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The map label for this gene is glgB1 [H]

Identifier: 119898016

GI number: 119898016

Start: 1889835

End: 1891748

Strand: Direct

Name: glgB1 [H]

Synonym: azo1725

Alternate gene names: 119898016

Gene position: 1889835-1891748 (Clockwise)

Preceding gene: 119898015

Following gene: 119898017

Centisome position: 43.19

GC content: 69.64

Gene sequence:

>1914_bases
ATGGGCGGCGACCGTTCCGACCAGCGTGCCGCGCTGCTCGACGCGCACGACGTCTATCTCTTTCGCGAGGGTTCGCACGC
CCGCCTGTACGACCGCATGGGCTGCGTGCTCGGCGAAGGCGGCGCGCGTTTCGCGGTGTGGGCGCCCAACGCGCGTTCGG
TGCGCGTGGTGGGCAGTTTCGACGGCTGGGGCGAAGGTGCCCCGCTGGTGCTGCGTGCCGACGACTCGGGGCTGTGGGAA
GGCGAGCTGGCCGGGGTGGCGCACGGCGACCTCTACAAGTTCCGCGTCGAGCGCGCCGACGGCAGCCTGATCGACAAGGC
CGACCCCTACGCGGTGTACGCCGAGGCGCCCCCGGCCACCGCGTCGCGGGCATGGCGGCTGGACTACGCCTGGGGCGATG
GCGACTGGATGGCCGCGCGCGGCCGGCTGCAGGCGGCCGACCGCGCGATGAGCATCTACGAGGTGCACCTCGGCTCCTGG
CGGCGGCCGCGCGCCGGCCAGCTGCCCGGCTACCGCGAGATCGCGCCGCTGCTGGCGGAATACGTGCGCGCGATGGGCTT
CACCCACGTCGAATTGCTGCCGGTGGCGGAGCATCCGTTCTACGGCTCCTGGGGTTACCAGAGCACCGGCTATTTCGCCC
CGAGTGCGCGCTACGGCCCGCCGGAAGACTTCATGTTCCTGGTCGATACGCTGCACCAGGCCGGCATCGGCGTGATCCTC
GACTGGGTGCCGTCGCATTTTCCGAGCGATGCCCACGGCCTGGCCGAATTCGACGGCACGCATCTCTACGAGCACGCCGA
TCCGCGCCAGGGCTACCACCCGGAGTGGCATTCCTGCATCTTCAACTACGGCCGTCACGAGGTCTGCGCCTTCCTGCTTT
CCAGCGCGCTGAACTGGCTCGACCGTTACCACATCGACGCGCTGCGGGTGGATGCGGTGGCTTCGATGCTCTATCTCGAC
TACGGCCGTCGCGCCGGCGAGTGGATTCCCAACCGCCACGGCGGCAAGGAGAACCTGGAGGCGGTCGCCTTCCTGCGCCG
GCTCAACGAGGCGGTGTACCGCGACCATCCCGACGTGCACACGATCGCCGAGGAATCGACCGCGTGGCCGATGGTGTCGC
GGCCCACCTACCTGGGCGGGCTCGGCTTCGGCATGAAGTGGAACATGGGCTGGATGCACGACACCCTGGACTACCTCAAG
CACGACCCGATCTACCGCAAGTTCCACCATGGCCGGCTCACGTTCTCGATCTGGTACGCCTTTCAGGAGAACTTCGTGCT
GCCGCTCTCGCACGACGAGGTCGTGTACGGCAAGGGCTCGCTGATCGCCCGCATGCCCGGCGACGACTGGCAGCGCTTTG
CCGGGCTGCGCAGCCTGTTCGGCTACATGTGGGCGCATCCGGGCAAGAAGCTGCTGTTCATGGGCGGCGAATTCGGCCAG
CGCGCCGAATGGACGCACGAGGGCGAACTCGACTGGGCGGCGCTCGACAACCCGTTGCAGGCCGCGCTGCGGCTGTGGGT
GGGCGATCTCAACCGCCTCTACCGCGAACACCCGGCGCTGCACGCGCTCGACTTCGACCCCGCCGGCTTCCGCTGGGTGG
ATAGCGAGAACGCCGACGACAGCGTGCTCGCCTTCCTGCGCCTCGCCGGCGACGGGCGCGCGGTGCTGGTGGTGTGCAAC
TTCACGCCGCTCGTGCGGCACAACTACGTGGTCGGCGTGCCGGCGGGCGGCTTCTGGCGCGAGGCGCTCAACAGCGACGG
CATGGCCTACGGCGGCAGCGGCGTCGGCAACTTCGGCGGCATGGAGGCGGCGCCCGCGCCGGCGCACGGCCTGCCGTGGT
CGCTGGCGCTGACGTTGCCGCCGCTCGGGGTGATGTATTTCGTGCAGGAGTCGGGCGATGGCGGCGGGCATTGA

Upstream 100 bases:

>100_bases
GCACCGCGGCCGAGATCGAGGACGAGCGCCGCGCGCTGCGCGCGGTGCGGGCCGATCTTGCCACCAGCCGCAGCGTGGTC
GGCAGCGGCTACGTGCGCTG

Downstream 100 bases:

>100_bases
ATTACCGGCCGAGGGCCGCGTCCGCGCGGTTGTCGAAGGGGTGACGCCGCAGGTGGATGGCGGCCGCTTCGCGGTGAAGC
GCAGCCTGGGTGAAGACCTG

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 637; Mature: 636

Protein sequence:

>637_residues
MGGDRSDQRAALLDAHDVYLFREGSHARLYDRMGCVLGEGGARFAVWAPNARSVRVVGSFDGWGEGAPLVLRADDSGLWE
GELAGVAHGDLYKFRVERADGSLIDKADPYAVYAEAPPATASRAWRLDYAWGDGDWMAARGRLQAADRAMSIYEVHLGSW
RRPRAGQLPGYREIAPLLAEYVRAMGFTHVELLPVAEHPFYGSWGYQSTGYFAPSARYGPPEDFMFLVDTLHQAGIGVIL
DWVPSHFPSDAHGLAEFDGTHLYEHADPRQGYHPEWHSCIFNYGRHEVCAFLLSSALNWLDRYHIDALRVDAVASMLYLD
YGRRAGEWIPNRHGGKENLEAVAFLRRLNEAVYRDHPDVHTIAEESTAWPMVSRPTYLGGLGFGMKWNMGWMHDTLDYLK
HDPIYRKFHHGRLTFSIWYAFQENFVLPLSHDEVVYGKGSLIARMPGDDWQRFAGLRSLFGYMWAHPGKKLLFMGGEFGQ
RAEWTHEGELDWAALDNPLQAALRLWVGDLNRLYREHPALHALDFDPAGFRWVDSENADDSVLAFLRLAGDGRAVLVVCN
FTPLVRHNYVVGVPAGGFWREALNSDGMAYGGSGVGNFGGMEAAPAPAHGLPWSLALTLPPLGVMYFVQESGDGGGH

Sequences:

>Translated_637_residues
MGGDRSDQRAALLDAHDVYLFREGSHARLYDRMGCVLGEGGARFAVWAPNARSVRVVGSFDGWGEGAPLVLRADDSGLWE
GELAGVAHGDLYKFRVERADGSLIDKADPYAVYAEAPPATASRAWRLDYAWGDGDWMAARGRLQAADRAMSIYEVHLGSW
RRPRAGQLPGYREIAPLLAEYVRAMGFTHVELLPVAEHPFYGSWGYQSTGYFAPSARYGPPEDFMFLVDTLHQAGIGVIL
DWVPSHFPSDAHGLAEFDGTHLYEHADPRQGYHPEWHSCIFNYGRHEVCAFLLSSALNWLDRYHIDALRVDAVASMLYLD
YGRRAGEWIPNRHGGKENLEAVAFLRRLNEAVYRDHPDVHTIAEESTAWPMVSRPTYLGGLGFGMKWNMGWMHDTLDYLK
HDPIYRKFHHGRLTFSIWYAFQENFVLPLSHDEVVYGKGSLIARMPGDDWQRFAGLRSLFGYMWAHPGKKLLFMGGEFGQ
RAEWTHEGELDWAALDNPLQAALRLWVGDLNRLYREHPALHALDFDPAGFRWVDSENADDSVLAFLRLAGDGRAVLVVCN
FTPLVRHNYVVGVPAGGFWREALNSDGMAYGGSGVGNFGGMEAAPAPAHGLPWSLALTLPPLGVMYFVQESGDGGGH
>Mature_636_residues
GGDRSDQRAALLDAHDVYLFREGSHARLYDRMGCVLGEGGARFAVWAPNARSVRVVGSFDGWGEGAPLVLRADDSGLWEG
ELAGVAHGDLYKFRVERADGSLIDKADPYAVYAEAPPATASRAWRLDYAWGDGDWMAARGRLQAADRAMSIYEVHLGSWR
RPRAGQLPGYREIAPLLAEYVRAMGFTHVELLPVAEHPFYGSWGYQSTGYFAPSARYGPPEDFMFLVDTLHQAGIGVILD
WVPSHFPSDAHGLAEFDGTHLYEHADPRQGYHPEWHSCIFNYGRHEVCAFLLSSALNWLDRYHIDALRVDAVASMLYLDY
GRRAGEWIPNRHGGKENLEAVAFLRRLNEAVYRDHPDVHTIAEESTAWPMVSRPTYLGGLGFGMKWNMGWMHDTLDYLKH
DPIYRKFHHGRLTFSIWYAFQENFVLPLSHDEVVYGKGSLIARMPGDDWQRFAGLRSLFGYMWAHPGKKLLFMGGEFGQR
AEWTHEGELDWAALDNPLQAALRLWVGDLNRLYREHPALHALDFDPAGFRWVDSENADDSVLAFLRLAGDGRAVLVVCNF
TPLVRHNYVVGVPAGGFWREALNSDGMAYGGSGVGNFGGMEAAPAPAHGLPWSLALTLPPLGVMYFVQESGDGGGH

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=647, Percent_Identity=28.4389489953632, Blast_Score=178, Evalue=1e-44,
Organism=Escherichia coli, GI1789839, Length=629, Percent_Identity=52.6232114467409, Blast_Score=641, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17554896, Length=589, Percent_Identity=27.6740237691002, Blast_Score=175, Evalue=8e-44,
Organism=Caenorhabditis elegans, GI32564391, Length=575, Percent_Identity=27.4782608695652, Blast_Score=162, Evalue=5e-40,
Organism=Saccharomyces cerevisiae, GI6320826, Length=617, Percent_Identity=27.3905996758509, Blast_Score=174, Evalue=4e-44,
Organism=Drosophila melanogaster, GI28573410, Length=610, Percent_Identity=28.5245901639344, Blast_Score=181, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 71140; Mature: 71008

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGDRSDQRAALLDAHDVYLFREGSHARLYDRMGCVLGEGGARFAVWAPNARSVRVVGSF
CCCCCCCCCEEEEEEEEEEEEECCCCCHHHHHHCCEECCCCCEEEEECCCCCEEEEEECC
DGWGEGAPLVLRADDSGLWEGELAGVAHGDLYKFRVERADGSLIDKADPYAVYAEAPPAT
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCC
ASRAWRLDYAWGDGDWMAARGRLQAADRAMSIYEVHLGSWRRPRAGQLPGYREIAPLLAE
CCCEEEEEEEECCCCEEECCCCHHHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
YVRAMGFTHVELLPVAEHPFYGSWGYQSTGYFAPSARYGPPEDFMFLVDTLHQAGIGVIL
HHHHCCCCEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCEEEE
DWVPSHFPSDAHGLAEFDGTHLYEHADPRQGYHPEWHSCIFNYGRHEVCAFLLSSALNWL
ECHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
DRYHIDALRVDAVASMLYLDYGRRAGEWIPNRHGGKENLEAVAFLRRLNEAVYRDHPDVH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
TIAEESTAWPMVSRPTYLGGLGFGMKWNMGWMHDTLDYLKHDPIYRKFHHGRLTFSIWYA
HHHCCCCCCCCCCCCCEECCCCCCCEECCCCHHHHHHHHHCCCHHHHHHCCEEEEEEEEE
FQENFVLPLSHDEVVYGKGSLIARMPGDDWQRFAGLRSLFGYMWAHPGKKLLFMGGEFGQ
ECCCEEEECCCCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
RAEWTHEGELDWAALDNPLQAALRLWVGDLNRLYREHPALHALDFDPAGFRWVDSENADD
CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEECCCCCCH
SVLAFLRLAGDGRAVLVVCNFTPLVRHNYVVGVPAGGFWREALNSDGMAYGGSGVGNFGG
HHEEEEEECCCCCEEEEEECCCHHHHCCEEEECCCCHHHHHHHCCCCCEECCCCCCCCCC
MEAAPAPAHGLPWSLALTLPPLGVMYFVQESGDGGGH
CCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCC
>Mature Secondary Structure 
GGDRSDQRAALLDAHDVYLFREGSHARLYDRMGCVLGEGGARFAVWAPNARSVRVVGSF
CCCCCCCCEEEEEEEEEEEEECCCCCHHHHHHCCEECCCCCEEEEECCCCCEEEEEECC
DGWGEGAPLVLRADDSGLWEGELAGVAHGDLYKFRVERADGSLIDKADPYAVYAEAPPAT
CCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCC
ASRAWRLDYAWGDGDWMAARGRLQAADRAMSIYEVHLGSWRRPRAGQLPGYREIAPLLAE
CCCEEEEEEEECCCCEEECCCCHHHHHHHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHH
YVRAMGFTHVELLPVAEHPFYGSWGYQSTGYFAPSARYGPPEDFMFLVDTLHQAGIGVIL
HHHHCCCCEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCEEEE
DWVPSHFPSDAHGLAEFDGTHLYEHADPRQGYHPEWHSCIFNYGRHEVCAFLLSSALNWL
ECHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH
DRYHIDALRVDAVASMLYLDYGRRAGEWIPNRHGGKENLEAVAFLRRLNEAVYRDHPDVH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
TIAEESTAWPMVSRPTYLGGLGFGMKWNMGWMHDTLDYLKHDPIYRKFHHGRLTFSIWYA
HHHCCCCCCCCCCCCCEECCCCCCCEECCCCHHHHHHHHHCCCHHHHHHCCEEEEEEEEE
FQENFVLPLSHDEVVYGKGSLIARMPGDDWQRFAGLRSLFGYMWAHPGKKLLFMGGEFGQ
ECCCEEEECCCCCEEECCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
RAEWTHEGELDWAALDNPLQAALRLWVGDLNRLYREHPALHALDFDPAGFRWVDSENADD
CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEECCCCCCH
SVLAFLRLAGDGRAVLVVCNFTPLVRHNYVVGVPAGGFWREALNSDGMAYGGSGVGNFGG
HHEEEEEECCCCCEEEEEECCCHHHHCCEEEECCCCHHHHHHHCCCCCEECCCCCCCCCC
MEAAPAPAHGLPWSLALTLPPLGVMYFVQESGDGGGH
CCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA