BacMap

Definition	Azoarcus sp. BH72 chromosome, complete genome.
Accession	NC_008702
Length	4,376,040

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The map label for this gene is yxnA [H]

Identifier: 119898030

GI number: 119898030

Start: 1906742

End: 1907686

Strand: Reverse

Name: yxnA [H]

Synonym: azo1739

Alternate gene names: 119898030

Gene position: 1907686-1906742 (Counterclockwise)

Preceding gene: 119898034

Following gene: 119898027

Centisome position: 43.59

GC content: 68.25

Gene sequence:

>945_bases
ATGCGGCTCCATCTCAAACCCGTTTCCGATCAGACGATTGTCGTCACCGGCGCCACCAGCGGCATCGGCCTTGCCACGGT
GCGCATGGCGGTGGCGCAGGGGGCCCGCGTGGTGATGGCGGCGCGCAACGCGCAGGCGCTGGCGACGCTGGCCGAAGGCT
TCCACCACCTGGGCCGCAGCGCCGTGGCAGTGCCGGCGGACGTGGCGAATGTGCAGGACGTGCAGCGCATCCGCGACGCC
GCGCTGGAAGCCTTCGGCGGCTTCGACACCTGGGTGAACAACGCCGGCGTCTCGATCTTCGGCCGCTACGAAGACGTGCC
GCTGCAGGACATGCGGCGGCTGTTCGAAACCAACTTCTGGGGCGTGGTGCATGGTTCGATGATCGCGCTCGAGATCCTGC
GCGAACGCGGCGGCGCGCTGATCAACCTCGGCAGCGAGGTGTCGGACATCGCCTTGCCCCTGCAGGGGATGTACTCGGCC
TCGAAGCACGCGGTGAAAGGCTTCACCGATTCGCTGCGCATGGAGGTGGAAGCCGCGGGCTATCCGGTATCGGTCACGCT
GATCAAGCCGGCCGCCATCGACACCCCCTTCGTGCCGCACGCGGCCAACTACATGGATGTGCAGCCGCGCCTTCCGTCGC
CGCTGTACGCCCCCGAGGTCGTGGCGGACGCCATCCTGTATGCGGCGCATCAGCCCAAGCGCGACATCTACGTGGGCGGC
GCGGCGAAGGCGTTCTCGGCCAGCAACCGGATGATGCCGCGCGTGATGGACAAGGTGAGCGAGCGCTTCATGATCGACCA
GCAGCGCAGCGAGCGCCCGGTGGCCCATCCCACGCAGGCGACGCTGTACCACCCGGGCGGTGGGCTGAGAGAGATGCGCG
GCGATTCGCGCCCGGTGCATCACAGGAGCCTCTACACCCGGCTCACGACGAGTATCGGCCGCTAG

Upstream 100 bases:

>100_bases
AAGCCGCGTTCCTGCGCCGCGGGATCATGGGCACCCCGCTTGCAGGACAAACGGATTGCGGCGGCCCTTCGCCGCGCTCA
GCTCATAGGAGGCGACCGCG

Downstream 100 bases:

>100_bases
AAGAAAAAAGCCCGCGCCGGACGGCGCGGGCTGCAGATGTGTGGAGTACGACCGCCGCGGCGCGGTTAGCTGCCCGCAGT
GTTCCAGTGCGGCGGCGCGG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MRLHLKPVSDQTIVVTGATSGIGLATVRMAVAQGARVVMAARNAQALATLAEGFHHLGRSAVAVPADVANVQDVQRIRDA
ALEAFGGFDTWVNNAGVSIFGRYEDVPLQDMRRLFETNFWGVVHGSMIALEILRERGGALINLGSEVSDIALPLQGMYSA
SKHAVKGFTDSLRMEVEAAGYPVSVTLIKPAAIDTPFVPHAANYMDVQPRLPSPLYAPEVVADAILYAAHQPKRDIYVGG
AAKAFSASNRMMPRVMDKVSERFMIDQQRSERPVAHPTQATLYHPGGGLREMRGDSRPVHHRSLYTRLTTSIGR

Sequences:

