| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is comA [H]
Identifier: 119897803
GI number: 119897803
Start: 1654821
End: 1657130
Strand: Direct
Name: comA [H]
Synonym: azo1512
Alternate gene names: 119897803
Gene position: 1654821-1657130 (Clockwise)
Preceding gene: 119897801
Following gene: 119897804
Centisome position: 37.82
GC content: 72.47
Gene sequence:
>2310_bases ATGTTTGCGCTCGGAACCGCGGCGCTGCAGCTTCAACCCGAACTGCCGACGGCCGTCACAGTGGTTTGGGTGGCCGTGGC GCTTGCCGCCGCGGTGGGCCTGGCGGCAGTGCTGCGCGGCAGAGGGCGCGCCGCCCGCCTGAGCCTGATGGCGGCCGCCG CACTCGCCGGCTTCATCGGCGCCGCGCTGCGCGCCGACGACCGCCTGGCGGACGCCTTGCCGATGGCGTGGGAAGGGCGG GACGTGCCGGTGGTGGGGGTGATCGACGACCTGCCACAGGCCTTTGGCGAAGGGGTACGTTTCACGCTCGCGGTCGAGTC CGCCGAGGGGCCGGTGCCGTCGCGGGTGCAGGTGTCGTGGTATCGCGGGCGCGACGACGACAGCCCGCTGCCGCGGCTTC TCCCGGGCGAACGCTGGGCATTCGCACTGCGGCTGAAGCGGCCGCACGGATTCGTGAATCCGGCGGGATTCGATTACGAA GCCTGGCTGCTGGAGCGCGGCGTGCGCGCGACCGGCTACGTGCGGGCGCAGCCCGCGCCACGCCGCCTGCACGAAGACGC CGGCGGGTGGATGACCAGGGTGCATCGCGTGCGTGCCGCGGTTCGCGACCGCTTTCTCGCGGCGCTGGGAGAGGCGCCCT ACGCCGGCATCCTGGTTGCGCTTGCGGTGGGCGACCAGCGCGCAATTCCGGCCGAGCAGTGGGAGGTCTTCCGGCGCACC GGTATCGCCCACCTGGTGTCGATTTCCGGCATGCACATCTCCTTGATCGCGCTGCTCGCCGGCGGCCTCGTCAATCTGTT GTGGCGCCGTGTGCCGACGCTGGTGCTGCGCTTGCCGGCACGCAAGGCGGGCGTGCTCGCCGGCCTTGCGGCGGCCCTGG GCTATGGTCTGCTTGCGGGCATGGGCATCCCTGTGCAGCGCGCGGCGATCATGCTCAGCATGGCCGCCATCGCGCTGATG CTCGGGCGCGAGGTGGCGCCCAGCCGGGTACTTGCGCTCGCGGTGCTGGGCGTGCTGCTGGTCGACCCGTGGGCGGTGCT GGCTGCCGGGTTCTGGCTATCGTTCGGGGCGGTCGGGGCGATCCTCGTGCTTGCCGGCGGGCGGATCGGTCCGGCGGCGC GCTGGAGCGCGGCGGTGCGCCTCCAGCTTGGCATCACGCTGGCCACCGTACCGCTGCTGGTGGCACTGTTCCATTCGTTT CCGCTGGTTTCCCCGCTGGCCAATGCGGTGGCGATTCCGCTCGTCAGTTTCGTCGTCACGCCCCTGGCCCTGCTGGCGAT GGTCCTGCCGTGGGACCTGCTGCTGGAGGCCGCGCATTGGGTGACGGCCCGCGTGATGGACTGGTCGGTGCTGCTCGCCG ATCTTCCCTTCGCGCTGTGGCGTCAGGCGGCCGCGCCGGGCTGGGCGCTCGCGGCGGGCGCGGTGGGCGCCTGGATGTGG CTGTTGCCGCGCCCGCTGCCGGGGCGTGCCGGCGCGCTGCTGATGGTGGGGCTGCTGCTCGGATGGCAGCCGCCGCGCCC CGCGCCCGGCAGCTTTCGCGCGACGGTGCTCGACGTCGGCAACGGTCTGGCAGTGCATGTGCAGACGGCTACCCACGATC TGCTTTACGACGCCGGGCCGCCCTATGGTCCCTTGTCGGACGCCGGCGAGCGCGTCGTGCTGCCGTATCTGGCAGCGAAT GGCGTGGCGCGGCTCGATGTGCTGGTGCTGTCGCACGACGACGCGGATCATTCCGGTGGCGCCGGCAGCGTGCTGGAGTC GATCGCGGTGGACGAGGTCCTGGCGGGCGAGGGCGCCGGTTTTGTGCCGGCCGCCGGGGTGCCGGCGCGGGCCTGCGCTG CCGGCGAACAGTGGGCCTGGGACGACGTGGGTTTCCAGGTTCTCCATCCCGTCGCGGGGCGCGGACCGGCGCGGCGCAAC AACGACGACTCCTGCGTGCTGCGGATCGCCGCCGGAGGCGGCTCGCTGCTGTTGGTGGGTGACATCGAGCAGCGCGCCGA GGCGGGGCTGGTCAGGGGTGATGCCGCCGTGCTTGCCAGCTCGGTCATCGTCGTCGCCCACCACGGCAGCCGCAGTTCGT CGTCTCCCGCCTTCGTCGACGCCGTGCTGCCGGAGGCCGCGGTGTTCTCGGTCGGCTACCGCAACATGTTCGGCCACCCC CACCCGATGGTGTGGGCACGCTGGGCCGAGGCGGGCGCCCGCAACTGGCGCACCGACAGCCAGGGTGCCATCGCCATCGA GGTCGACGGATCGGGCGTCACCGTGAACGCCGCGCGCGAATCCGCCCCGCGCTACTGGCATGGACGCTAG
Upstream 100 bases:
>100_bases ATGGATTTGCCCCGATTCTAGCCCAGCGCGGGCGCCGCCCACGCTTGCCTCGTTGTTCATTCCGTTGGCATGATCGCGGA TTATGCGAATGTCAATTTTC
Downstream 100 bases:
>100_bases CCGAAGGTCATGCCGCGAACGCGGTGCTAGACTCGCAACCGTCATCGACCCGTCCGCCGCGAGCCGCCATGAGCCTGCTG TCCGCACTGCGCCGCCTGTT
Product: putative DNA uptake/competence protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MFALGTAALQLQPELPTAVTVVWVAVALAAAVGLAAVLRGRGRAARLSLMAAAALAGFIGAALRADDRLADALPMAWEGR DVPVVGVIDDLPQAFGEGVRFTLAVESAEGPVPSRVQVSWYRGRDDDSPLPRLLPGERWAFALRLKRPHGFVNPAGFDYE AWLLERGVRATGYVRAQPAPRRLHEDAGGWMTRVHRVRAAVRDRFLAALGEAPYAGILVALAVGDQRAIPAEQWEVFRRT GIAHLVSISGMHISLIALLAGGLVNLLWRRVPTLVLRLPARKAGVLAGLAAALGYGLLAGMGIPVQRAAIMLSMAAIALM LGREVAPSRVLALAVLGVLLVDPWAVLAAGFWLSFGAVGAILVLAGGRIGPAARWSAAVRLQLGITLATVPLLVALFHSF PLVSPLANAVAIPLVSFVVTPLALLAMVLPWDLLLEAAHWVTARVMDWSVLLADLPFALWRQAAAPGWALAAGAVGAWMW LLPRPLPGRAGALLMVGLLLGWQPPRPAPGSFRATVLDVGNGLAVHVQTATHDLLYDAGPPYGPLSDAGERVVLPYLAAN GVARLDVLVLSHDDADHSGGAGSVLESIAVDEVLAGEGAGFVPAAGVPARACAAGEQWAWDDVGFQVLHPVAGRGPARRN NDDSCVLRIAAGGGSLLLVGDIEQRAEAGLVRGDAAVLASSVIVVAHHGSRSSSSPAFVDAVLPEAAVFSVGYRNMFGHP HPMVWARWAEAGARNWRTDSQGAIAIEVDGSGVTVNAARESAPRYWHGR
Sequences:
>Translated_769_residues MFALGTAALQLQPELPTAVTVVWVAVALAAAVGLAAVLRGRGRAARLSLMAAAALAGFIGAALRADDRLADALPMAWEGR DVPVVGVIDDLPQAFGEGVRFTLAVESAEGPVPSRVQVSWYRGRDDDSPLPRLLPGERWAFALRLKRPHGFVNPAGFDYE AWLLERGVRATGYVRAQPAPRRLHEDAGGWMTRVHRVRAAVRDRFLAALGEAPYAGILVALAVGDQRAIPAEQWEVFRRT GIAHLVSISGMHISLIALLAGGLVNLLWRRVPTLVLRLPARKAGVLAGLAAALGYGLLAGMGIPVQRAAIMLSMAAIALM LGREVAPSRVLALAVLGVLLVDPWAVLAAGFWLSFGAVGAILVLAGGRIGPAARWSAAVRLQLGITLATVPLLVALFHSF PLVSPLANAVAIPLVSFVVTPLALLAMVLPWDLLLEAAHWVTARVMDWSVLLADLPFALWRQAAAPGWALAAGAVGAWMW LLPRPLPGRAGALLMVGLLLGWQPPRPAPGSFRATVLDVGNGLAVHVQTATHDLLYDAGPPYGPLSDAGERVVLPYLAAN GVARLDVLVLSHDDADHSGGAGSVLESIAVDEVLAGEGAGFVPAAGVPARACAAGEQWAWDDVGFQVLHPVAGRGPARRN NDDSCVLRIAAGGGSLLLVGDIEQRAEAGLVRGDAAVLASSVIVVAHHGSRSSSSPAFVDAVLPEAAVFSVGYRNMFGHP