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The map label for this gene is ihfB

Identifier: 119897364

GI number: 119897364

Start: 1157126

End: 1157410

Strand: Direct

Name: ihfB

Synonym: azo1073

Alternate gene names: 119897364

Gene position: 1157126-1157410 (Clockwise)

Preceding gene: 119897363

Following gene: 119897365

Centisome position: 26.44

GC content: 60.7

Gene sequence:

>285_bases
ATGACCAAATCGGAGCTGATCGCCCAGCTTGCGGCGCGTTTTCCGCAACTGGTCGCAAAGGATGCCGATTACGCGGTCAA
GATGATTCTCGATGCGATGTCCGACGCGCTTGCGCGCGGGGATCGCATCGAAATCCGCGGTTTTGGAAGCTTCGCGCTCA
ACTACCGGCCGCCCCGCGTCGGACGCAATCCGAAGTCGGGAGAGAAGGTTCACGTGCCGGAGAAGTACGTTCCGCATTTC
AAGGCGGGCAAGGAGCTGCGGGAGCGGGTCGATATCGTCGAGTGA

Upstream 100 bases:

>100_bases
CAGAAGCTGGCTTCCGAAAGCTCTGCTGCGTCCGGTACCACCAACCTCGGCGCGCTGTTGAAGGCCAAGCTGAACGAACA
AAAGCAGTAACTGGCCGATC

Downstream 100 bases:

>100_bases
CCGCGCGGTAATCGCTTTTGGATGTCATTGGAAGGAAGGCGGCTGAGGCCGCCTTCTTTTTTGCGACCTGCTCGGGGATA
ATGCCGGCCTATGCGCATCG

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 94; Mature: 93

Protein sequence:

>94_residues
MTKSELIAQLAARFPQLVAKDADYAVKMILDAMSDALARGDRIEIRGFGSFALNYRPPRVGRNPKSGEKVHVPEKYVPHF
KAGKELRERVDIVE

Sequences:

>Translated_94_residues
MTKSELIAQLAARFPQLVAKDADYAVKMILDAMSDALARGDRIEIRGFGSFALNYRPPRVGRNPKSGEKVHVPEKYVPHF
KAGKELRERVDIVE
>Mature_93_residues
TKSELIAQLAARFPQLVAKDADYAVKMILDAMSDALARGDRIEIRGFGSFALNYRPPRVGRNPKSGEKVHVPEKYVPHFK
AGKELRERVDIVE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=92, Percent_Identity=60.8695652173913, Blast_Score=117, Evalue=2e-28,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=35.5555555555556, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=36.2637362637363, Blast_Score=69, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_AZOSB (A1K4D5)

Other databases:

- EMBL:   AM406670
- RefSeq:   YP_932577.1
- ProteinModelPortal:   A1K4D5
- SMR:   A1K4D5
- STRING:   A1K4D5
- GeneID:   4609805
- GenomeReviews:   AM406670_GR
- KEGG:   azo:azo1073
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   PEKYVPH
- PhylomeDB:   A1K4D5
- ProtClustDB:   PRK00199
- BioCyc:   ASP62928:AZO1073-MONOMER
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 10581; Mature: 10450

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSELIAQLAARFPQLVAKDADYAVKMILDAMSDALARGDRIEIRGFGSFALNYRPPRV
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCC
GRNPKSGEKVHVPEKYVPHFKAGKELRERVDIVE
CCCCCCCCEEECCHHHCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure 
TKSELIAQLAARFPQLVAKDADYAVKMILDAMSDALARGDRIEIRGFGSFALNYRPPRV
CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCC
GRNPKSGEKVHVPEKYVPHFKAGKELRERVDIVE
CCCCCCCCEEECCHHHCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA