| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is ligD
Identifier: 119898032
GI number: 119898032
Start: 1908782
End: 1911427
Strand: Direct
Name: ligD
Synonym: azo1741
Alternate gene names: NA
Gene position: 1908782-1911427 (Clockwise)
Preceding gene: 119898031
Following gene: 119898033
Centisome position: 43.62
GC content: 71.62
Gene sequence:
>2646_bases ATGAAGGCACACGACAAACGCCGCGATGAAGCGCGCGGCATGAAGCCGGGCGCGATCGCCGCTTTGGCGGAATACGCCCG CAAGCGCGACTTCTCGATCACCGCGGAGCCGCCGGTGCGCGGCGCGCGGCCGCGCGCCGAGGGCGCCCTCGGCTTCGTCG TGCAGAAGCATGCCGCGCGCCGCCTGCACTACGACTTCCGCCTGGAACTCGACGGCACGCTGAAGAGCTGGGCGATCCCC AAGGGGCCGAGCCTGGACCCGCGGGTCAAGCGCCTGGCGGTGCACGTCGAAGACCATCCGCTCGACTACGCCGACTTCGA GGGCCGCATTCCGCAGGGCCAGTACGGCGGCGGCGACGTCATCGTGTGGGACCGCGGGTTGTGGCAGCCGCGCGACCCCG ATCCCGCGGCGGCCTACCGCGCCGGCAAGCTCAGCTTCCACCTGCTTGGCGAAAAGCTCTCCGGCGGCTGGACCCTGGTT CGCACCCGCGACGGCGGCAGCGGCGACAAGGCGCAATGGCTGCTGATCAAGGATGCGGACGGCGCTGCGCGGCCGCAGTC GGACTACGACGTGGTCGTCGCACGGCCCGAGAGCGTATTGACCCACGCTCAACTGCCAGCGCGGCGCGATGCCGCCGGCG CGGCGGGCGGCGAGGGCGCGAAGAAGGCCCGCGTGGCAGCGTTGCGCGGCGACGCGGCACGCAATCCGGCCTGGATCGCG CCGGAACTCGCCACCGCGGTGGAGGCGCCACCGCCGGGCGAATGGCGCTACGAACTCAAGTTCGATGGCTACCGCATGCT CGCACGGGTGGAAAACGGCCGCGCGCGGCTCTACACCCGCAACCATCACGACTGGACCGCAAAACTGGCACCGCTGCGCG AGGCGGTGGAAAGCCTGGGTGCGGACAGCGCCTGGCTGGACGGCGAGGTGGTGGTGACCGACGCCCAGGGCGTGCCCGAT TTCCAGGCCCTGCAGAACGCGCTGGAGCTGGGGCGTGACGCGGACCTGCGCTATTTCCTGTTCGACCTGCCCTACCTGGA CGGCGAAGACCTGCGCAAGCTGCCGCTGGAAGCGCGCCGAGCCCGCCTGCGCGCACTGCTGGGCGCGCACGACCATCCGC GGCTGGCGTATTCGGAGGACTTTCCGGTGCCGCCGCAGGACATCCTCGCCAGCGCCTGCGAATTGCGCATCGAGGGCGTC ATCGGCAAGCGCGCCGGCAGCCCCTACCGTTCGGTCCGCAGCACCGACTGGATCAAGCTCAAATGCCGCCAGCGGCAGGA GTTCGTGATCGTCGGCTACAGCGCACCGCAGGGCGGGCGCCAGGGGTTTGGCGCCTTGCTGCTGGCGGTGCACGACGAAG CCGCGGGCGGGCGCCTGCGCTACGCCGGCAAGGTCGGCAGCGGTTTCAGCGGCGCCAGCCTGAAGGCCTTGCACCAGCGC ATGCAGCCACTGCGCCGCCCGACCCCGGCGCTGGCGCTGCCGGTCGATAGCAGCGTCACCCGCGGCGCCACCTGGCTGGA GCCGCGCCTGCTGTGCGAGGTGGCGTTTGCGATGTGGACCCGCGACGGGCTGGTGCGCCATGCGGTGTTCCAGGGCCTGC GCGACGACAAACCCGCCGCCGACGCGGTGCGCGAGCGCGCATTGCCCGCCACCGCCGTGGCACGCATTCAAGGTGACGGA CGCGATGACGAAGACGCGCCGGCGCCGACCGCCAAGGTGCCGTCGAACGGCGTCCGCGCCGGCGCGAGGCGCAGTCCCGG CACGCTCGCGGGCGTTGCGATCAGCAACCCGGACCGCGTCATCGACGCCGCCAGCGGCGTGACCAAGGGCGAACTCGCCA CCTTCTACTGCCGCATCGGCGCGCAGCTGCTGCCCCATCTGGCGGGGCGGCCGCTGTCCATCCTGCGCGCGCCCACCGGC ATCGACGGCGAACGCTTCTTCCAGCGCCATGCCGACAAGATGTCGATGGCGGGCGTGCATCTGCTACCGCCCGACCTCGA CCCGGACGGCGAGCGCCTGATGATGGTGGATACGCTGGAGGGCGTGGTCGGCGCGGCGCAGATGGGCACGATCGAGTTCC ACACCTGGAATGCCACCGCCGACCGCATCGAGCGCCCCGACCGCATCGTGTTCGACCTCGACCCCGACCCCGCGCTGCCG TGGTCGCGCATGGTGGAGGCGACCCGGCTGGTGCTGACGCTGCTGGACGAAATCGGACTGGATGCCTTCCTGAAGACCAG CGGCGGCAAGGGCATCCACGTGGTGGTGCCGCTCGCGCGGCGGCACGACTGGGAGGCGCTGAAGCAGTTCTCGCGCGCGG TCACCCGGCATCTGGCGCGCATCCTGCCTCAGCGCTTTGCGGACCGCATGGGGCCGCAGAACCGGGTAGGGCGCATCTTC GTTGACTACCTGCGCAACCAGCGCGCGGCGAGCACGGTGTCGGCCTATTCGGTGCGTGCGCGCCCCGGGCTGGCGGTGTC GGTGCCGATCACCCGCCAGGAGCTGGAGCGCATCGACGGCGCCGACCAATGGACGGTGCGCAACCTGCACGAGCGGCTGG CGCGGCTCACCCGCGACCCATGGGAGGGCTACGCCAACCGCCAGGTGATCAGCGCCGCGATGCGGGCCGCGGTGGCGGCG GACTGA
Upstream 100 bases:
>100_bases GAGCGAGGCGCCGGCCGCGGGTCCGCGCACCCGCCGCGCCCCGGCACGAAAGAAAACAGGGTAAGCGCGCCGGCCGCAAG GCGGCCGCGAGGGAGACGAG
Downstream 100 bases:
>100_bases CGGATGGGGTTGGACAGCCGCCGCCTTGAAGGGCGTCCGGCCGGCCCGCGACCGATCGTGCGTGCCGGGCCCGTGGGGCT CTTTCGGGCTGCGTTCATCA
Product: ATP-dependent DNA ligase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 881; Mature: 881
Protein sequence:
>881_residues MKAHDKRRDEARGMKPGAIAALAEYARKRDFSITAEPPVRGARPRAEGALGFVVQKHAARRLHYDFRLELDGTLKSWAIP KGPSLDPRVKRLAVHVEDHPLDYADFEGRIPQGQYGGGDVIVWDRGLWQPRDPDPAAAYRAGKLSFHLLGEKLSGGWTLV RTRDGGSGDKAQWLLIKDADGAARPQSDYDVVVARPESVLTHAQLPARRDAAGAAGGEGAKKARVAALRGDAARNPAWIA PELATAVEAPPPGEWRYELKFDGYRMLARVENGRARLYTRNHHDWTAKLAPLREAVESLGADSAWLDGEVVVTDAQGVPD FQALQNALELGRDADLRYFLFDLPYLDGEDLRKLPLEARRARLRALLGAHDHPRLAYSEDFPVPPQDILASACELRIEGV IGKRAGSPYRSVRSTDWIKLKCRQRQEFVIVGYSAPQGGRQGFGALLLAVHDEAAGGRLRYAGKVGSGFSGASLKALHQR MQPLRRPTPALALPVDSSVTRGATWLEPRLLCEVAFAMWTRDGLVRHAVFQGLRDDKPAADAVRERALPATAVARIQGDG RDDEDAPAPTAKVPSNGVRAGARRSPGTLAGVAISNPDRVIDAASGVTKGELATFYCRIGAQLLPHLAGRPLSILRAPTG IDGERFFQRHADKMSMAGVHLLPPDLDPDGERLMMVDTLEGVVGAAQMGTIEFHTWNATADRIERPDRIVFDLDPDPALP WSRMVEATRLVLTLLDEIGLDAFLKTSGGKGIHVVVPLARRHDWEALKQFSRAVTRHLARILPQRFADRMGPQNRVGRIF VDYLRNQRAASTVSAYSVRARPGLAVSVPITRQELERIDGADQWTVRNLHERLARLTRDPWEGYANRQVISAAMRAAVAA D
Sequences:
>Translated_881_residues MKAHDKRRDEARGMKPGAIAALAEYARKRDFSITAEPPVRGARPRAEGALGFVVQKHAARRLHYDFRLELDGTLKSWAIP KGPSLDPRVKRLAVHVEDHPLDYADFEGRIPQGQYGGGDVIVWDRGLWQPRDPDPAAAYRAGKLSFHLLGEKLSGGWTLV RTRDGGSGDKAQWLLIKDADGAARPQSDYDVVVARPESVLTHAQLPARRDAAGAAGGEGAKKARVAALRGDAARNPAWIA PELATAVEAPPPGEWRYELKFDGYRMLARVENGRARLYTRNHHDWTAKLAPLREAVESLGADSAWLDGEVVVTDAQGVPD FQALQNALELGRDADLRYFLFDLPYLDGEDLRKLPLEARRARLRALLGAHDHPRLAYSEDFPVPPQDILASACELRIEGV IGKRAGSPYRSVRSTDWIKLKCRQRQEFVIVGYSAPQGGRQGFGALLLAVHDEAAGGRLRYAGKVGSGFSGASLKALHQR MQPLRRPTPALALPVDSSVTRGATWLEPRLLCEVAFAMWTRDGLVRHAVFQGLRDDKPAADAVRERALPATAVARIQGDG RDDEDAPAPTAKVPSNGVRAGARRSPGTLAGVAISNPDRVIDAASGVTKGELATFYCRIGAQLLPHLAGRPLSILRAPTG IDGERFFQRHADKMSMAGVHLLPPDLDPDGERLMMVDTLEGVVGAAQMGTIEFHTWNATADRIERPDRIVFDLDPDPALP WSRMVEATRLVLTLLDEIGLDAFLKTSGGKGIHVVVPLARRHDWEALKQFSRAVTRHLARILPQRFADRMGPQNRVGRIF VDYLRNQRAASTVSAYSVRARPGLAVSVPITRQELERIDGADQWTVRNLHERLARLTRDPWEGYANRQVISAAMRAAVAA D >Mature_881_residues MKAHDKRRDEARGMKPGAIAALAEYARKRDFSITAEPPVRGARPRAEGALGFVVQKHAARRLHYDFRLELDGTLKSWAIP KGPSLDPRVKRLAVHVEDHPLDYADFEGRIPQGQYGGGDVIVWDRGLWQPRDPDPAAAYRAGKLSFHLLGEKLSGGWTLV RTRDGGSGDKAQWLLIKDADGAARPQSDYDVVVARPESVLTHAQLPARRDAAGAAGGEGAKKARVAALRGDAARNPAWIA PELATAVEAPPPGEWRYELKFDGYRMLARVENGRARLYTRNHHDWTAKLAPLREAVESLGADSAWLDGEVVVTDAQGVPD FQALQNALELGRDADLRYFLFDLPYLDGEDLRKLPLEARRARLRALLGAHDHPRLAYSEDFPVPPQDILASACELRIEGV IGKRAGSPYRSVRSTDWIKLKCRQRQEFVIVGYSAPQGGRQGFGALLLAVHDEAAGGRLRYAGKVGSGFSGASLKALHQR MQPLRRPTPALALPVDSSVTRGATWLEPRLLCEVAFAMWTRDGLVRHAVFQGLRDDKPAADAVRERALPATAVARIQGDG RDDEDAPAPTAKVPSNGVRAGARRSPGTLAGVAISNPDRVIDAASGVTKGELATFYCRIGAQLLPHLAGRPLSILRAPTG IDGERFFQRHADKMSMAGVHLLPPDLDPDGERLMMVDTLEGVVGAAQMGTIEFHTWNATADRIERPDRIVFDLDPDPALP WSRMVEATRLVLTLLDEIGLDAFLKTSGGKGIHVVVPLARRHDWEALKQFSRAVTRHLARILPQRFADRMGPQNRVGRIF VDYLRNQRAASTVSAYSVRARPGLAVSVPITRQELERIDGADQWTVRNLHERLARLTRDPWEGYANRQVISAAMRAAVAA D
Specific function: Unknown
COG id: COG1793
COG function: function code L; ATP-dependent DNA ligase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent DNA ligase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012309 - InterPro: IPR012310 - InterPro: IPR014146 - InterPro: IPR002755 - InterPro: IPR014144 - InterPro: IPR014145 - InterPro: IPR012340 - InterPro: IPR016027 [H]
Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]
EC number: NA
Molecular weight: Translated: 96734; Mature: 96734
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: PS50160 DNA_LIGASE_A3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAHDKRRDEARGMKPGAIAALAEYARKRDFSITAEPPVRGARPRAEGALGFVVQKHAAR CCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHH RLHYDFRLELDGTLKSWAIPKGPSLDPRVKRLAVHVEDHPLDYADFEGRIPQGQYGGGDV HCCEEEEEEECCCHHHCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCE IVWDRGLWQPRDPDPAAAYRAGKLSFHLLGEKLSGGWTLVRTRDGGSGDKAQWLLIKDAD EEECCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCCCCCEEEEEEECCC GAARPQSDYDVVVARPESVLTHAQLPARRDAAGAAGGEGAKKARVAALRGDAARNPAWIA CCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHEEECCCCCCCCCEEC PELATAVEAPPPGEWRYELKFDGYRMLARVENGRARLYTRNHHDWTAKLAPLREAVESLG HHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCC ADSAWLDGEVVVTDAQGVPDFQALQNALELGRDADLRYFLFDLPYLDGEDLRKLPLEARR CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCHHHHH ARLRALLGAHDHPRLAYSEDFPVPPQDILASACELRIEGVIGKRAGSPYRSVRSTDWIKL HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCHHHHCCCCEEEE KCRQRQEFVIVGYSAPQGGRQGFGALLLAVHDEAAGGRLRYAGKVGSGFSGASLKALHQR EECCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHH MQPLRRPTPALALPVDSSVTRGATWLEPRLLCEVAFAMWTRDGLVRHAVFQGLRDDKPAA HHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DAVRERALPATAVARIQGDGRDDEDAPAPTAKVPSNGVRAGARRSPGTLAGVAISNPDRV HHHHHHCCCHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHH IDAASGVTKGELATFYCRIGAQLLPHLAGRPLSILRAPTGIDGERFFQRHADKMSMAGVH HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCEE LLPPDLDPDGERLMMVDTLEGVVGAAQMGTIEFHTWNATADRIERPDRIVFDLDPDPALP ECCCCCCCCCCEEEEEEHHHHHHHHHHCCEEEEEECCCCHHHHCCCCEEEEECCCCCCCC WSRMVEATRLVLTLLDEIGLDAFLKTSGGKGIHVVVPLARRHDWEALKQFSRAVTRHLAR HHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH ILPQRFADRMGPQNRVGRIFVDYLRNQRAASTVSAYSVRARPGLAVSVPITRQELERIDG HHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHEEEECCCCCEEECCCCHHHHHHCCC ADQWTVRNLHERLARLTRDPWEGYANRQVISAAMRAAVAAD CCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MKAHDKRRDEARGMKPGAIAALAEYARKRDFSITAEPPVRGARPRAEGALGFVVQKHAAR CCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHH RLHYDFRLELDGTLKSWAIPKGPSLDPRVKRLAVHVEDHPLDYADFEGRIPQGQYGGGDV HCCEEEEEEECCCHHHCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCE IVWDRGLWQPRDPDPAAAYRAGKLSFHLLGEKLSGGWTLVRTRDGGSGDKAQWLLIKDAD EEECCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCEEEEEECCCCCCCCEEEEEEECCC GAARPQSDYDVVVARPESVLTHAQLPARRDAAGAAGGEGAKKARVAALRGDAARNPAWIA CCCCCCCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHEEECCCCCCCCCEEC PELATAVEAPPPGEWRYELKFDGYRMLARVENGRARLYTRNHHDWTAKLAPLREAVESLG HHHHHHCCCCCCCCEEEEEEECCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCC ADSAWLDGEVVVTDAQGVPDFQALQNALELGRDADLRYFLFDLPYLDGEDLRKLPLEARR CCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCHHHHH ARLRALLGAHDHPRLAYSEDFPVPPQDILASACELRIEGVIGKRAGSPYRSVRSTDWIKL HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHEEEEEEEECCCCCCHHHHCCCCEEEE KCRQRQEFVIVGYSAPQGGRQGFGALLLAVHDEAAGGRLRYAGKVGSGFSGASLKALHQR EECCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCHHHHHHHHH MQPLRRPTPALALPVDSSVTRGATWLEPRLLCEVAFAMWTRDGLVRHAVFQGLRDDKPAA HHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DAVRERALPATAVARIQGDGRDDEDAPAPTAKVPSNGVRAGARRSPGTLAGVAISNPDRV HHHHHHCCCHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHH IDAASGVTKGELATFYCRIGAQLLPHLAGRPLSILRAPTGIDGERFFQRHADKMSMAGVH HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCEE LLPPDLDPDGERLMMVDTLEGVVGAAQMGTIEFHTWNATADRIERPDRIVFDLDPDPALP ECCCCCCCCCCEEEEEEHHHHHHHHHHCCEEEEEECCCCHHHHCCCCEEEEECCCCCCCC WSRMVEATRLVLTLLDEIGLDAFLKTSGGKGIHVVVPLARRHDWEALKQFSRAVTRHLAR HHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHH ILPQRFADRMGPQNRVGRIFVDYLRNQRAASTVSAYSVRARPGLAVSVPITRQELERIDG HHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHEEEECCCCCEEECCCCHHHHHHCCC ADQWTVRNLHERLARLTRDPWEGYANRQVISAAMRAAVAAD CCHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]