HPMVWARWAEAGARNWRTDSQGAIAIEVDGSGVTVNAARESAPRYWHGR >Mature_769_residues MFALGTAALQLQPELPTAVTVVWVAVALAAAVGLAAVLRGRGRAARLSLMAAAALAGFIGAALRADDRLADALPMAWEGR DVPVVGVIDDLPQAFGEGVRFTLAVESAEGPVPSRVQVSWYRGRDDDSPLPRLLPGERWAFALRLKRPHGFVNPAGFDYE AWLLERGVRATGYVRAQPAPRRLHEDAGGWMTRVHRVRAAVRDRFLAALGEAPYAGILVALAVGDQRAIPAEQWEVFRRT GIAHLVSISGMHISLIALLAGGLVNLLWRRVPTLVLRLPARKAGVLAGLAAALGYGLLAGMGIPVQRAAIMLSMAAIALM LGREVAPSRVLALAVLGVLLVDPWAVLAAGFWLSFGAVGAILVLAGGRIGPAARWSAAVRLQLGITLATVPLLVALFHSF PLVSPLANAVAIPLVSFVVTPLALLAMVLPWDLLLEAAHWVTARVMDWSVLLADLPFALWRQAAAPGWALAAGAVGAWMW LLPRPLPGRAGALLMVGLLLGWQPPRPAPGSFRATVLDVGNGLAVHVQTATHDLLYDAGPPYGPLSDAGERVVLPYLAAN GVARLDVLVLSHDDADHSGGAGSVLESIAVDEVLAGEGAGFVPAAGVPARACAAGEQWAWDDVGFQVLHPVAGRGPARRN NDDSCVLRIAAGGGSLLLVGDIEQRAEAGLVRGDAAVLASSVIVVAHHGSRSSSSPAFVDAVLPEAAVFSVGYRNMFGHP HPMVWARWAEAGARNWRTDSQGAIAIEVDGSGVTVNAARESAPRYWHGR
Specific function: Essential for natural transformation. Could be a transporter involved in DNA uptake [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To B.subtilis ComEC, H.influenzae REC2, and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=665, Percent_Identity=29.6240601503759, Blast_Score=228, Evalue=1e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 80658; Mature: 80658
Theoretical pI: Translated: 9.01; Mature: 9.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFALGTAALQLQPELPTAVTVVWVAVALAAAVGLAAVLRGRGRAARLSLMAAAALAGFIG CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH AALRADDRLADALPMAWEGRDVPVVGVIDDLPQAFGEGVRFTLAVESAEGPVPSRVQVSW HHHHCCHHHHHHCCCCCCCCCCCEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEE YRGRDDDSPLPRLLPGERWAFALRLKRPHGFVNPAGFDYEAWLLERGVRATGYVRAQPAP ECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCH RRLHEDAGGWMTRVHRVRAAVRDRFLAALGEAPYAGILVALAVGDQRAIPAEQWEVFRRT HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCCHHHHHHHHHH GIAHLVSISGMHISLIALLAGGLVNLLWRRVPTLVLRLPARKAGVLAGLAAALGYGLLAG CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC MGIPVQRAAIMLSMAAIALMLGREVAPSRVLALAVLGVLLVDPWAVLAAGFWLSFGAVGA CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ILVLAGGRIGPAARWSAAVRLQLGITLATVPLLVALFHSFPLVSPLANAVAIPLVSFVVT HHHHCCCCCCCCHHHCEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH PLALLAMVLPWDLLLEAAHWVTARVMDWSVLLADLPFALWRQAAAPGWALAAGAVGAWMW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHH LLPRPLPGRAGALLMVGLLLGWQPPRPAPGSFRATVLDVGNGLAVHVQTATHDLLYDAGP HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEECCHHHHCCCCC PYGPLSDAGERVVLPYLAANGVARLDVLVLSHDDADHSGGAGSVLESIAVDEVLAGEGAG CCCCCCCCCCEEEEEEHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC FVPAAGVPARACAAGEQWAWDDVGFQVLHPVAGRGPARRNNDDSCVLRIAAGGGSLLLVG CCCCCCCCHHHHCCCCCCCCHHCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEE DIEQRAEAGLVRGDAAVLASSVIVVAHHGSRSSSSPAFVDAVLPEAAVFSVGYRNMFGHP CHHHHHHCCCCCCCHHHHHCCEEEEEECCCCCCCCCCHHHHHCCHHHHHHCCHHHHCCCC HPMVWARWAEAGARNWRTDSQGAIAIEVDGSGVTVNAARESAPRYWHGR CCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECHHCCCCCCCCCC >Mature Secondary Structure MFALGTAALQLQPELPTAVTVVWVAVALAAAVGLAAVLRGRGRAARLSLMAAAALAGFIG CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH AALRADDRLADALPMAWEGRDVPVVGVIDDLPQAFGEGVRFTLAVESAEGPVPSRVQVSW HHHHCCHHHHHHCCCCCCCCCCCEEEHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEEEE YRGRDDDSPLPRLLPGERWAFALRLKRPHGFVNPAGFDYEAWLLERGVRATGYVRAQPAP ECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEECCCCH RRLHEDAGGWMTRVHRVRAAVRDRFLAALGEAPYAGILVALAVGDQRAIPAEQWEVFRRT HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCCHHHHHHHHHH GIAHLVSISGMHISLIALLAGGLVNLLWRRVPTLVLRLPARKAGVLAGLAAALGYGLLAG CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC MGIPVQRAAIMLSMAAIALMLGREVAPSRVLALAVLGVLLVDPWAVLAAGFWLSFGAVGA CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ILVLAGGRIGPAARWSAAVRLQLGITLATVPLLVALFHSFPLVSPLANAVAIPLVSFVVT HHHHCCCCCCCCHHHCEEEEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH PLALLAMVLPWDLLLEAAHWVTARVMDWSVLLADLPFALWRQAAAPGWALAAGAVGAWMW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHH LLPRPLPGRAGALLMVGLLLGWQPPRPAPGSFRATVLDVGNGLAVHVQTATHDLLYDAGP HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEECCHHHHCCCCC PYGPLSDAGERVVLPYLAANGVARLDVLVLSHDDADHSGGAGSVLESIAVDEVLAGEGAG CCCCCCCCCCEEEEEEHHCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCC FVPAAGVPARACAAGEQWAWDDVGFQVLHPVAGRGPARRNNDDSCVLRIAAGGGSLLLVG CCCCCCCCHHHHCCCCCCCCHHCCHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEE DIEQRAEAGLVRGDAAVLASSVIVVAHHGSRSSSSPAFVDAVLPEAAVFSVGYRNMFGHP CHHHHHHCCCCCCCHHHHHCCEEEEEECCCCCCCCCCHHHHHCCHHHHHHCCHHHHCCCC HPMVWARWAEAGARNWRTDSQGAIAIEVDGSGVTVNAARESAPRYWHGR CCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7934834; 8830266 [H]