>Translated_314_residues
MRLHLKPVSDQTIVVTGATSGIGLATVRMAVAQGARVVMAARNAQALATLAEGFHHLGRSAVAVPADVANVQDVQRIRDA
ALEAFGGFDTWVNNAGVSIFGRYEDVPLQDMRRLFETNFWGVVHGSMIALEILRERGGALINLGSEVSDIALPLQGMYSA
SKHAVKGFTDSLRMEVEAAGYPVSVTLIKPAAIDTPFVPHAANYMDVQPRLPSPLYAPEVVADAILYAAHQPKRDIYVGG
AAKAFSASNRMMPRVMDKVSERFMIDQQRSERPVAHPTQATLYHPGGGLREMRGDSRPVHHRSLYTRLTTSIGR
>Mature_314_residues
MRLHLKPVSDQTIVVTGATSGIGLATVRMAVAQGARVVMAARNAQALATLAEGFHHLGRSAVAVPADVANVQDVQRIRDA
ALEAFGGFDTWVNNAGVSIFGRYEDVPLQDMRRLFETNFWGVVHGSMIALEILRERGGALINLGSEVSDIALPLQGMYSA
SKHAVKGFTDSLRMEVEAAGYPVSVTLIKPAAIDTPFVPHAANYMDVQPRLPSPLYAPEVVADAILYAAHQPKRDIYVGG
AAKAFSASNRMMPRVMDKVSERFMIDQQRSERPVAHPTQATLYHPGGGLREMRGDSRPVHHRSLYTRLTTSIGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=238, Percent_Identity=31.5126050420168, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI4503817, Length=244, Percent_Identity=30.327868852459, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI109715829, Length=236, Percent_Identity=29.6610169491525, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI157739938, Length=204, Percent_Identity=26.9607843137255, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI7706318, Length=200, Percent_Identity=29.5, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI40548397, Length=197, Percent_Identity=28.9340101522843, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI214010158, Length=197, Percent_Identity=28.9340101522843, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI214010156, Length=197, Percent_Identity=28.9340101522843, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI22758144, Length=197, Percent_Identity=28.9340101522843, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI32455239, Length=190, Percent_Identity=28.9473684210526, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI5031765, Length=190, Percent_Identity=28.9473684210526, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI44680136, Length=185, Percent_Identity=27.5675675675676, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI44680133, Length=185, Percent_Identity=27.5675675675676, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI17738292, Length=185, Percent_Identity=27.5675675675676, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=28.7128712871287, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI40254992, Length=225, Percent_Identity=27.5555555555556, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI7705925, Length=224, Percent_Identity=31.25, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4758504, Length=277, Percent_Identity=27.7978339350181, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI7657478, Length=192, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI119392083, Length=204, Percent_Identity=25.9803921568627, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI224922801, Length=175, Percent_Identity=30.8571428571429, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI59889578, Length=180, Percent_Identity=32.2222222222222, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI32483357, Length=194, Percent_Identity=27.319587628866, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1786701, Length=267, Percent_Identity=28.4644194756554, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI2367365, Length=197, Percent_Identity=31.4720812182741, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=28.1914893617021, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082100, Length=197, Percent_Identity=28.9340101522843, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787905, Length=136, Percent_Identity=30.8823529411765, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788459, Length=203, Percent_Identity=27.0935960591133, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=27.8688524590164, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=181, Percent_Identity=30.3867403314917, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17507613, Length=206, Percent_Identity=26.6990291262136, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI32563809, Length=206, Percent_Identity=26.6990291262136, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=262, Percent_Identity=25.1908396946565, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=264, Percent_Identity=25, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17570069, Length=185, Percent_Identity=30.8108108108108, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=254, Percent_Identity=27.1653543307087, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=248, Percent_Identity=26.6129032258064, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17564282, Length=229, Percent_Identity=26.6375545851528, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=187, Percent_Identity=31.0160427807487, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=201, Percent_Identity=31.3432835820896, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=199, Percent_Identity=24.1206030150754, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=240, Percent_Identity=28.75, Blast_Score=84, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007236, Length=229, Percent_Identity=33.6244541484716, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24644339, Length=199, Percent_Identity=31.6582914572864, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI28571387, Length=235, Percent_Identity=28.5106382978723, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI281364494, Length=238, Percent_Identity=29.8319327731092, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21356301, Length=236, Percent_Identity=29.2372881355932, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28571526, Length=242, Percent_Identity=30.9917355371901, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24641232, Length=229, Percent_Identity=30.1310043668122, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=33.695652173913, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21357041, Length=192, Percent_Identity=31.7708333333333, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21358495, Length=239, Percent_Identity=26.7782426778243, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24663911, Length=236, Percent_Identity=27.9661016949153, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24639444, Length=239, Percent_Identity=34.3096234309623, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641388, Length=237, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI116007234, Length=233, Percent_Identity=30.0429184549356, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24580925, Length=207, Percent_Identity=28.0193236714976, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648693, Length=236, Percent_Identity=30.9322033898305, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21355889, Length=236, Percent_Identity=30.9322033898305, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24648944, Length=229, Percent_Identity=25.764192139738, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI23397609, Length=179, Percent_Identity=31.2849162011173, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24651139, Length=194, Percent_Identity=28.8659793814433, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 34107; Mature: 34107

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLHLKPVSDQTIVVTGATSGIGLATVRMAVAQGARVVMAARNAQALATLAEGFHHLGRS
CEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCC
AVAVPADVANVQDVQRIRDAALEAFGGFDTWVNNAGVSIFGRYEDVPLQDMRRLFETNFW
CEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCC
GVVHGSMIALEILRERGGALINLGSEVSDIALPLQGMYSASKHAVKGFTDSLRMEVEAAG
CHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHCHHHHHHHHHHHHHCCCHHHEEEEEECC
YPVSVTLIKPAAIDTPFVPHAANYMDVQPRLPSPLYAPEVVADAILYAAHQPKRDIYVGG
CEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC
AAKAFSASNRMMPRVMDKVSERFMIDQQRSERPVAHPTQATLYHPGGGLREMRGDSRPVH
CHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCEEEECCCCCHHHHCCCCCCCH
HRSLYTRLTTSIGR
HHHHHHHHHHHCCC
>Mature Secondary Structure
MRLHLKPVSDQTIVVTGATSGIGLATVRMAVAQGARVVMAARNAQALATLAEGFHHLGRS
CEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCC
AVAVPADVANVQDVQRIRDAALEAFGGFDTWVNNAGVSIFGRYEDVPLQDMRRLFETNFW
CEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCC
GVVHGSMIALEILRERGGALINLGSEVSDIALPLQGMYSASKHAVKGFTDSLRMEVEAAG
CHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHCHHHHHHHHHHHHHCCCHHHEEEEEECC
YPVSVTLIKPAAIDTPFVPHAANYMDVQPRLPSPLYAPEVVADAILYAAHQPKRDIYVGG
CEEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC
AAKAFSASNRMMPRVMDKVSERFMIDQQRSERPVAHPTQATLYHPGGGLREMRGDSRPVH
CHHHHCCCCCCHHHHHHHHHHHHHHCCHHCCCCCCCCCCEEEECCCCCHHHHCCCCCCCH
HRSLYTRLTTSIGR
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]