNPPSVLRGHVSLTGVLEAFLDPTIVVAMLFAAAYGHDERLGPAYVVLAILAFSL
CCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
TFPGKAHLRDPLRRVLRRFVVGWLLLAAALWAFGYLSGYLYYFPQPMLITWIGGTPLAIA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
LAHLALRATLPRVIGAAENRRTAVIAGANEIGMQLARQFADNPYLGTRVSGFFDDRERAR
HHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
AAAGNHPVLGNMTELASYVKQHRIDTIYLALPMATQPRILGLLDDLKDTTASIYFVPDIF
HHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEEECHHH
VTDLIQGRVDTVCGMPVVAVCETPFTGLDGALKRVSDVVLAAIILVLLSPLLLAVAVGVK
HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
LSSPGPAIFRQRRYGLDGREIVVYKFRSMTTCDDGAVVKQASRNDQRITRFGAFIRRTSL
ECCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCH
DELPQFFNVLQGRMSIVGPRPHAVAHNETYRKLIKGYMIRHKVKPGITGWAQVNGYRGET
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCH
ETVDKMQKRIDFDLEYLRNWSLKLDLWIIVKTALLVVRDRNAF
HHHHHHHHHHCCCHHHHCCCCCEEEHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SAAIHNPPSVLRGHVSLTGVLEAFLDPTIVVAMLFAAAYGHDERLGPAYVVLAILAFSL
CCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
TFPGKAHLRDPLRRVLRRFVVGWLLLAAALWAFGYLSGYLYYFPQPMLITWIGGTPLAIA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH
LAHLALRATLPRVIGAAENRRTAVIAGANEIGMQLARQFADNPYLGTRVSGFFDDRERAR
HHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
AAAGNHPVLGNMTELASYVKQHRIDTIYLALPMATQPRILGLLDDLKDTTASIYFVPDIF
HHCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEEECHHH
VTDLIQGRVDTVCGMPVVAVCETPFTGLDGALKRVSDVVLAAIILVLLSPLLLAVAVGVK
HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
LSSPGPAIFRQRRYGLDGREIVVYKFRSMTTCDDGAVVKQASRNDQRITRFGAFIRRTSL
ECCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCH
DELPQFFNVLQGRMSIVGPRPHAVAHNETYRKLIKGYMIRHKVKPGITGWAQVNGYRGET
HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCH
ETVDKMQKRIDFDLEYLRNWSLKLDLWIIVKTALLVVRDRNAF
HHHHHHHHHHCCCHHHHCCCCCEEEHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8759852; 9097040; 9278503 [H]