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The map label for this gene is sodB [H]

Identifier: 119897757

GI number: 119897757

Start: 1599073

End: 1599657

Strand: Reverse

Name: sodB [H]

Synonym: azo1466

Alternate gene names: 119897757

Gene position: 1599657-1599073 (Counterclockwise)

Preceding gene: 119897758

Following gene: 119897756

Centisome position: 36.55

GC content: 62.22

Gene sequence:

>585_bases
ATGGAACACACGCTGCCCCCCCTGCCCTACGCCAAGAACGCCCTGGCGCCGGCCATCTCCGAAGAAACGCTGGAATTCCA
CTACGGCAAGCACCACCAGGCCTACGTCACCAACCTCAACAACCTGATCAAGGGCACCGAGTACGAGAACCTCGACCTCG
AAGCCATCATCAAGAAGGCCCCGGCCGGCGGCGTGTACAACAACTCGGCGCAGGTCTGGAACCACACCTTCTTCTGGAAC
AGCATGAAGCCGAACGGCGGTGGCGAACCGACCGGCGCGCTGGCTGACGCGATCAAGGCCAAGTGGGGCTCGTTCGACGA
CTTCAAGAAGGCTTTCCAGACCTCCGCCGTGGGCAACTTCGGCTCCGGCTGGACCTGGCTGGTGAAGAAGGCCGACGGCT
CGGTGGACATCGTCAACATGGGCGCTGCCGGCACCCCGCTGACCACCGGCGACAAGGCTCTGCTCTGTATCGATGTGTGG
GAACACGCCTACTACATCGACTACCGCAACCTGCGTCCGAAGTTCGTCGAGACCTTCCTCGAGAAGCTCGCCAACTGGGA
TTTCGCGGCGCAGAACTTCGCCTGA

Upstream 100 bases:

>100_bases
GTTCGGCTTAAGATCAACGGCTGTCGGGATTGGCGACCCTGAGCAATCCTGACTAGAATTGTCGGACTTTACCCCCAACG
GACACAGACAGGAGAATTCG

Downstream 100 bases:

>100_bases
TCCCGCCTGCCTCGCGGGTGCACGCACCCGCGGCAGCAAAAGCGACCCGACCGGGTCGCTTTTTCTTTTTCCACTCCCGC
CCGTGCTCGAGATCCTTTAT

Product: putative superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MEHTLPPLPYAKNALAPAISEETLEFHYGKHHQAYVTNLNNLIKGTEYENLDLEAIIKKAPAGGVYNNSAQVWNHTFFWN
SMKPNGGGEPTGALADAIKAKWGSFDDFKKAFQTSAVGNFGSGWTWLVKKADGSVDIVNMGAAGTPLTTGDKALLCIDVW
EHAYYIDYRNLRPKFVETFLEKLANWDFAAQNFA

Sequences:

>Translated_194_residues
MEHTLPPLPYAKNALAPAISEETLEFHYGKHHQAYVTNLNNLIKGTEYENLDLEAIIKKAPAGGVYNNSAQVWNHTFFWN
SMKPNGGGEPTGALADAIKAKWGSFDDFKKAFQTSAVGNFGSGWTWLVKKADGSVDIVNMGAAGTPLTTGDKALLCIDVW
EHAYYIDYRNLRPKFVETFLEKLANWDFAAQNFA
>Mature_194_residues
MEHTLPPLPYAKNALAPAISEETLEFHYGKHHQAYVTNLNNLIKGTEYENLDLEAIIKKAPAGGVYNNSAQVWNHTFFWN
SMKPNGGGEPTGALADAIKAKWGSFDDFKKAFQTSAVGNFGSGWTWLVKKADGSVDIVNMGAAGTPLTTGDKALLCIDVW
EHAYYIDYRNLRPKFVETFLEKLANWDFAAQNFA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=41.2060301507538, Blast_Score=140, Evalue=8e-34,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=41.2060301507538, Blast_Score=140, Evalue=8e-34,
Organism=Homo sapiens, GI67782309, Length=195, Percent_Identity=34.8717948717949, Blast_Score=100, Evalue=6e-22,
Organism=Escherichia coli, GI1787946, Length=194, Percent_Identity=63.9175257731959, Blast_Score=257, Evalue=4e-70,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=39.6135265700483, Blast_Score=137, Evalue=6e-34,
Organism=Caenorhabditis elegans, GI17506561, Length=203, Percent_Identity=38.9162561576355, Blast_Score=133, Evalue=6e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=201, Percent_Identity=36.318407960199, Blast_Score=123, Evalue=7e-29,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=35.2657004830918, Blast_Score=104, Evalue=8e-24,
Organism=Drosophila melanogaster, GI17136812, Length=197, Percent_Identity=41.1167512690355, Blast_Score=135, Evalue=1e-32,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21519; Mature: 21519

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHTLPPLPYAKNALAPAISEETLEFHYGKHHQAYVTNLNNLIKGTEYENLDLEAIIKKA
CCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHC
PAGGVYNNSAQVWNHTFFWNSMKPNGGGEPTGALADAIKAKWGSFDDFKKAFQTSAVGNF
CCCCEECCCHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
GSGWTWLVKKADGSVDIVNMGAAGTPLTTGDKALLCIDVWEHAYYIDYRNLRPKFVETFL
CCCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHH
EKLANWDFAAQNFA
HHHCCCCCCCCCCC
>Mature Secondary Structure
MEHTLPPLPYAKNALAPAISEETLEFHYGKHHQAYVTNLNNLIKGTEYENLDLEAIIKKA
CCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHC
PAGGVYNNSAQVWNHTFFWNSMKPNGGGEPTGALADAIKAKWGSFDDFKKAFQTSAVGNF
CCCCEECCCHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
GSGWTWLVKKADGSVDIVNMGAAGTPLTTGDKALLCIDVWEHAYYIDYRNLRPKFVETFL
CCCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCHHHHHHHH
EKLANWDFAAQNFA
HHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8181762; 12910271 [H]