The gene/protein map for NC_008702 is currently unavailable.
Definition Azoarcus sp. BH72 chromosome, complete genome.
Accession NC_008702
Length 4,376,040

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The map label for this gene is linC [H]

Identifier: 119898245

GI number: 119898245

Start: 2149426

End: 2150184

Strand: Reverse

Name: linC [H]

Synonym: azo1954

Alternate gene names: 119898245

Gene position: 2150184-2149426 (Counterclockwise)

Preceding gene: 119898246

Following gene: 119898240

Centisome position: 49.14

GC content: 70.09

Gene sequence:

>759_bases
ATGCCCCACCCGACAGACCTGCAAGACAAAGTCATCATCGTTACCGGCGGCGGCAGCGGCATGGGCCGCGATGCCTGCCT
GGCGCTGGCGCGCGCCGGCGCGCGCGTCGTGATCGGCAACCGCCGCGCCGAGGCGGGCGAGGCAGTGGTCGAAGCGGTCC
GCGCACTCGGCGGGCAGGCGGTGTTCCGCGTCACCGACGTCTCGCGCGCGGCGGACTGCGCGGCCCTGGTGCGCTGCGCG
CTCGACCACTACGGCCGGCTCGACGGCGCGTTCAACAACGCCGGCCTGCAGCGCGAATTCGGCGACATCCACGACACGCC
CGATGCCGACCTGTCCGACGTGATCGACATCAACCTCAAGGGCGTGCTCTACATGATGAAGTACGAGGCCGCGGCGATGC
TCGACAGCGGAGGCGGCGCCATCGTCAACAACAGTTCGATCTTCGGGCTGAAGGCGATGCCGCGGCTGGCCTATTACGTC
GCGGCGAAGCACGGCATCGTCGGCGCCACGCGCGCGGCCGCGCTGGATTACGCGGCGCGCGGCATCCGGGTGAACGCGGT
GTGTCCGGGGCCGATCAAGACACCGAGCTACGACCGCGTCACCGGCGGCGACGACCACATGTACGACGAAGGCGTGCCGA
TGCGCCGGATCGGCATGCCGGGGGAGGTAAGCGCGGCGGTGCTGTGGTTGCTGTCGGCGCAGTCGTCGTATGTGAGCGGG
GCAGTGCTGGCGGTTGATGGGGGGATGAGCGCGGGATAG

Upstream 100 bases:

>100_bases
TGACCCCATCCCCATCCCAACCTTCCCCTTGAAGGGGAAGGAGCGAGACAGCGATGCGCTGAATCGCCAATTCCCGTTTT
CCCCTCTGAGAGCGATAACA

Downstream 100 bases:

>100_bases
GGGGAAAGGGCGCTACCGGGCGACGACGATCCAGCGTCCGCGAGCCAACTCCTTCCCCTTCAAGGGGAAGGCGGGGATGG
GGATGGGGTTCCGGGCGATG

Product: short-chain dehydrogenase family protein

Products: 3-oxoacyl-[acyl-carrier protein]; NADPH; H+

Alternate protein names: 2,5-DDOL dehydrogenase [H]

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MPHPTDLQDKVIIVTGGGSGMGRDACLALARAGARVVIGNRRAEAGEAVVEAVRALGGQAVFRVTDVSRAADCAALVRCA
LDHYGRLDGAFNNAGLQREFGDIHDTPDADLSDVIDINLKGVLYMMKYEAAAMLDSGGGAIVNNSSIFGLKAMPRLAYYV
AAKHGIVGATRAAALDYAARGIRVNAVCPGPIKTPSYDRVTGGDDHMYDEGVPMRRIGMPGEVSAAVLWLLSAQSSYVSG
AVLAVDGGMSAG

Sequences:

>Translated_252_residues
MPHPTDLQDKVIIVTGGGSGMGRDACLALARAGARVVIGNRRAEAGEAVVEAVRALGGQAVFRVTDVSRAADCAALVRCA
LDHYGRLDGAFNNAGLQREFGDIHDTPDADLSDVIDINLKGVLYMMKYEAAAMLDSGGGAIVNNSSIFGLKAMPRLAYYV
AAKHGIVGATRAAALDYAARGIRVNAVCPGPIKTPSYDRVTGGDDHMYDEGVPMRRIGMPGEVSAAVLWLLSAQSSYVSG
AVLAVDGGMSAG
>Mature_251_residues
PHPTDLQDKVIIVTGGGSGMGRDACLALARAGARVVIGNRRAEAGEAVVEAVRALGGQAVFRVTDVSRAADCAALVRCAL
DHYGRLDGAFNNAGLQREFGDIHDTPDADLSDVIDINLKGVLYMMKYEAAAMLDSGGGAIVNNSSIFGLKAMPRLAYYVA
AKHGIVGATRAAALDYAARGIRVNAVCPGPIKTPSYDRVTGGDDHMYDEGVPMRRIGMPGEVSAAVLWLLSAQSSYVSGA
VLAVDGGMSAG

Specific function: Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ) [H]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=32.6848249027237, Blast_Score=117, Evalue=9e-27,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=35.1239669421488, Blast_Score=117, Evalue=1e-26,
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=32.2448979591837, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=31.6017316017316, Blast_Score=100, Evalue=9e-22,
Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=32.8125, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI31542939, Length=203, Percent_Identity=35.4679802955665, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI5031737, Length=244, Percent_Identity=30.7377049180328, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI10190704, Length=257, Percent_Identity=32.295719844358, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=29.4820717131474, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=27.8225806451613, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=30.4347826086957, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=37.0588235294118, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=31.3829787234043, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI4504505, Length=200, Percent_Identity=31, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=29.8342541436464, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI7706318, Length=205, Percent_Identity=27.3170731707317, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI40807363, Length=210, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI83715985, Length=253, Percent_Identity=28.8537549407115, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=30.2040816326531, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI210032110, Length=195, Percent_Identity=25.1282051282051, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI209862901, Length=210, Percent_Identity=29.5238095238095, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI19923983, Length=210, Percent_Identity=29.5238095238095, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=33.0645161290323, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=35.0597609561753, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=31.8367346938775, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=34.5238095238095, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=31.8367346938775, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=30.4878048780488, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=32.1138211382114, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=30.2040816326531, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1790717, Length=247, Percent_Identity=29.1497975708502, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787526, Length=254, Percent_Identity=25.5905511811024, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786701, Length=209, Percent_Identity=30.622009569378, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=27.7992277992278, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=29.7520661157025, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=26.5625, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=30.8300395256917, Blast_Score=124, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=33.8709677419355, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=31.4741035856574, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71994604, Length=255, Percent_Identity=32.156862745098, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=33.8345864661654, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25147288, Length=243, Percent_Identity=33.7448559670782, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=30.1204819277108, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17531453, Length=258, Percent_Identity=31.7829457364341, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=31.496062992126, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=30.1526717557252, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=29.6577946768061, Blast_Score=98, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17551412, Length=273, Percent_Identity=30.4029304029304, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17562990, Length=256, Percent_Identity=32.03125, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=29.7709923664122, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=256, Percent_Identity=30.078125, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=256, Percent_Identity=30.078125, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17560332, Length=271, Percent_Identity=28.7822878228782, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17538486, Length=270, Percent_Identity=30.3703703703704, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=29.9610894941634, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17562908, Length=256, Percent_Identity=30.078125, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17538480, Length=261, Percent_Identity=30.2681992337165, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=30.7692307692308, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17538182, Length=251, Percent_Identity=29.4820717131474, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17564282, Length=198, Percent_Identity=29.7979797979798, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=29.7709923664122, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=276, Percent_Identity=26.4492753623188, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=27.7992277992278, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=28.5171102661597, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17568967, Length=190, Percent_Identity=32.6315789473684, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193203115, Length=195, Percent_Identity=26.1538461538462, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=191, Percent_Identity=26.1780104712042, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=259, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=211, Percent_Identity=28.436018957346, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=25, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=193, Percent_Identity=26.4248704663212, Blast_Score=67, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=198, Percent_Identity=29.7979797979798, Blast_Score=89, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6324126, Length=256, Percent_Identity=28.515625, Blast_Score=79, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=36.6935483870968, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=35.6862745098039, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI21357041, Length=259, Percent_Identity=33.976833976834, Blast_Score=120, Evalue=7e-28,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=34.9397590361446, Blast_Score=114, Evalue=6e-26,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=33.6, Blast_Score=114, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=32.6693227091633, Blast_Score=101, Evalue=6e-22,
Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=29.6, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=28.6274509803922, Blast_Score=98, Evalue=4e-21,
Organism=Drosophila melanogaster, GI24643142, Length=256, Percent_Identity=31.640625, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI18859837, Length=215, Percent_Identity=29.3023255813954, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21358495, Length=205, Percent_Identity=30.2439024390244, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI281364494, Length=238, Percent_Identity=28.9915966386555, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21357673, Length=216, Percent_Identity=27.3148148148148, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.1.1.100

Molecular weight: Translated: 26138; Mature: 26007

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MPHPTDLQDKVIIVTGGGSGMGRDACLALARAGARVVIGNRRAEAGEAVVEAVRALGGQA
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCE
VFRVTDVSRAADCAALVRCALDHYGRLDGAFNNAGLQREFGDIHDTPDADLSDVIDINLK
EEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCC
GVLYMMKYEAAAMLDSGGGAIVNNSSIFGLKAMPRLAYYVAAKHGIVGATRAAALDYAAR
EEEEEEEHHHHHEEECCCCEEEECCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
GIRVNAVCPGPIKTPSYDRVTGGDDHMYDEGVPMRRIGMPGEVSAAVLWLLSAQSSYVSG
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCHHCC
AVLAVDGGMSAG
EEEEECCCCCCC
>Mature Secondary Structure 
PHPTDLQDKVIIVTGGGSGMGRDACLALARAGARVVIGNRRAEAGEAVVEAVRALGGQA
CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCE
VFRVTDVSRAADCAALVRCALDHYGRLDGAFNNAGLQREFGDIHDTPDADLSDVIDINLK
EEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHEEEECCC
GVLYMMKYEAAAMLDSGGGAIVNNSSIFGLKAMPRLAYYVAAKHGIVGATRAAALDYAAR
EEEEEEEHHHHHEEECCCCEEEECCCEEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
GIRVNAVCPGPIKTPSYDRVTGGDDHMYDEGVPMRRIGMPGEVSAAVLWLLSAQSSYVSG
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHCCCCHHCC
AVLAVDGGMSAG
EEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: (3R)-3-hydroxyacyl-[acyl-carrier protein]; NADP+

Specific reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7515041; 12450824 [H]