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The map label for this gene is rnfD2 [H]

Identifier: 119897729

GI number: 119897729

Start: 1567520

End: 1568527

Strand: Reverse

Name: rnfD2 [H]

Synonym: azo1438

Alternate gene names: 119897729

Gene position: 1568527-1567520 (Counterclockwise)

Preceding gene: 119897730

Following gene: 119897728

Centisome position: 35.84

GC content: 69.64

Gene sequence:

>1008_bases
ATGATGCATTCTCCCTACATCCGCCGGCCGGCCAGCGTCCAGCGCGTGATGCTCACCGTGCTTGCGGCCCTGCTGCCGGG
CATCGCGCTGTACGTGTGGCAGATCGGCCCCGGCATCCTGGTAAATCTCGCGATCGCCAGCGCCGCCGCACTCGCGGGCG
AGGCCGCCATCCTGGCGCTGCGGCGCAAGCCCGCCGCGGCCGCGCTCAGCGACGGCTCGGCGCTGGTCACCGCGTGGCTG
GTGGCGCTGTGTTTTCCGCCCATCGTGCCGTGGTGGCTGACCACGCTGGCGGTCCTGATCGCGGTGATGGGCGCCAAGCA
TCTGTACGGCGGCCTTGGGCAGAACCCGTTCAATCCGGCCATGGCCGCCTACTGCACGATGATCGTCGCCTACCCGGCGC
TGATGTCGCAATGGCCGGCGGCGGGCCAGCTCGACTTCGCCACGCAGCTGCAGCTCATCCTCGGTAGCGCGCGCGAAATT
GACGCGGTGACCGGCGCGACGGCGCTCGACACCCTGCGTACCGGCCTGCGCGCGCCGGAGGCAAGCGTGGCCAGCGTGCG
CGCACTCGACGCCTTCGGCTTTGCCGGCGGCCGCGGCTGGGAATGGGTCGCGGTGGGCTACTTCATCGGCGGCGTGGTAC
TGCTTGCCACCCGCACCATCACCTGGCACCTGCCGGTGGGCTTTCTGGCCGCGCTGGCGCTGATTTCCGGTGCCTTCTGG
CTGACGGACCCGGTGCGCTTCGCCTCGCCGCTGTTCCATCTCGCCAGCGGTGGCGCCATGCTCGGCGCCTTCTTCATCGT
CACCGATCCGGTCAGCGCGGCCACCACCCCGCGCGGCAAGCTGGTGTTCGCCGCCGGTGTCGCGTGCATCGCCTGGCTCA
TCCGCAACTTCGGCGCCTATCCGGAAGGCATTGCGTTCGGCGTTCTGCTGATGAACATGTGCGTACCACTGATCGACATG
AAGACGCAGCCGCGCGTGTTCGGCCATCGCGGAGGCCGGCCGTCATGA

Upstream 100 bases:

>100_bases
TCAGCCCCGCGGTGCAGGCGGAAATCGCCGCGGTGGAAGCGCGCCGCAAAGCGGCGCTCGAAACAGGCGCCGCCCCCGTC
GCCACGCCGGACAACGAGTC

Downstream 100 bases:

>100_bases
CCACCGCCCGTTACGGCGCCGCCCGCACCTCGCTGCGCACCTCGGCGATCATGCTGGTGTTCACCGTGGTGTTCACCGCG
CTGATGGCCTTCACCTACAA

Product: putative electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MMHSPYIRRPASVQRVMLTVLAALLPGIALYVWQIGPGILVNLAIASAAALAGEAAILALRRKPAAAALSDGSALVTAWL
VALCFPPIVPWWLTTLAVLIAVMGAKHLYGGLGQNPFNPAMAAYCTMIVAYPALMSQWPAAGQLDFATQLQLILGSAREI
DAVTGATALDTLRTGLRAPEASVASVRALDAFGFAGGRGWEWVAVGYFIGGVVLLATRTITWHLPVGFLAALALISGAFW
LTDPVRFASPLFHLASGGAMLGAFFIVTDPVSAATTPRGKLVFAAGVACIAWLIRNFGAYPEGIAFGVLLMNMCVPLIDM
KTQPRVFGHRGGRPS

Sequences:

>Translated_335_residues
MMHSPYIRRPASVQRVMLTVLAALLPGIALYVWQIGPGILVNLAIASAAALAGEAAILALRRKPAAAALSDGSALVTAWL
VALCFPPIVPWWLTTLAVLIAVMGAKHLYGGLGQNPFNPAMAAYCTMIVAYPALMSQWPAAGQLDFATQLQLILGSAREI
DAVTGATALDTLRTGLRAPEASVASVRALDAFGFAGGRGWEWVAVGYFIGGVVLLATRTITWHLPVGFLAALALISGAFW
LTDPVRFASPLFHLASGGAMLGAFFIVTDPVSAATTPRGKLVFAAGVACIAWLIRNFGAYPEGIAFGVLLMNMCVPLIDM
KTQPRVFGHRGGRPS
>Mature_335_residues
MMHSPYIRRPASVQRVMLTVLAALLPGIALYVWQIGPGILVNLAIASAAALAGEAAILALRRKPAAAALSDGSALVTAWL
VALCFPPIVPWWLTTLAVLIAVMGAKHLYGGLGQNPFNPAMAAYCTMIVAYPALMSQWPAAGQLDFATQLQLILGSAREI
DAVTGATALDTLRTGLRAPEASVASVRALDAFGFAGGRGWEWVAVGYFIGGVVLLATRTITWHLPVGFLAALALISGAFW
LTDPVRFASPLFHLASGGAMLGAFFIVTDPVSAATTPRGKLVFAAGVACIAWLIRNFGAYPEGIAFGVLLMNMCVPLIDM
KTQPRVFGHRGGRPS

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=345, Percent_Identity=44.6376811594203, Blast_Score=290, Evalue=7e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 35193; Mature: 35193

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHSPYIRRPASVQRVMLTVLAALLPGIALYVWQIGPGILVNLAIASAAALAGEAAILAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RRKPAAAALSDGSALVTAWLVALCFPPIVPWWLTTLAVLIAVMGAKHLYGGLGQNPFNPA
HCCCCHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
MAAYCTMIVAYPALMSQWPAAGQLDFATQLQLILGSAREIDAVTGATALDTLRTGLRAPE
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHCCCCC
ASVASVRALDAFGFAGGRGWEWVAVGYFIGGVVLLATRTITWHLPVGFLAALALISGAFW
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHCCCHH
LTDPVRFASPLFHLASGGAMLGAFFIVTDPVSAATTPRGKLVFAAGVACIAWLIRNFGAY
HCCHHHHHHHHHHHHCCCHHHHEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCC
PEGIAFGVLLMNMCVPLIDMKTQPRVFGHRGGRPS
CCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCC
>Mature Secondary Structure
MMHSPYIRRPASVQRVMLTVLAALLPGIALYVWQIGPGILVNLAIASAAALAGEAAILAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
RRKPAAAALSDGSALVTAWLVALCFPPIVPWWLTTLAVLIAVMGAKHLYGGLGQNPFNPA
HCCCCHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
MAAYCTMIVAYPALMSQWPAAGQLDFATQLQLILGSAREIDAVTGATALDTLRTGLRAPE
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHCHHHHHHHHHHCCCCC
ASVASVRALDAFGFAGGRGWEWVAVGYFIGGVVLLATRTITWHLPVGFLAALALISGAFW
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHCCCHH
LTDPVRFASPLFHLASGGAMLGAFFIVTDPVSAATTPRGKLVFAAGVACIAWLIRNFGAY
HCCHHHHHHHHHHHHCCCHHHHEEEEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHCCC
PEGIAFGVLLMNMCVPLIDMKTQPRVFGHRGGRPS
CCHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA