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The map label for this gene is yncD [H]

Identifier: 119898508

GI number: 119898508

Start: 2430582

End: 2432618

Strand: Direct

Name: yncD [H]

Synonym: azo2217

Alternate gene names: 119898508

Gene position: 2430582-2432618 (Clockwise)

Preceding gene: 119898507

Following gene: 119898509

Centisome position: 55.54

GC content: 68.92

Gene sequence:

>2037_bases
ATGCTTCGCCCCGCACTTTCACTTGCCACCCGTCCGCATCCGCTCGCCCTTCTGCTCGCCGCGGCCGCGTCCCTGCCCGC
GCTCGCCCACGAGGACGGCGCAACCGAGCTGCAGGCGGTCGAGGTGAAGGGCGAGGCGCTGCACGGCACCGGCGCGGCCT
ACTCCGCCACCCGGCTCGAACACGACGATATCCGCGACCACCGGGTGGCGCGCCCGCAGGACCTGTTCCGCCTAGTGCCG
GGCATGAACCTCACCGGCTACGGGCTGCCCGGCGTGGCGGACCAGGTTGCGCTGCGCGGCTTCGGCAACGGCGGACACGG
CGGCGACATCGGCTTCGTCATCGACGGCATTCCGCTCAACGAGGCGATGTCGCACGCCGACGGTTACGCCGACCTCAACG
TGATCGTGCCGCTGGAACTCGAGCGCATGACCGTGCTGCGCGGTCCGGTTTCTGCGCTGTACGGCAACTACAACCGCGCC
GGCACCGTCACGCTGCAAACGCGCAAGGGTGGCGCCTACCGCGACCTCGACCTCAACCTCGGCAGCTACGGCACCGTCGA
CCTGCAGGCGGCGCTCGGTGCGGGGTTCGGCGGCAACCAGCAACTCAACCTGGCCGCCCAGCACTACCGCAGCGACGGTT
TTCGCGACCAGTCCGCGGGCGAGCGCAGCACGCTGGCGGGACGCTGGGCAGTCCAGGCCACGTCCGACCTTGAAGTTGCC
GTGTCGGCGCGCGCGCACGAGGCCAAGGCCGACAACCCCGGCTACCTCACCCGCGCCCAGTTCAAGGACGACCCCTACGG
CAAGGACCCGCGCACCCAGAACGACGGCGCTGAAAAAGGCTTCTACACGCTGCGCACCGACCTCAACTACCAGTTGGCGC
CCGAACTCAAGCTGCTGAGCTTCGCTTACGCGACCCGGCAGGACTTCACCCGCTGGTTCAGCCGCGGGGGCGCCGCCGCA
CCCAGCTGGCGCCAGCGCGAGGAAACCTACGAGCGCGACGTGCTCGGTGCGGGGTTCAACCTCAACGGCCACCACCACCT
GGGTGCCGCCGGGCAACTGAGCTGGGTCGGCGGCGTCGAGACCTTCTCCGAGACCACCGATTACCTCAAGTACGAGAACA
CCCGGTTCCGCCGCCGCATCGGCACCGCCGAGTTCGACCGCCGCTTCAAGCTCGACAACCTGGCCGTGTTCGGCGAAGCC
GCACTCGATGCGCACCGGTTGTTCAAACCGTCGATCGGCTTGCGTTGGGACCGTTTTACCGGCGACTGCGACCGGCGCGG
CGCCGAGACCAGCGCCCAGCCCTGCGCGCGGATGGACGCGGTGGAGCACTTGAGCCCCAAGCTGGGCGTGCGTTCTCAGG
TCGCCGATGGCGTGGAGCTGCGTGCGAGCTGGACCGAGGGCTTCGCGCTCGCCAACGACATGGCAAAGTATTCGCTGGGC
GCCCGCCACGTCGATCCCAACGTGTTCCGGCAGACGGAGTTGGGGGCCAACGTCAGGCTGTCTTCGCAACTCGTGCTGGA
CCTGGCCGCCTATCACCTGCGCTCGTCCGACGAGATCAACTACGACAGCGTCGCCAACGAATACATCAACGCGGGCAGCA
CGCGTCGCACCGGGGTGGAAGTCTCGGCGCTGTGGGCGCCGGCAGACCGTTTCGACCTGTCGCTGAACTGGGCCAGTGCG
CACAGCAAGGTGCTGGAGAACCCCAACAGCAGCCTGGAAGGCAAACGCGTCACCGCGGTGCCGCGCTACACCGCCACGGT
GGAAGCGAACTGGCGCCCGGCGCCCGGCTGGCGCGGCACCGTCACCTGGCGCCGGGTCGGCTCGTTCGCGGTAACGCAGG
ACAACACGCAAACCTACGGTGGCTACAGCGTGTTCGACCTCGGCGCCGCCTACACCTTCCCGGGCGCCGGCGCCTACACG
CTGTACGCCGCCATCGACAACGTCGCCAACCGCGAATACGCCACCGCTGTTTCCACGGTGGGCTACGCCACCGCCGCTCC
GCGCACGCTGCGCGTCGGCGCCCAACTGAGTTTCTGA

Upstream 100 bases:

>100_bases
GCGCGAGATCCATCCGGTCGGGCGCACGGAGGCGGCGTCGGTATGAACTTTGCTAGAATTTTTCATACAGCCATACCCCG
CTCGTGCCCGACCTCCATCC

Downstream 100 bases:

>100_bases
TCCATGCCTTCTCCGTCCTCGCCCGTCCGCCGTTCCGGTCTCGCCGCCCTCGCCGCGCTGCTGTGCGCCGCCCTTGCCGG
CCCCGCCGCCGCCCACACCG

Product: putative TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 678; Mature: 678

Protein sequence:

>678_residues
MLRPALSLATRPHPLALLLAAAASLPALAHEDGATELQAVEVKGEALHGTGAAYSATRLEHDDIRDHRVARPQDLFRLVP
GMNLTGYGLPGVADQVALRGFGNGGHGGDIGFVIDGIPLNEAMSHADGYADLNVIVPLELERMTVLRGPVSALYGNYNRA
GTVTLQTRKGGAYRDLDLNLGSYGTVDLQAALGAGFGGNQQLNLAAQHYRSDGFRDQSAGERSTLAGRWAVQATSDLEVA
VSARAHEAKADNPGYLTRAQFKDDPYGKDPRTQNDGAEKGFYTLRTDLNYQLAPELKLLSFAYATRQDFTRWFSRGGAAA
PSWRQREETYERDVLGAGFNLNGHHHLGAAGQLSWVGGVETFSETTDYLKYENTRFRRRIGTAEFDRRFKLDNLAVFGEA
ALDAHRLFKPSIGLRWDRFTGDCDRRGAETSAQPCARMDAVEHLSPKLGVRSQVADGVELRASWTEGFALANDMAKYSLG
ARHVDPNVFRQTELGANVRLSSQLVLDLAAYHLRSSDEINYDSVANEYINAGSTRRTGVEVSALWAPADRFDLSLNWASA
HSKVLENPNSSLEGKRVTAVPRYTATVEANWRPAPGWRGTVTWRRVGSFAVTQDNTQTYGGYSVFDLGAAYTFPGAGAYT
LYAAIDNVANREYATAVSTVGYATAAPRTLRVGAQLSF

Sequences:

>Translated_678_residues
MLRPALSLATRPHPLALLLAAAASLPALAHEDGATELQAVEVKGEALHGTGAAYSATRLEHDDIRDHRVARPQDLFRLVP
GMNLTGYGLPGVADQVALRGFGNGGHGGDIGFVIDGIPLNEAMSHADGYADLNVIVPLELERMTVLRGPVSALYGNYNRA
GTVTLQTRKGGAYRDLDLNLGSYGTVDLQAALGAGFGGNQQLNLAAQHYRSDGFRDQSAGERSTLAGRWAVQATSDLEVA
VSARAHEAKADNPGYLTRAQFKDDPYGKDPRTQNDGAEKGFYTLRTDLNYQLAPELKLLSFAYATRQDFTRWFSRGGAAA
PSWRQREETYERDVLGAGFNLNGHHHLGAAGQLSWVGGVETFSETTDYLKYENTRFRRRIGTAEFDRRFKLDNLAVFGEA
ALDAHRLFKPSIGLRWDRFTGDCDRRGAETSAQPCARMDAVEHLSPKLGVRSQVADGVELRASWTEGFALANDMAKYSLG
ARHVDPNVFRQTELGANVRLSSQLVLDLAAYHLRSSDEINYDSVANEYINAGSTRRTGVEVSALWAPADRFDLSLNWASA
HSKVLENPNSSLEGKRVTAVPRYTATVEANWRPAPGWRGTVTWRRVGSFAVTQDNTQTYGGYSVFDLGAAYTFPGAGAYT
LYAAIDNVANREYATAVSTVGYATAAPRTLRVGAQLSF
>Mature_678_residues
MLRPALSLATRPHPLALLLAAAASLPALAHEDGATELQAVEVKGEALHGTGAAYSATRLEHDDIRDHRVARPQDLFRLVP
GMNLTGYGLPGVADQVALRGFGNGGHGGDIGFVIDGIPLNEAMSHADGYADLNVIVPLELERMTVLRGPVSALYGNYNRA
GTVTLQTRKGGAYRDLDLNLGSYGTVDLQAALGAGFGGNQQLNLAAQHYRSDGFRDQSAGERSTLAGRWAVQATSDLEVA
VSARAHEAKADNPGYLTRAQFKDDPYGKDPRTQNDGAEKGFYTLRTDLNYQLAPELKLLSFAYATRQDFTRWFSRGGAAA
PSWRQREETYERDVLGAGFNLNGHHHLGAAGQLSWVGGVETFSETTDYLKYENTRFRRRIGTAEFDRRFKLDNLAVFGEA
ALDAHRLFKPSIGLRWDRFTGDCDRRGAETSAQPCARMDAVEHLSPKLGVRSQVADGVELRASWTEGFALANDMAKYSLG
ARHVDPNVFRQTELGANVRLSSQLVLDLAAYHLRSSDEINYDSVANEYINAGSTRRTGVEVSALWAPADRFDLSLNWASA
HSKVLENPNSSLEGKRVTAVPRYTATVEANWRPAPGWRGTVTWRRVGSFAVTQDNTQTYGGYSVFDLGAAYTFPGAGAYT
LYAAIDNVANREYATAVSTVGYATAAPRTLRVGAQLSF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=613, Percent_Identity=23.0016313213703, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 73763; Mature: 73763

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRPALSLATRPHPLALLLAAAASLPALAHEDGATELQAVEVKGEALHGTGAAYSATRLE
CCCCCHHHCCCCCHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCCEECCCCCCCEECCCC
HDDIRDHRVARPQDLFRLVPGMNLTGYGLPGVADQVALRGFGNGGHGGDIGFVIDGIPLN
CCCCHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHEECCCCCCCCCEEEEEECCCHH
EAMSHADGYADLNVIVPLELERMTVLRGPVSALYGNYNRAGTVTLQTRKGGAYRDLDLNL
HHHHHCCCCCCEEEEEEEEHHHHHHHHCCHHHHHCCCCCCEEEEEEECCCCCEEEEECCC
GSYGTVDLQAALGAGFGGNQQLNLAAQHYRSDGFRDQSAGERSTLAGRWAVQATSDLEVA
CCCCCEEEHHHHCCCCCCCCEEEHHHHHHCCCCCCCCCCCCCHHCCCEEEEEECCCCEEE
VSARAHEAKADNPGYLTRAQFKDDPYGKDPRTQNDGAEKGFYTLRTDLNYQLAPELKLLS
EECCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEECCCHHHHH
FAYATRQDFTRWFSRGGAAAPSWRQREETYERDVLGAGFNLNGHHHLGAAGQLSWVGGVE
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCHH
TFSETTDYLKYENTRFRRRIGTAEFDRRFKLDNLAVFGEAALDAHRLFKPSIGLRWDRFT
HHHHHHHHHHCCCCHHHHHCCCHHHHCEEECCCEEEECHHHHHHHHHCCCCCCCEECCCC
GDCDRRGAETSAQPCARMDAVEHLSPKLGVRSQVADGVELRASWTEGFALANDMAKYSLG
CCHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHCC
ARHVDPNVFRQTELGANVRLSSQLVLDLAAYHLRSSDEINYDSVANEYINAGSTRRTGVE
CCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEE
VSALWAPADRFDLSLNWASAHSKVLENPNSSLEGKRVTAVPRYTATVEANWRPAPGWRGT
EEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCC
VTWRRVGSFAVTQDNTQTYGGYSVFDLGAAYTFPGAGAYTLYAAIDNVANREYATAVSTV
EEEEECCCEEEECCCCCCCCCEEEEECCCEECCCCCCCEEHHHHHHHHCCCHHHHHHHHC
GYATAAPRTLRVGAQLSF
CCCCCCCCEEEECCEECC
>Mature Secondary Structure
MLRPALSLATRPHPLALLLAAAASLPALAHEDGATELQAVEVKGEALHGTGAAYSATRLE
CCCCCHHHCCCCCHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCCEECCCCCCCEECCCC
HDDIRDHRVARPQDLFRLVPGMNLTGYGLPGVADQVALRGFGNGGHGGDIGFVIDGIPLN
CCCCHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHEECCCCCCCCCEEEEEECCCHH
EAMSHADGYADLNVIVPLELERMTVLRGPVSALYGNYNRAGTVTLQTRKGGAYRDLDLNL
HHHHHCCCCCCEEEEEEEEHHHHHHHHCCHHHHHCCCCCCEEEEEEECCCCCEEEEECCC
GSYGTVDLQAALGAGFGGNQQLNLAAQHYRSDGFRDQSAGERSTLAGRWAVQATSDLEVA
CCCCCEEEHHHHCCCCCCCCEEEHHHHHHCCCCCCCCCCCCCHHCCCEEEEEECCCCEEE
VSARAHEAKADNPGYLTRAQFKDDPYGKDPRTQNDGAEKGFYTLRTDLNYQLAPELKLLS
EECCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEECCCHHHHH
FAYATRQDFTRWFSRGGAAAPSWRQREETYERDVLGAGFNLNGHHHLGAAGQLSWVGGVE
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCHH
TFSETTDYLKYENTRFRRRIGTAEFDRRFKLDNLAVFGEAALDAHRLFKPSIGLRWDRFT
HHHHHHHHHHCCCCHHHHHCCCHHHHCEEECCCEEEECHHHHHHHHHCCCCCCCEECCCC
GDCDRRGAETSAQPCARMDAVEHLSPKLGVRSQVADGVELRASWTEGFALANDMAKYSLG
CCHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHCC
ARHVDPNVFRQTELGANVRLSSQLVLDLAAYHLRSSDEINYDSVANEYINAGSTRRTGVE
CCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCEE
VSALWAPADRFDLSLNWASAHSKVLENPNSSLEGKRVTAVPRYTATVEANWRPAPGWRGT
EEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCC
VTWRRVGSFAVTQDNTQTYGGYSVFDLGAAYTFPGAGAYTLYAAIDNVANREYATAVSTV
EEEEECCCEEEECCCCCCCCCEEEEECCCEECCCCCCCEEHHHHHHHHCCCHHHHHHHHC
GYATAAPRTLRVGAQLSF
CCCCCCCCEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]