| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is glgB2 [H]
Identifier: 119898087
GI number: 119898087
Start: 1965782
End: 1967599
Strand: Direct
Name: glgB2 [H]
Synonym: azo1796
Alternate gene names: 119898087
Gene position: 1965782-1967599 (Clockwise)
Preceding gene: 119898086
Following gene: 119898088
Centisome position: 44.92
GC content: 73.38
Gene sequence:
>1818_bases ATGAACGGCCCCGACTTCGCGCCCCCCGGCCCAGCGCCCACCGGCTGCCGCCACTACGCCGGCATGGGCGCGCGCCCGGT GACGGTGGACGGGCTGGCCGGCACGCGCTTTCGCGTATGGGCGCCGCACGCGCGTGCGGTGGCGGTGGCGCTGGCGCCCG GCAACGAGCGCGCCGCGCTGTATGCGGGCGCCGACGGCCTGTGGGAAGGCTTCGTGCCCGGCGTCGGCCACGGCGACAGC TACGCCTTCCGCATCGAGAGCGCACGCGGCGAGGTGCTCGCGAAGGCCGACCCCTATGCCAGCGCGTGCGAACTGCCGCC CGGCATCGGCTCGCGGGTGTGGGACCTCGCCTACCGCTGGTGGGACGCCGACTGGATGCGCGCCCGCGCCGGGCGACGGG CGGCCGACGCGCCGCTGTCGATCTACGAGGTGCATCTCGGCTCCTGGCGCGCGGCCGAGGCGGGCGAGCGCTTCGCCGGC TACCGCCGCAGCGCCGACGAACTGGCGCCCTACCTGATGCGGCTGGGTTTCACCCATGTGGAGCTGATGCCGCTGGTGGA GCACGGCGACTACGGCGACTGGGGCTACCGCAGCGGCAGCCGCTTTGCGCCGAGCGCGCGCTACGGCACGCCGCAGGACC TGATGTACCTGGTCGACCGCCTGCATCAGGCCGGGCTGGGCGTGATCCTCGACTGGGTGCCGGCGAGTTTTCCGGCGGAG TCGCACGGGCTGGTGCGCTTCGACGGCACGCCGCTGTACGAGGGCGGCCGCGCCCGCGCCGAGGGCGACGAGATCGCTTT CGACCTCACTGATGACGCGGTCGGCGCCTTCCTGATCGACAGCGCGCTGTACTGGCTGGACACCTACCACATCGACGGCC TGCGGCTGTCCGGCGTGGATCGCCTGCTGCGCGGGCAGCCGGGCGCCGACGACTTCCTGCGCCGGCTGACGCGCTGCATC CATGCCGAACACCCGGGCGTGATGGTGATCGCCGAGGCGGACGAGGCCGACGAGGCCTTGCGCACCGCGCTGACCCGCCC CGAGGCCGTGGGCGGCTATGGCTGCGACCTCGCCTGGAACCTGGCGTGGGTGCACGACGCGCTCGACTACTTCGTGCGCG ACCCCGGCCAGCGCCACTACCACCAGGGCAAGCTGATGGACGCCGCGGCCGGCGCGGCCGCGGCGCGCTCGGTGCTGCCG CTGGCGCACGCCGAGGTGGTGTATGGACGCCGCGCGCTGCTGGAAAAGCAGCGCGGCGACTCGTGGCAGAAACGCGCCAG CCTGCGCGCGCTGTTCGGCCTGATGTGGGCTTTTCCGGGCCGCAAGCTGCTGTTCATGGGCGGCGAACTCGGCGTTGCCT GCGAGTGGGACCCGCGCGGCTGCCTCGACTGGTCGCTGGAAAACACGCCGGCCAACGCCGCCATCCAGCGCTGGGTGGCC GACCTCAACCATCACTACCGCGCTCACCCGGCGCTGCATGCCGGCGATGCCGCGCCCGGCGGGCTGGAGTGGGTGGCGGC GAACGACGCCAGCGACAGCGTGCTCGCCTTCCTGCGCCGGCCGGCGCGCGAAGAGGAGCCGACGCTGCTGGTGGCCTGCA ACCTGACCCTGCTGCCGCGCTTCGACCACGCGCTGGGCGTGTCGCGCGGGGGCTGGTGGACCGAGTTGCTGAACAGCGAC GCCGAAGCCTACGGCGGCAGCGGACTCGGCAATCAGGGCGGGCTGGCTGCCCAGGAGGTGGATTGGCACGGCCAGCGCCA CGCCCTCGCGCTGACCCTTCCACCGCTGTCGGTGGTGTTTCTGGAGAGCCCGCGATGA
Upstream 100 bases:
>100_bases TGTCGGTGCGCCAGCGCCGCCGCCCGCAGGCGGAGGCCGAGCCGGCCCCGCCGCGCGTCGCGCGTGCGCCGATGCCGGTT GCGGCCGTGGGGCTGTACCT
Downstream 100 bases:
>100_bases ACCCGGCGGAGAGGGAAGCCCCGATTCCGGTTCCGGGACGCGCGGCGTTCGACGATTCCTCCGCGCGCGGCGTCCGCCGC GCCGGGGCGTTTTCTGGAGG
Product: glycogen branching enzyme
Products: NA
Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]
Number of amino acids: Translated: 605; Mature: 605
Protein sequence:
>605_residues MNGPDFAPPGPAPTGCRHYAGMGARPVTVDGLAGTRFRVWAPHARAVAVALAPGNERAALYAGADGLWEGFVPGVGHGDS YAFRIESARGEVLAKADPYASACELPPGIGSRVWDLAYRWWDADWMRARAGRRAADAPLSIYEVHLGSWRAAEAGERFAG YRRSADELAPYLMRLGFTHVELMPLVEHGDYGDWGYRSGSRFAPSARYGTPQDLMYLVDRLHQAGLGVILDWVPASFPAE SHGLVRFDGTPLYEGGRARAEGDEIAFDLTDDAVGAFLIDSALYWLDTYHIDGLRLSGVDRLLRGQPGADDFLRRLTRCI HAEHPGVMVIAEADEADEALRTALTRPEAVGGYGCDLAWNLAWVHDALDYFVRDPGQRHYHQGKLMDAAAGAAAARSVLP LAHAEVVYGRRALLEKQRGDSWQKRASLRALFGLMWAFPGRKLLFMGGELGVACEWDPRGCLDWSLENTPANAAIQRWVA DLNHHYRAHPALHAGDAAPGGLEWVAANDASDSVLAFLRRPAREEEPTLLVACNLTLLPRFDHALGVSRGGWWTELLNSD AEAYGGSGLGNQGGLAAQEVDWHGQRHALALTLPPLSVVFLESPR
Sequences:
>Translated_605_residues MNGPDFAPPGPAPTGCRHYAGMGARPVTVDGLAGTRFRVWAPHARAVAVALAPGNERAALYAGADGLWEGFVPGVGHGDS YAFRIESARGEVLAKADPYASACELPPGIGSRVWDLAYRWWDADWMRARAGRRAADAPLSIYEVHLGSWRAAEAGERFAG YRRSADELAPYLMRLGFTHVELMPLVEHGDYGDWGYRSGSRFAPSARYGTPQDLMYLVDRLHQAGLGVILDWVPASFPAE SHGLVRFDGTPLYEGGRARAEGDEIAFDLTDDAVGAFLIDSALYWLDTYHIDGLRLSGVDRLLRGQPGADDFLRRLTRCI HAEHPGVMVIAEADEADEALRTALTRPEAVGGYGCDLAWNLAWVHDALDYFVRDPGQRHYHQGKLMDAAAGAAAARSVLP LAHAEVVYGRRALLEKQRGDSWQKRASLRALFGLMWAFPGRKLLFMGGELGVACEWDPRGCLDWSLENTPANAAIQRWVA DLNHHYRAHPALHAGDAAPGGLEWVAANDASDSVLAFLRRPAREEEPTLLVACNLTLLPRFDHALGVSRGGWWTELLNSD AEAYGGSGLGNQGGLAAQEVDWHGQRHALALTLPPLSVVFLESPR >Mature_605_residues MNGPDFAPPGPAPTGCRHYAGMGARPVTVDGLAGTRFRVWAPHARAVAVALAPGNERAALYAGADGLWEGFVPGVGHGDS YAFRIESARGEVLAKADPYASACELPPGIGSRVWDLAYRWWDADWMRARAGRRAADAPLSIYEVHLGSWRAAEAGERFAG YRRSADELAPYLMRLGFTHVELMPLVEHGDYGDWGYRSGSRFAPSARYGTPQDLMYLVDRLHQAGLGVILDWVPASFPAE SHGLVRFDGTPLYEGGRARAEGDEIAFDLTDDAVGAFLIDSALYWLDTYHIDGLRLSGVDRLLRGQPGADDFLRRLTRCI HAEHPGVMVIAEADEADEALRTALTRPEAVGGYGCDLAWNLAWVHDALDYFVRDPGQRHYHQGKLMDAAAGAAAARSVLP LAHAEVVYGRRALLEKQRGDSWQKRASLRALFGLMWAFPGRKLLFMGGELGVACEWDPRGCLDWSLENTPANAAIQRWVA DLNHHYRAHPALHAGDAAPGGLEWVAANDASDSVLAFLRRPAREEEPTLLVACNLTLLPRFDHALGVSRGGWWTELLNSD AEAYGGSGLGNQGGLAAQEVDWHGQRHALALTLPPLSVVFLESPR
Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]
COG id: COG0296
COG function: function code G; 1,4-alpha-glucan branching enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 13 family [H]
Homologues:
Organism=Homo sapiens, GI189458812, Length=361, Percent_Identity=29.0858725761773, Blast_Score=105, Evalue=1e-22, Organism=Escherichia coli, GI1789839, Length=616, Percent_Identity=39.2857142857143, Blast_Score=434, Evalue=1e-123, Organism=Caenorhabditis elegans, GI17554896, Length=662, Percent_Identity=24.4712990936556, Blast_Score=114, Evalue=2e-25, Organism=Caenorhabditis elegans, GI32564391, Length=625, Percent_Identity=24.16, Blast_Score=109, Evalue=4e-24, Organism=Saccharomyces cerevisiae, GI6320826, Length=258, Percent_Identity=28.2945736434109, Blast_Score=91, Evalue=5e-19, Organism=Drosophila melanogaster, GI28573410, Length=363, Percent_Identity=27.5482093663912, Blast_Score=108, Evalue=9e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006407 - InterPro: IPR006048 - InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR004193 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]
EC number: =2.4.1.18 [H]
Molecular weight: Translated: 65944; Mature: 65944
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGPDFAPPGPAPTGCRHYAGMGARPVTVDGLAGTRFRVWAPHARAVAVALAPGNERAAL CCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCEEEEECCCCEEEEEEECCCCCCEEE YAGADGLWEGFVPGVGHGDSYAFRIESARGEVLAKADPYASACELPPGIGSRVWDLAYRW EECCCCHHHCCCCCCCCCCCEEEEEECCCCCEEECCCCCCHHCCCCCCCCHHHHHHHHHH WDADWMRARAGRRAADAPLSIYEVHLGSWRAAEAGERFAGYRRSADELAPYLMRLGFTHV CCHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCE ELMPLVEHGDYGDWGYRSGSRFAPSARYGTPQDLMYLVDRLHQAGLGVILDWVPASFPAE EEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC SHGLVRFDGTPLYEGGRARAEGDEIAFDLTDDAVGAFLIDSALYWLDTYHIDGLRLSGVD CCCEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHEEEECCEEECCHH RLLRGQPGADDFLRRLTRCIHAEHPGVMVIAEADEADEALRTALTRPEAVGGYGCDLAWN HHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEH LAWVHDALDYFVRDPGQRHYHQGKLMDAAAGAAAARSVLPLAHAEVVYGRRALLEKQRGD HHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SWQKRASLRALFGLMWAFPGRKLLFMGGELGVACEWDPRGCLDWSLENTPANAAIQRWVA HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCEECCCCCCCHHHHHHHHHH DLNHHYRAHPALHAGDAAPGGLEWVAANDASDSVLAFLRRPAREEEPTLLVACNLTLLPR HHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECEEEECC FDHALGVSRGGWWTELLNSDAEAYGGSGLGNQGGLAAQEVDWHGQRHALALTLPPLSVVF CHHHHCCCCCCHHHHHHCCCHHHCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCEEEEE LESPR EECCC >Mature Secondary Structure MNGPDFAPPGPAPTGCRHYAGMGARPVTVDGLAGTRFRVWAPHARAVAVALAPGNERAAL CCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCEEEEECCCCEEEEEEECCCCCCEEE YAGADGLWEGFVPGVGHGDSYAFRIESARGEVLAKADPYASACELPPGIGSRVWDLAYRW EECCCCHHHCCCCCCCCCCCEEEEEECCCCCEEECCCCCCHHCCCCCCCCHHHHHHHHHH WDADWMRARAGRRAADAPLSIYEVHLGSWRAAEAGERFAGYRRSADELAPYLMRLGFTHV CCHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCE ELMPLVEHGDYGDWGYRSGSRFAPSARYGTPQDLMYLVDRLHQAGLGVILDWVPASFPAE EEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC SHGLVRFDGTPLYEGGRARAEGDEIAFDLTDDAVGAFLIDSALYWLDTYHIDGLRLSGVD CCCEEEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHEEEECCEEECCHH RLLRGQPGADDFLRRLTRCIHAEHPGVMVIAEADEADEALRTALTRPEAVGGYGCDLAWN HHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEH LAWVHDALDYFVRDPGQRHYHQGKLMDAAAGAAAARSVLPLAHAEVVYGRRALLEKQRGD HHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC SWQKRASLRALFGLMWAFPGRKLLFMGGELGVACEWDPRGCLDWSLENTPANAAIQRWVA HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCEECCCCCCCHHHHHHHHHH DLNHHYRAHPALHAGDAAPGGLEWVAANDASDSVLAFLRRPAREEEPTLLVACNLTLLPR HHHCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECEEEECC FDHALGVSRGGWWTELLNSDAEAYGGSGLGNQGGLAAQEVDWHGQRHALALTLPPLSVVF CHHHHCCCCCCHHHHHHCCCHHHCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCEEEEE LESPR EECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]