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The map label for this gene is yciR [C]

Identifier: 119898516

GI number: 119898516

Start: 2437796

End: 2439499

Strand: Direct

Name: yciR [C]

Synonym: azo2225

Alternate gene names: 119898516

Gene position: 2437796-2439499 (Clockwise)

Preceding gene: 119898515

Following gene: 119898520

Centisome position: 55.71

GC content: 66.43

Gene sequence:

>1704_bases
ATGATCCAGGTCTACCGCAAACCGCCGCAGGCCCTGCCTTCGGAAAGCGCATTCTTCCGCTTGCCCGGGGCCTTGCTGAT
GGTGCTGGACGAGGACTGGATCATCCAGATGATGAGCGAATCCTGGCGCGAGGTGCTCGGCACGCAGGCCGACCTCCGTT
GGCGCCGGTTCACCGAGCTGGTGCACGAACTGGACCGCGCTGACGTCGAGCAGCGCCTCGGCCACATCGGCGAAGCGCTC
AGCACGGTCCGTTTCTCATGCCGCTGCCGCAAGGCCGACGGGCGCTACGTGGGACTGACCTGGAACGTCAGCCACGATGT
GGACCAGCACCTGTTCTATGCCTCCGCGCACGAAACCGCGGTCAACCTCTCCGAGCTGGAAGCGCGGCTGCCCGAGGTCT
ACATCGACGGCCTCACCGGCCTGCCCAACCGCGGCCTGTTCCTCGACCGCGTCTGCCACACCATGCTGCGCGCGCAGCGC
CGCAAGGATTTGCGCTTCGCGGTCATCCACTGCGGCATCGACCGCTTCAGCGTCATCAACCACAGCCTGGGCAACCGCGT
CGGCGACCTGCTGCTGATCGAGGTGGCCAACCTGTTGCGCCGCTCCACCCGCCCCACCGACATGGTGGCGCGGCTGGGCG
GTGACGAATTCGGCATCCTGCTCGAAGACATCCGCGATGCGAGTTCGCCGGTGCGGGTGGTCAAGCGCATCCAGGAAAAC
TTCGTGCTGCCTTTCCAGCTGCACGAACACGAAGTGTTCGCCAGCATGTCCACCGGCATCACGCTCGGCGGCGAGCAGTA
CGAAGAGGCCGACCTGATGCTGCGCGACGCCGACATGGCGATGGCCAGTGCGAAGGCCCACGGGGGCGGCGGTTACGTGC
TGTTCGACCGCGGCATGCACGAGGAAGCGCTGCGCCGCCTCGACCTCGAACTCGACCTGCGGCGCGCGCTGGAGAAGCAC
CAGTTCGAGGCCTACTACCAGCCCATCGTGCGCCTGAAGGACAACCGCCTGATGGGCTTCGAGGCGCTGGTGCGCTGGAA
CCATCCGGATCGCGGCCTGATCTCGCCGGCCGAGTTCATCCCGCTGGCAGAAGACAACGGCCTGATCGTGCACATCGGGC
GCTGGATGCTGCAGGAAGCCTGCGCCCAGATGCGACGCTGGCAGCTCGAATATCCGCGGCGGCCGGCGCTGACCGTCAGC
GTCAATCTCTCCGCGCGCCAGCTGCTGCATCCGCAGCTGCTGCCGGAAATCCGCCGCACCCTGCGCGACACCGGGCTTTC
CGCGCGCCATCTCAAGCTCGAGATCACCGAGAGCGTGATGATGGAGGACGCCCAGCGCGCGATCGAGCTGCTCGAAGCCC
TCAAGCGCACCCGGCTGTCGCTGATGCTGGACGACTTCGGCACCGGCTATTCCTCGCTGTCCTACCTGCACCGGCTGCCG
ATCGACGCGCTGAAGGTGGACCGCTCCTTCGTGATGCACATGCACGAGCGCGCGGACGACCGCAGCTTCGTCGAGACTAT
CGTCAACCTGGCCCACAAGCTGGGCCGGGCGGTGGTGTGCGAAGGCGTCGAGCTGCCGGAACAGGAAGCCCTGCTGCGCG
AGCTGGGCGTCGAATATGGTCAGGGCTACCTCTATTCCAGACCGGTCACCGCCTCGCAGGCCGAGATGCTGATCATCGAC
GACCAGGAACGCGCGACGGACTGA

Upstream 100 bases:

>100_bases
AGGGGCCTCCGGCCACGCTAACATCGCGCCCGCAGCCGGCGTCCCTCCCTCCGCCAGACGCGTCTGCCGACGAGAACACG
ATGATCGAGACGCTTCATTC

Downstream 100 bases:

>100_bases
CCGCCGCCCTCAACGCGCTTCGCCGGCCGCCTCCCCGGCCGGGCGGCCGCTGCGCAGGCAGGCGACCACGGCGGTGGCGA
TACCGTCGGCCATGCGCGCC

Product: GGDEF/EAL/PAS-domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MIQVYRKPPQALPSESAFFRLPGALLMVLDEDWIIQMMSESWREVLGTQADLRWRRFTELVHELDRADVEQRLGHIGEAL
STVRFSCRCRKADGRYVGLTWNVSHDVDQHLFYASAHETAVNLSELEARLPEVYIDGLTGLPNRGLFLDRVCHTMLRAQR
RKDLRFAVIHCGIDRFSVINHSLGNRVGDLLLIEVANLLRRSTRPTDMVARLGGDEFGILLEDIRDASSPVRVVKRIQEN
FVLPFQLHEHEVFASMSTGITLGGEQYEEADLMLRDADMAMASAKAHGGGGYVLFDRGMHEEALRRLDLELDLRRALEKH
QFEAYYQPIVRLKDNRLMGFEALVRWNHPDRGLISPAEFIPLAEDNGLIVHIGRWMLQEACAQMRRWQLEYPRRPALTVS
VNLSARQLLHPQLLPEIRRTLRDTGLSARHLKLEITESVMMEDAQRAIELLEALKRTRLSLMLDDFGTGYSSLSYLHRLP
IDALKVDRSFVMHMHERADDRSFVETIVNLAHKLGRAVVCEGVELPEQEALLRELGVEYGQGYLYSRPVTASQAEMLIID
DQERATD

Sequences:

>Translated_567_residues
MIQVYRKPPQALPSESAFFRLPGALLMVLDEDWIIQMMSESWREVLGTQADLRWRRFTELVHELDRADVEQRLGHIGEAL
STVRFSCRCRKADGRYVGLTWNVSHDVDQHLFYASAHETAVNLSELEARLPEVYIDGLTGLPNRGLFLDRVCHTMLRAQR
RKDLRFAVIHCGIDRFSVINHSLGNRVGDLLLIEVANLLRRSTRPTDMVARLGGDEFGILLEDIRDASSPVRVVKRIQEN
FVLPFQLHEHEVFASMSTGITLGGEQYEEADLMLRDADMAMASAKAHGGGGYVLFDRGMHEEALRRLDLELDLRRALEKH
QFEAYYQPIVRLKDNRLMGFEALVRWNHPDRGLISPAEFIPLAEDNGLIVHIGRWMLQEACAQMRRWQLEYPRRPALTVS
VNLSARQLLHPQLLPEIRRTLRDTGLSARHLKLEITESVMMEDAQRAIELLEALKRTRLSLMLDDFGTGYSSLSYLHRLP
IDALKVDRSFVMHMHERADDRSFVETIVNLAHKLGRAVVCEGVELPEQEALLRELGVEYGQGYLYSRPVTASQAEMLIID
DQERATD
>Mature_567_residues
MIQVYRKPPQALPSESAFFRLPGALLMVLDEDWIIQMMSESWREVLGTQADLRWRRFTELVHELDRADVEQRLGHIGEAL
STVRFSCRCRKADGRYVGLTWNVSHDVDQHLFYASAHETAVNLSELEARLPEVYIDGLTGLPNRGLFLDRVCHTMLRAQR
RKDLRFAVIHCGIDRFSVINHSLGNRVGDLLLIEVANLLRRSTRPTDMVARLGGDEFGILLEDIRDASSPVRVVKRIQEN
FVLPFQLHEHEVFASMSTGITLGGEQYEEADLMLRDADMAMASAKAHGGGGYVLFDRGMHEEALRRLDLELDLRRALEKH
QFEAYYQPIVRLKDNRLMGFEALVRWNHPDRGLISPAEFIPLAEDNGLIVHIGRWMLQEACAQMRRWQLEYPRRPALTVS
VNLSARQLLHPQLLPEIRRTLRDTGLSARHLKLEITESVMMEDAQRAIELLEALKRTRLSLMLDDFGTGYSSLSYLHRLP
IDALKVDRSFVMHMHERADDRSFVETIVNLAHKLGRAVVCEGVELPEQEALLRELGVEYGQGYLYSRPVTASQAEMLIID
DQERATD

