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The map label for this gene is ihfA [H]

Identifier: 119897376

GI number: 119897376

Start: 1169336

End: 1169647

Strand: Direct

Name: ihfA [H]

Synonym: azo1085

Alternate gene names: 119897376

Gene position: 1169336-1169647 (Clockwise)

Preceding gene: 119897375

Following gene: 119897377

Centisome position: 26.72

GC content: 62.18

Gene sequence:

>312_bases
ATGAACGTTACCTTGACGAAGGCCGAGTTGGCCGACCTGCTGTTCGAGCGGGTCGGGCTCAACAAGCGCGAGGCCAAGGA
CATGGTCGAGGGTTTCTTCGAGGAGATCCGCACCGCGCTCGAGCGGGGCGACAGCGTCAAGCTATCCGGTTTCGGCAACT
TCCAGCTGCGCGACAAACCGCAGCGTCCTGGACGGAATCCGAAGACGGGGGAGGAAATCCCGATTACCGCGCGGCGGGTC
GTGACTTTCCATGCCAGCCAGAAATTGAAGGCCGCCGTGGAGCAGCTGAGCGATGCAAGCAAGCAGCCCTGA

Upstream 100 bases:

>100_bases
CTCATCGGACTCTTGAAGACGCCGAAGTTGATGCCGCCGTGGCTGCGCTAGTGCAACAGGCCGAGCTCGTGTTCGGCGCG
CGACTGCGGGGGGCAGTTGA

Downstream 100 bases:

>100_bases
CGTCGATGACACCGAGCTTCCACCCATCCCGGCCAAGCGCTACTTCACCATCGGTGAAGTCAGCGAGTTGTGTGCGGTCA
AGCCCCACGTGCTGCGATAT

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRV
VTFHASQKLKAAVEQLSDASKQP

Sequences:

>Translated_103_residues
MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRV
VTFHASQKLKAAVEQLSDASKQP
>Mature_103_residues
MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKPQRPGRNPKTGEEIPITARRV
VTFHASQKLKAAVEQLSDASKQP

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=95, Percent_Identity=70.5263157894737, Blast_Score=138, Evalue=9e-35,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=40, Blast_Score=73, Evalue=5e-15,
Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=35.9550561797753, Blast_Score=65, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11555; Mature: 11555

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKP
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
QRPGRNPKTGEEIPITARRVVTFHASQKLKAAVEQLSDASKQP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNVTLTKAELADLLFERVGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKP
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
QRPGRNPKTGEEIPITARRVVTFHASQKLKAAVEQLSDASKQP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA