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The map label for this gene is yfdE [H]

Identifier: 119898214

GI number: 119898214

Start: 2111082

End: 2112305

Strand: Reverse

Name: yfdE [H]

Synonym: azo1923

Alternate gene names: 119898214

Gene position: 2112305-2111082 (Counterclockwise)

Preceding gene: 119898215

Following gene: 119898213

Centisome position: 48.27

GC content: 68.3

Gene sequence:

>1224_bases
ATGCCCGGCGCACTTTCCCACATCCGCGTGCTAGACCTCTCCCGCATCCTCGCGGGCCCTTGGGCCGGCCAGTTGCTCGC
CGATCTCGGCGCCGACGTCATCAAGGTGGAACGCCCCGGCGCCGGCGACGACACCCGCGGCTGGGGTCCTCCCTTCCTGA
AAGACGAACAGGGCGAAAACACACCGGTCGCCGCCTACTACCTCTGCGCCAACCGCAACAAGCGCTCCATCACCATCGAC
ATCACCCGGCCGGAAGGCCAGGCGCTGGTGAAACAGCTCGCTGCCGAATCCGACGTGGTGCTGGAAAACTTCAAGCTCGG
CGGGCTCGCCCAGTACGGCCTCGACTATGCCGCGCTGAAGGCGATCAACCCGCGCCTCATCTACTGCTCCATCACCGGCT
TCGGCCAGGACGGCCCCTACGCACCGCGCGCCGGCTACGACTTCCTGATCCAGGGCCTCGGCGGGCTGATGAGCCTCACC
GGCCGCCCGGACGACGAAGAGGGTGGCGGGCCGATGAAGGTCGGCGTCGCGCTCACCGACATCCTCACCGGCCTGTATGC
CACCAACGCCGTGCTCGCCGCGCTCGCCTGGCGGGAGAAAAGCGGGGAAGGGCAGTTCATCGACCTCGCGCTGCTCGACG
TGCAGATCGCCTGCCTCGCCAACCAGGCGATGAACTACCTCACCACCGGGCAGAACCCCAAGCGGCTGGGCAACGCCCAC
CCCAACATCGTGCCCTACCAGGACTTCCCGACCGCCGACGGCTACATGATCCTCGCCATCGGCAACGATGGTCAGTTCGC
CCGCTTCTGCACCGAAGCCGGCGCCCCGGAACTCGCCGCCGACCCGCGCTACGCCACCAACAAGGCGCGGGTGGAAAACC
GCAACACGCTGATTCCCGCGCTCAAGCGCCTGACCATCGAGCGCAGCACCGCCGACTGGGTCGCCGCACTCGAAGCGCTC
GCCGTGCCCTGCGGCCCGATCAACACGCTGGCCGACGTCTTCGCCGACCCGCAGGTGCAGGCCCGCGGCCTCAAGGTCAC
GATGCCGCATCCGCTCGCTGGCGAAGTGCCGCTGGTCGCCAACCCCCTACGGCTTTCGGCCACCCCGGTCGAGTACCGCA
ACCCGCCCCCGCTGCTCGGCCAACATACCGAGCAGATCCTCAGCACCACGCTCGGCCTCAGCGCAACGCAGATCGAAGAA
TTGCGCGCCGCGGGCGTGATCTGA

Upstream 100 bases:

>100_bases
AAAAATACCCCGCGCGAGGCGCCAGTCGATAAAAAAGGTTTTCTTAACCCACGTAGAGCAACGACCACATCGTCACAAGA
GAACAGCAAGAGACCCCACC

Downstream 100 bases:

>100_bases
AACGACAACCCCAGGAGAAAGCGCGCTTGAAGATCCTCGTACCCGTAAAACGCGTGGTTGATTACAACGTGAAAGTCCGC
GTGAAGGCGGACGGCAGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MPGALSHIRVLDLSRILAGPWAGQLLADLGADVIKVERPGAGDDTRGWGPPFLKDEQGENTPVAAYYLCANRNKRSITID
ITRPEGQALVKQLAAESDVVLENFKLGGLAQYGLDYAALKAINPRLIYCSITGFGQDGPYAPRAGYDFLIQGLGGLMSLT
GRPDDEEGGGPMKVGVALTDILTGLYATNAVLAALAWREKSGEGQFIDLALLDVQIACLANQAMNYLTTGQNPKRLGNAH
PNIVPYQDFPTADGYMILAIGNDGQFARFCTEAGAPELAADPRYATNKARVENRNTLIPALKRLTIERSTADWVAALEAL
AVPCGPINTLADVFADPQVQARGLKVTMPHPLAGEVPLVANPLRLSATPVEYRNPPPLLGQHTEQILSTTLGLSATQIEE
LRAAGVI

Sequences:

>Translated_407_residues
MPGALSHIRVLDLSRILAGPWAGQLLADLGADVIKVERPGAGDDTRGWGPPFLKDEQGENTPVAAYYLCANRNKRSITID
ITRPEGQALVKQLAAESDVVLENFKLGGLAQYGLDYAALKAINPRLIYCSITGFGQDGPYAPRAGYDFLIQGLGGLMSLT
GRPDDEEGGGPMKVGVALTDILTGLYATNAVLAALAWREKSGEGQFIDLALLDVQIACLANQAMNYLTTGQNPKRLGNAH
PNIVPYQDFPTADGYMILAIGNDGQFARFCTEAGAPELAADPRYATNKARVENRNTLIPALKRLTIERSTADWVAALEAL
AVPCGPINTLADVFADPQVQARGLKVTMPHPLAGEVPLVANPLRLSATPVEYRNPPPLLGQHTEQILSTTLGLSATQIEE
LRAAGVI
>Mature_406_residues
PGALSHIRVLDLSRILAGPWAGQLLADLGADVIKVERPGAGDDTRGWGPPFLKDEQGENTPVAAYYLCANRNKRSITIDI
TRPEGQALVKQLAAESDVVLENFKLGGLAQYGLDYAALKAINPRLIYCSITGFGQDGPYAPRAGYDFLIQGLGGLMSLTG
RPDDEEGGGPMKVGVALTDILTGLYATNAVLAALAWREKSGEGQFIDLALLDVQIACLANQAMNYLTTGQNPKRLGNAHP
NIVPYQDFPTADGYMILAIGNDGQFARFCTEAGAPELAADPRYATNKARVENRNTLIPALKRLTIERSTADWVAALEALA
VPCGPINTLADVFADPQVQARGLKVTMPHPLAGEVPLVANPLRLSATPVEYRNPPPLLGQHTEQILSTTLGLSATQIEEL
RAAGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=403, Percent_Identity=47.394540942928, Blast_Score=370, Evalue=1e-103,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=44.5221445221445, Blast_Score=357, Evalue=1e-98,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=41.025641025641, Blast_Score=312, Evalue=3e-85,
Organism=Homo sapiens, GI300863126, Length=403, Percent_Identity=41.439205955335, Blast_Score=305, Evalue=4e-83,
Organism=Homo sapiens, GI42794625, Length=409, Percent_Identity=26.4058679706601, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI266456254, Length=409, Percent_Identity=26.4058679706601, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI266458397, Length=211, Percent_Identity=33.6492890995261, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI266458393, Length=211, Percent_Identity=33.6492890995261, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI266458395, Length=152, Percent_Identity=35.5263157894737, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI42822893, Length=152, Percent_Identity=35.5263157894737, Blast_Score=91, Evalue=2e-18,
Organism=Escherichia coli, GI87082093, Length=385, Percent_Identity=35.3246753246753, Blast_Score=252, Evalue=3e-68,
Organism=Escherichia coli, GI1788717, Length=431, Percent_Identity=30.8584686774942, Blast_Score=182, Evalue=3e-47,
Organism=Escherichia coli, GI1786222, Length=417, Percent_Identity=24.4604316546763, Blast_Score=90, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=264, Percent_Identity=26.1363636363636, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI32564160, Length=225, Percent_Identity=27.1111111111111, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648431, Length=403, Percent_Identity=46.4019851116625, Blast_Score=357, Evalue=8e-99,
Organism=Drosophila melanogaster, GI24585488, Length=352, Percent_Identity=26.9886363636364, Blast_Score=104, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43413; Mature: 43282

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGALSHIRVLDLSRILAGPWAGQLLADLGADVIKVERPGAGDDTRGWGPPFLKDEQGEN
CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
TPVAAYYLCANRNKRSITIDITRPEGQALVKQLAAESDVVLENFKLGGLAQYGLDYAALK
CCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCHHHHCCCHHHHH
AINPRLIYCSITGFGQDGPYAPRAGYDFLIQGLGGLMSLTGRPDDEEGGGPMKVGVALTD
HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHH
ILTGLYATNAVLAALAWREKSGEGQFIDLALLDVQIACLANQAMNYLTTGQNPKRLGNAH
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHCCCC
PNIVPYQDFPTADGYMILAIGNDGQFARFCTEAGAPELAADPRYATNKARVENRNTLIPA
CCEECCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHHH
LKRLTIERSTADWVAALEALAVPCGPINTLADVFADPQVQARGLKVTMPHPLAGEVPLVA
HHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEECCCEEEECCCCCCCCCCEEE
NPLRLSATPVEYRNPPPLLGQHTEQILSTTLGLSATQIEELRAAGVI
CCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
PGALSHIRVLDLSRILAGPWAGQLLADLGADVIKVERPGAGDDTRGWGPPFLKDEQGEN
CCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCC
TPVAAYYLCANRNKRSITIDITRPEGQALVKQLAAESDVVLENFKLGGLAQYGLDYAALK
CCEEEEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCCEEEECCCCCCHHHHCCCHHHHH
AINPRLIYCSITGFGQDGPYAPRAGYDFLIQGLGGLMSLTGRPDDEEGGGPMKVGVALTD
HCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHH
ILTGLYATNAVLAALAWREKSGEGQFIDLALLDVQIACLANQAMNYLTTGQNPKRLGNAH
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCHHHHCCCC
PNIVPYQDFPTADGYMILAIGNDGQFARFCTEAGAPELAADPRYATNKARVENRNTLIPA
CCEECCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHHH
LKRLTIERSTADWVAALEALAVPCGPINTLADVFADPQVQARGLKVTMPHPLAGEVPLVA
HHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEECCCEEEECCCCCCCCCCEEE
NPLRLSATPVEYRNPPPLLGQHTEQILSTTLGLSATQIEELRAAGVI
CCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]