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=416, Percent_Identity=35.3365384615385, Blast_Score=261, Evalue=1e-70,
Organism=Escherichia coli, GI87081921, Length=491, Percent_Identity=31.9755600814664, Blast_Score=226, Evalue=3e-60,
Organism=Escherichia coli, GI226510982, Length=454, Percent_Identity=28.4140969162996, Blast_Score=169, Evalue=5e-43,
Organism=Escherichia coli, GI87081845, Length=259, Percent_Identity=35.9073359073359, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=35.7446808510638, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=36.1344537815126, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=34.468085106383, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1787055, Length=274, Percent_Identity=30.2919708029197, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=34.412955465587, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=34.1666666666667, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI1788849, Length=236, Percent_Identity=30.9322033898305, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87082096, Length=237, Percent_Identity=32.0675105485232, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1788381, Length=426, Percent_Identity=24.4131455399061, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=30.4093567251462, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=29.0909090909091, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI87081977, Length=162, Percent_Identity=30.8641975308642, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787410, Length=229, Percent_Identity=23.5807860262009, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=151, Percent_Identity=33.112582781457, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1786584, Length=183, Percent_Identity=29.5081967213115, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1789650, Length=420, Percent_Identity=19.7619047619048, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 64974; Mature: 64974

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQVYRKPPQALPSESAFFRLPGALLMVLDEDWIIQMMSESWREVLGTQADLRWRRFTEL
CCCCCCCCCCCCCCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VHELDRADVEQRLGHIGEALSTVRFSCRCRKADGRYVGLTWNVSHDVDQHLFYASAHETA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEECCCCHHHHHEEECHHHHH
VNLSELEARLPEVYIDGLTGLPNRGLFLDRVCHTMLRAQRRKDLRFAVIHCGIDRFSVIN
CCHHHHHHHCCHHEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHH
HSLGNRVGDLLLIEVANLLRRSTRPTDMVARLGGDEFGILLEDIRDASSPVRVVKRIQEN
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHC
FVLPFQLHEHEVFASMSTGITLGGEQYEEADLMLRDADMAMASAKAHGGGGYVLFDRGMH
CCCEEEECCHHHHHHHHCCEEECCCCHHHHHHEEEHHHHHHHHHCCCCCCCEEEEECCCC
EEALRRLDLELDLRRALEKHQFEAYYQPIVRLKDNRLMGFEALVRWNHPDRGLISPAEFI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHEECCCCCCCCCCHHHHC
PLAEDNGLIVHIGRWMLQEACAQMRRWQLEYPRRPALTVSVNLSARQLLHPQLLPEIRRT
EEECCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHCHHHHHHHHHH
LRDTGLSARHLKLEITESVMMEDAQRAIELLEALKRTRLSLMLDDFGTGYSSLSYLHRLP
HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
IDALKVDRSFVMHMHERADDRSFVETIVNLAHKLGRAVVCEGVELPEQEALLRELGVEYG
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCHHHC
QGYLYSRPVTASQAEMLIIDDQERATD
CCEEEECCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MIQVYRKPPQALPSESAFFRLPGALLMVLDEDWIIQMMSESWREVLGTQADLRWRRFTEL
CCCCCCCCCCCCCCCCCEEECCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
VHELDRADVEQRLGHIGEALSTVRFSCRCRKADGRYVGLTWNVSHDVDQHLFYASAHETA
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEEEEECCCCHHHHHEEECHHHHH
VNLSELEARLPEVYIDGLTGLPNRGLFLDRVCHTMLRAQRRKDLRFAVIHCGIDRFSVIN
CCHHHHHHHCCHHEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHH
HSLGNRVGDLLLIEVANLLRRSTRPTDMVARLGGDEFGILLEDIRDASSPVRVVKRIQEN
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHC
FVLPFQLHEHEVFASMSTGITLGGEQYEEADLMLRDADMAMASAKAHGGGGYVLFDRGMH
CCCEEEECCHHHHHHHHCCEEECCCCHHHHHHEEEHHHHHHHHHCCCCCCCEEEEECCCC
EEALRRLDLELDLRRALEKHQFEAYYQPIVRLKDNRLMGFEALVRWNHPDRGLISPAEFI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHEECCCCCCCCCCHHHHC
PLAEDNGLIVHIGRWMLQEACAQMRRWQLEYPRRPALTVSVNLSARQLLHPQLLPEIRRT
EEECCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHCHHHHHHHHHH
LRDTGLSARHLKLEITESVMMEDAQRAIELLEALKRTRLSLMLDDFGTGYSSLSYLHRLP
HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
IDALKVDRSFVMHMHERADDRSFVETIVNLAHKLGRAVVCEGVELPEQEALLRELGVEYG
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCHHHC
QGYLYSRPVTASQAEMLIIDDQERATD
CCEEEECCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]