| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is xseA [H]
Identifier: 119897758
GI number: 119897758
Start: 1599814
End: 1601193
Strand: Reverse
Name: xseA [H]
Synonym: azo1467
Alternate gene names: 119897758
Gene position: 1601193-1599814 (Counterclockwise)
Preceding gene: 119897767
Following gene: 119897757
Centisome position: 36.59
GC content: 70.87
Gene sequence:
>1380_bases ATGAAATTCGCCTCCCAGTCGCCTGAAGCATCACCGCTATCCCTGTCCGCTCAAGTGCTTACGGTGTCCGCGCTGAACCG CCTCGCGCGCGAGGTACTCGAGTCGGCCATCCCCCTGTTGTGGGTCAGCGGCGAGATCTCCAACCTCACCCGTGCCGCCT CCGGACATCTGTATTTCACCCTCAAGGACGAGCAGGCCCAGGTGCGGTGCGCGATGTGGCGCAACCGTGCCCAGTTGCTG CCCTTCCGGCCTGAAAACGGCATGCGGGTCGAAGCCCGCGCCCTGGTGACTGTCTATGAAGTCCGGGGCGACTATCAGCT GGGCGTGGAGGCGCTGCGCCCGGCGGGCATCGGCAACCTGTTCGAAGCCTTCACGCGCCTGAAGGAAAAGCTCGCCGCCG AAGGCCTGTTCGATACCGCGGTCAAGCGTCCCTTGCCGCCGTATCCGCGCGGCATCGGTATCGTCACCTCGCCCGCCGCG GCAGCCCTGCGCGACGTGCTGGTCACACTGAAGCGCCGTGCGCCGCAACTGCCGGTGGTGCTGTATCCCGCCCCGGTGCA GGGTGCGGATGCGCCGCTGCGGCTGGTGGCGGCGCTGGAAGCCGCCGCGGCGCGCGCTGCGGAAGACGGCATCGACCTCG TCCTGCTGGTGCGCGGAGGCGGCAGCATCGAAGACCTGCAGGCCTTCAACGACGAAGGACTGGCGCGCGCCATCCGGCGC AGTCCGTTGCCGGTGGTGTGCGGCGTGGGGCACGAAACCGACTTCACCATCGCCGACTTCGCCGCCGACCTCCGCGCCCC GACGCCGACCGGCGCGGCCGAACTTGCGAGCGCGGGTTTTCATGCCGCGCGCGACCGCGTCCTCGCGCTCGACCAACACC TTGCCCGCGCCATGCAGCGCCGGCTCGACACGCTCGCCCAGCTCCTCGACCGTGCCGCGCTGCGACTGGTGCATCCGCGC CAGCGGCTGGCAGCCGCCAGGGTTCAACTCGCAACGCTGGAGCGCCGGCTGCACGATGCCGGAACGCGGCAGCTGCAGCG GACAGACGAACGCCTCGCGCGCCTCGGCCTGCGCCTGCGCGGGCGCCGGCCCGATCTGGCGCGCGCGCGCGCCGACCAGC ACCAGCTCGCCGCGCGCCTGCGTCGCGGCCTCGATACCGTCATGCAGCGGCACCGCCTGCGGCTGGAGGCACTACAGGAC CACCTCAAGCATCTCGCGCCGGATGCCGTGCTCGCGCGCGGCTACAGCATCACCCGCGACGCCCACGGCCACATCCTGCG TTCCGTTCAGGACATCGGCGTGGGCGACGCGGTGAGCGTGCAACTGGCCGATGGCCGTCTCGACGCGGAAGTCACCGCCA CGCAGCCGCCCCGGCCCTGA
Upstream 100 bases:
>100_bases AGTTATCAACTACTTGACAAACACTCCCAGTCGGATCAAGGACTTGCCGATTCAGGCTTGACAGTCCGGCGGGGCTGTGG ATTCCGCTACAATCCCGGGC
Downstream 100 bases:
>100_bases TGCCGGGGCACTTCCGGCATATGCATTTGCTGTTGCCGCGGTTTCCCAAACGCCGCGTTCGGCTTAAGATCAACGGCTGT CGGGATTGGCGACCCTGAGC
Product: exodeoxyribonuclease VII
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MKFASQSPEASPLSLSAQVLTVSALNRLAREVLESAIPLLWVSGEISNLTRAASGHLYFTLKDEQAQVRCAMWRNRAQLL PFRPENGMRVEARALVTVYEVRGDYQLGVEALRPAGIGNLFEAFTRLKEKLAAEGLFDTAVKRPLPPYPRGIGIVTSPAA AALRDVLVTLKRRAPQLPVVLYPAPVQGADAPLRLVAALEAAAARAAEDGIDLVLLVRGGGSIEDLQAFNDEGLARAIRR SPLPVVCGVGHETDFTIADFAADLRAPTPTGAAELASAGFHAARDRVLALDQHLARAMQRRLDTLAQLLDRAALRLVHPR QRLAAARVQLATLERRLHDAGTRQLQRTDERLARLGLRLRGRRPDLARARADQHQLAARLRRGLDTVMQRHRLRLEALQD HLKHLAPDAVLARGYSITRDAHGHILRSVQDIGVGDAVSVQLADGRLDAEVTATQPPRP
Sequences:
>Translated_459_residues MKFASQSPEASPLSLSAQVLTVSALNRLAREVLESAIPLLWVSGEISNLTRAASGHLYFTLKDEQAQVRCAMWRNRAQLL PFRPENGMRVEARALVTVYEVRGDYQLGVEALRPAGIGNLFEAFTRLKEKLAAEGLFDTAVKRPLPPYPRGIGIVTSPAA AALRDVLVTLKRRAPQLPVVLYPAPVQGADAPLRLVAALEAAAARAAEDGIDLVLLVRGGGSIEDLQAFNDEGLARAIRR SPLPVVCGVGHETDFTIADFAADLRAPTPTGAAELASAGFHAARDRVLALDQHLARAMQRRLDTLAQLLDRAALRLVHPR QRLAAARVQLATLERRLHDAGTRQLQRTDERLARLGLRLRGRRPDLARARADQHQLAARLRRGLDTVMQRHRLRLEALQD HLKHLAPDAVLARGYSITRDAHGHILRSVQDIGVGDAVSVQLADGRLDAEVTATQPPRP >Mature_459_residues MKFASQSPEASPLSLSAQVLTVSALNRLAREVLESAIPLLWVSGEISNLTRAASGHLYFTLKDEQAQVRCAMWRNRAQLL PFRPENGMRVEARALVTVYEVRGDYQLGVEALRPAGIGNLFEAFTRLKEKLAAEGLFDTAVKRPLPPYPRGIGIVTSPAA AALRDVLVTLKRRAPQLPVVLYPAPVQGADAPLRLVAALEAAAARAAEDGIDLVLLVRGGGSIEDLQAFNDEGLARAIRR SPLPVVCGVGHETDFTIADFAADLRAPTPTGAAELASAGFHAARDRVLALDQHLARAMQRRLDTLAQLLDRAALRLVHPR QRLAAARVQLATLERRLHDAGTRQLQRTDERLARLGLRLRGRRPDLARARADQHQLAARLRRGLDTVMQRHRLRLEALQD HLKHLAPDAVLARGYSITRDAHGHILRSVQDIGVGDAVSVQLADGRLDAEVTATQPPRP
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=453, Percent_Identity=45.2538631346578, Blast_Score=352, Evalue=3e-98,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 50110; Mature: 50110
Theoretical pI: Translated: 10.96; Mature: 10.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFASQSPEASPLSLSAQVLTVSALNRLAREVLESAIPLLWVSGEISNLTRAASGHLYFT CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCEEEE LKDEQAQVRCAMWRNRAQLLPFRPENGMRVEARALVTVYEVRGDYQLGVEALRPAGIGNL EECCCHHHHHHHHHCCCCCCCCCCCCCCEEEHHHEEEEEEECCCHHHHHHHHCCCCCHHH FEAFTRLKEKLAAEGLFDTAVKRPLPPYPRGIGIVTSPAAAALRDVLVTLKRRAPQLPVV HHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCEE LYPAPVQGADAPLRLVAALEAAAARAAEDGIDLVLLVRGGGSIEDLQAFNDEGLARAIRR EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCHHHHHHHHHC SPLPVVCGVGHETDFTIADFAADLRAPTPTGAAELASAGFHAARDRVLALDQHLARAMQR CCCCEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH RLDTLAQLLDRAALRLVHPRQRLAAARVQLATLERRLHDAGTRQLQRTDERLARLGLRLR HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GRRPDLARARADQHQLAARLRRGLDTVMQRHRLRLEALQDHLKHLAPDAVLARGYSITRD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC AHGHILRSVQDIGVGDAVSVQLADGRLDAEVTATQPPRP HHHHHHHHHHHCCCCCEEEEEEECCCCCCEEECCCCCCC >Mature Secondary Structure MKFASQSPEASPLSLSAQVLTVSALNRLAREVLESAIPLLWVSGEISNLTRAASGHLYFT CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCEEEE LKDEQAQVRCAMWRNRAQLLPFRPENGMRVEARALVTVYEVRGDYQLGVEALRPAGIGNL EECCCHHHHHHHHHCCCCCCCCCCCCCCEEEHHHEEEEEEECCCHHHHHHHHCCCCCHHH FEAFTRLKEKLAAEGLFDTAVKRPLPPYPRGIGIVTSPAAAALRDVLVTLKRRAPQLPVV HHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCCCEE LYPAPVQGADAPLRLVAALEAAAARAAEDGIDLVLLVRGGGSIEDLQAFNDEGLARAIRR EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHCHHHHHHHHHC SPLPVVCGVGHETDFTIADFAADLRAPTPTGAAELASAGFHAARDRVLALDQHLARAMQR CCCCEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHH RLDTLAQLLDRAALRLVHPRQRLAAARVQLATLERRLHDAGTRQLQRTDERLARLGLRLR HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GRRPDLARARADQHQLAARLRRGLDTVMQRHRLRLEALQDHLKHLAPDAVLARGYSITRD CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCC AHGHILRSVQDIGVGDAVSVQLADGRLDAEVTATQPPRP HHHHHHHHHHHCCCCCEEEEEEECCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA