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The map label for this gene is yciR [C]

Identifier: 119897298

GI number: 119897298

Start: 1081178

End: 1083613

Strand: Reverse

Name: yciR [C]

Synonym: azo1007

Alternate gene names: 119897298

Gene position: 1083613-1081178 (Counterclockwise)

Preceding gene: 119897299

Following gene: 119897283

Centisome position: 24.76

GC content: 70.4

Gene sequence:

>2436_bases
ATGCTGCCGCCGATGAACCCTTCAGGCCGCCCGCGGGGCGACGACCACTCCGACGAAGCACCCAAGGAACCCTTCCGCCC
CGACCTCTCGGAAGGGGCCGAGACCGGCGTCTACCTTGCCCTGCTCGAACTGCTCGACGAGGGCCTGATCATCACCGGCG
ACGAGACGGTGCTCGACGCCAACAGCGCGGCCTGCGCCCTCTTGCAGCGCGACTACCGCGAGCTTGCCGGTCAACCGCTC
GCCAATCTGTTTCCCTCCGAACGCGCCTTCATCGAAGCCCGTGCGCGCCTCTTCATCCAGGGGCAGATGCGCGGAACGCT
GACGGTCGCGCTGCCGGCAGGCGGTACCGCAGCGCTTCGTTTCATCGCTGCGCCGCGGCTGCGCCCGGGCATCCATGCGC
TGATTCTGAGCCCGCTGCCCTCTGCCACCGCCGCCGCCCAACCCGCACCCACACCTGCCGATACCGTGTGGCCGCGGCTG
GCCGCAGCCCTCAGCCAGGGGGTGCTCGTGCTGGACGACGGCGACCGCATCACCGCAGCCAACGCCGCGGCGCTGCATCT
TCTTGGCCGGACGCGAGACGACGTGCTGAGCCGCCCGCTCGCCGACCATCTGGACGTCAGCTGGCCCGCGCCCGGTCAGC
CGGCGCTTGCCCATGTCACCTTGCCGCACGCCAGCGCGCCGCTGCCCGCCCGCGTGCTCGCCGGCCCGCGCGCGGGCTGG
CGGCTGCTCGTATTGCCGCCGCGGACAGAAGACACCGCGACGGAAGGCCTGCATCTGCCGGTGGACGTCTTCGACGCGGC
CAGCCAGGCGATCCTGGTCACCGACGACCAGAACCGCATCGTCGCGGTGAACCGCGCATTCACCGAGATCACCGGCTACA
GCCGCGACGAGGTGCTTGGCCAGAACCCGCGCCTGCTCAGCTCCGGCCGTCAGGAGCCCGCCTTCTACGCCGAGATGTGG
CAGACCCTCGAAGCCAGTGGTCAATGGCAGGGCGAAATCTGGAACCGGCGCCAGAACGGCGAGATCTTTCCCGAGTGGCT
CACGATCACGGCGGTCCGCGACGCTCAGGGCGCCGCACGTCATTACCTGGCGATGTTCACCGACCTCACCGCGCGCCGCC
AGGCGGAGGCGCGCGCCGAGTACATCGCCCACCACGACATCCTCACCGGACTTCCCAACCGCCGGCTGTTCGAAGCCCGC
TTCAAGGAGGCCGCCGAGCAGGCCCGCCGGCGACGCTGCAGCGTAGGCGTGTTGCGCATCGACATCGACCAGTTCAAGGC
GGTTAACCGCGAGCATGGCGACAATACAGGAGACGCCTTTCTGCAACAGATCGCGCGCCGCCTGCAGGCCAGCCTGCCAC
GCGGCGCAGTCGCTGCCCGCGAGCGCAGCGACACCTTCCTCGCCCTGCTGCCCGAACTCGATCTGGCCAGCGCCGCGAGC
CGCGCCGCCGACGACATCCTTGCGGCGCTCGGCCCCGCCTTCCGCACCGAAAGTTGCGAGGTCGCGATCAGCGCCAGCAT
CGGCATCGCACTGTTTCCAGGCGATGGCGCCGACCTCGACACCTTGCTGCGTCACGCCGGCATCGCGCTGCGCCAGGCCC
GCCAGTTGGGCGGCAACAGCCATCAGCGCTACCAGGCTGGCCAGGGTGGCGGCATCGAGCAAGCGGAGTTCGGCGCCGAA
TTGCACGGCGCGCTCACGCGCCGCCAACTCGAAGTCTATTTCCAGCCGCTGGTCGATGCGCGCAGCGGCCGCGTGCGCGC
AGGCGAAGCGCTACTGCGCTGGCGCCACCCCGAACTCGGCCTCATTCCGTACCGCCACTTCGTCGCGACCGCCCGCCACA
ACGGGCTCGTCGCCGCCTTTGGCGACTGGGCGCTCGTCACCGCGTGCAACGCCGCGGCGCGCTGGCCCCAAGGCGCGCAG
GGCGTGCCTGCGGTGACGGTCAACGTTGCGCTCGAACAGGTTCTGCGCGGGGATTTCGCCACCACCGTGGACAAGGCGCT
GGCGGCCAGCGGCCTGGCGGCGACGCGGCTGGAACTCGATCTCGACGAGGCCATCCTCGCCAGCGACGACGAGGTCACGC
TCGCCACCCTGCGAACGCTGGCCAAGCGCGGCATCCGCTTCGCGATCGACGATTTCGGCCGTGGCCTGTCGTCCATTCCG
CGTCTGCGCCGATTCCCGGTGCAGGCACTCAAGCTCGACCCGGCACTGGTCGGGGGCGTTGGCAAGGACGAGGACGCCGA
AGCGGTGGTCGAAGCGATCGCGCGCCTGGCGGCCTCGCTCGGGATAGAGGTGTTGGCACGCGGGGTGGCAGACCCGGCAC
AGCAGGCCTTCCTCTCCGCGCTCGACTGTCACTTCCAGCAGGGCCCGCTATTCGGCGCCCCGCTGCCGGCGCCGGCGTTC
GCAGCCCTGCTCGAAACGGCGACGGGCGTTCAGTAG

Upstream 100 bases:

>100_bases
TAGGGCCGCCTCCCCCGGCTATTCCGGGGCTGGCGCGGCAGCGCTTCAAGTATTCTGGTGACCCGCCGATAAGTGCGGGG
AACACCGGAAAATCCTGGAC

Downstream 100 bases:

>100_bases
TCCATCAGGCTGCGGCAGGTTTCCTCGCGCCCGGTCATCGCGCTGAAGCGCTTCAGCCGGTCACGCACGAAGTCGTCGGG
AACGCGCCGGTCTGCGCAGT

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 811; Mature: 811

Protein sequence:

>811_residues
MLPPMNPSGRPRGDDHSDEAPKEPFRPDLSEGAETGVYLALLELLDEGLIITGDETVLDANSAACALLQRDYRELAGQPL
ANLFPSERAFIEARARLFIQGQMRGTLTVALPAGGTAALRFIAAPRLRPGIHALILSPLPSATAAAQPAPTPADTVWPRL
AAALSQGVLVLDDGDRITAANAAALHLLGRTRDDVLSRPLADHLDVSWPAPGQPALAHVTLPHASAPLPARVLAGPRAGW
RLLVLPPRTEDTATEGLHLPVDVFDAASQAILVTDDQNRIVAVNRAFTEITGYSRDEVLGQNPRLLSSGRQEPAFYAEMW
QTLEASGQWQGEIWNRRQNGEIFPEWLTITAVRDAQGAARHYLAMFTDLTARRQAEARAEYIAHHDILTGLPNRRLFEAR
FKEAAEQARRRRCSVGVLRIDIDQFKAVNREHGDNTGDAFLQQIARRLQASLPRGAVAARERSDTFLALLPELDLASAAS
RAADDILAALGPAFRTESCEVAISASIGIALFPGDGADLDTLLRHAGIALRQARQLGGNSHQRYQAGQGGGIEQAEFGAE
LHGALTRRQLEVYFQPLVDARSGRVRAGEALLRWRHPELGLIPYRHFVATARHNGLVAAFGDWALVTACNAAARWPQGAQ
GVPAVTVNVALEQVLRGDFATTVDKALAASGLAATRLELDLDEAILASDDEVTLATLRTLAKRGIRFAIDDFGRGLSSIP
RLRRFPVQALKLDPALVGGVGKDEDAEAVVEAIARLAASLGIEVLARGVADPAQQAFLSALDCHFQQGPLFGAPLPAPAF
AALLETATGVQ

Sequences:

>Translated_811_residues
MLPPMNPSGRPRGDDHSDEAPKEPFRPDLSEGAETGVYLALLELLDEGLIITGDETVLDANSAACALLQRDYRELAGQPL
ANLFPSERAFIEARARLFIQGQMRGTLTVALPAGGTAALRFIAAPRLRPGIHALILSPLPSATAAAQPAPTPADTVWPRL
AAALSQGVLVLDDGDRITAANAAALHLLGRTRDDVLSRPLADHLDVSWPAPGQPALAHVTLPHASAPLPARVLAGPRAGW
RLLVLPPRTEDTATEGLHLPVDVFDAASQAILVTDDQNRIVAVNRAFTEITGYSRDEVLGQNPRLLSSGRQEPAFYAEMW
QTLEASGQWQGEIWNRRQNGEIFPEWLTITAVRDAQGAARHYLAMFTDLTARRQAEARAEYIAHHDILTGLPNRRLFEAR
FKEAAEQARRRRCSVGVLRIDIDQFKAVNREHGDNTGDAFLQQIARRLQASLPRGAVAARERSDTFLALLPELDLASAAS
RAADDILAALGPAFRTESCEVAISASIGIALFPGDGADLDTLLRHAGIALRQARQLGGNSHQRYQAGQGGGIEQAEFGAE
LHGALTRRQLEVYFQPLVDARSGRVRAGEALLRWRHPELGLIPYRHFVATARHNGLVAAFGDWALVTACNAAARWPQGAQ
GVPAVTVNVALEQVLRGDFATTVDKALAASGLAATRLELDLDEAILASDDEVTLATLRTLAKRGIRFAIDDFGRGLSSIP
RLRRFPVQALKLDPALVGGVGKDEDAEAVVEAIARLAASLGIEVLARGVADPAQQAFLSALDCHFQQGPLFGAPLPAPAF
AALLETATGVQ
>Mature_811_residues
MLPPMNPSGRPRGDDHSDEAPKEPFRPDLSEGAETGVYLALLELLDEGLIITGDETVLDANSAACALLQRDYRELAGQPL
ANLFPSERAFIEARARLFIQGQMRGTLTVALPAGGTAALRFIAAPRLRPGIHALILSPLPSATAAAQPAPTPADTVWPRL
AAALSQGVLVLDDGDRITAANAAALHLLGRTRDDVLSRPLADHLDVSWPAPGQPALAHVTLPHASAPLPARVLAGPRAGW
RLLVLPPRTEDTATEGLHLPVDVFDAASQAILVTDDQNRIVAVNRAFTEITGYSRDEVLGQNPRLLSSGRQEPAFYAEMW
QTLEASGQWQGEIWNRRQNGEIFPEWLTITAVRDAQGAARHYLAMFTDLTARRQAEARAEYIAHHDILTGLPNRRLFEAR
FKEAAEQARRRRCSVGVLRIDIDQFKAVNREHGDNTGDAFLQQIARRLQASLPRGAVAARERSDTFLALLPELDLASAAS
RAADDILAALGPAFRTESCEVAISASIGIALFPGDGADLDTLLRHAGIALRQARQLGGNSHQRYQAGQGGGIEQAEFGAE
LHGALTRRQLEVYFQPLVDARSGRVRAGEALLRWRHPELGLIPYRHFVATARHNGLVAAFGDWALVTACNAAARWPQGAQ
GVPAVTVNVALEQVLRGDFATTVDKALAASGLAATRLELDLDEAILASDDEVTLATLRTLAKRGIRFAIDDFGRGLSSIP
RLRRFPVQALKLDPALVGGVGKDEDAEAVVEAIARLAASLGIEVLARGVADPAQQAFLSALDCHFQQGPLFGAPLPAPAF
AALLETATGVQ

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=580, Percent_Identity=30.5172413793103, Blast_Score=244, Evalue=2e-65,
Organism=Escherichia coli, GI87081921, Length=440, Percent_Identity=27.0454545454545, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI226510982, Length=421, Percent_Identity=24.9406175771971, Blast_Score=117, Evalue=3e-27,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=29.4354838709677, Blast_Score=109, Evalue=9e-25,
Organism=Escherichia coli, GI87081980, Length=249, Percent_Identity=28.5140562248996, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1786507, Length=366, Percent_Identity=24.0437158469945, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=27.5720164609054, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=23.5772357723577, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787055, Length=234, Percent_Identity=28.2051282051282, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI87081881, Length=257, Percent_Identity=26.8482490272374, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1788381, Length=301, Percent_Identity=25.9136212624585, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI87082096, Length=154, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1788085, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=6e-12,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=31.0975609756098, Blast_Score=66, Evalue=9e-12,
Organism=Escherichia coli, GI1788849, Length=238, Percent_Identity=26.0504201680672, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 87043; Mature: 87043

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPPMNPSGRPRGDDHSDEAPKEPFRPDLSEGAETGVYLALLELLDEGLIITGDETVLDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCEEEECCCEEEEC
NSAACALLQRDYRELAGQPLANLFPSERAFIEARARLFIQGQMRGTLTVALPAGGTAALR
CHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHEEEEEEECCEEEEEEECCCCHHHHH
FIAAPRLRPGIHALILSPLPSATAAAQPAPTPADTVWPRLAAALSQGVLVLDDGDRITAA
HHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCEEEEC
NAAALHLLGRTRDDVLSRPLADHLDVSWPAPGQPALAHVTLPHASAPLPARVLAGPRAGW
CHHHHHHHCCCHHHHHHCCCHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCC
RLLVLPPRTEDTATEGLHLPVDVFDAASQAILVTDDQNRIVAVNRAFTEITGYSRDEVLG
EEEEECCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCC
QNPRLLSSGRQEPAFYAEMWQTLEASGQWQGEIWNRRQNGEIFPEWLTITAVRDAQGAAR
CCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCHHHHH
HYLAMFTDLTARRQAEARAEYIAHHDILTGLPNRRLFEARFKEAAEQARRRRCSVGVLRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
DIDQFKAVNREHGDNTGDAFLQQIARRLQASLPRGAVAARERSDTFLALLPELDLASAAS
EHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEECCCCHHHHHH
RAADDILAALGPAFRTESCEVAISASIGIALFPGDGADLDTLLRHAGIALRQARQLGGNS
HHHHHHHHHHCCHHCCCCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
HQRYQAGQGGGIEQAEFGAELHGALTRRQLEVYFQPLVDARSGRVRAGEALLRWRHPELG
CHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC
LIPYRHFVATARHNGLVAAFGDWALVTACNAAARWPQGAQGVPAVTVNVALEQVLRGDFA
CCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCHH
TTVDKALAASGLAATRLELDLDEAILASDDEVTLATLRTLAKRGIRFAIDDFGRGLSSIP
HHHHHHHHHCCCHHEEEEECCCHHHHCCCCCHHHHHHHHHHHCCCEEEHHHHCCCHHHHH
RLRRFPVQALKLDPALVGGVGKDEDAEAVVEAIARLAASLGIEVLARGVADPAQQAFLSA
HHHHCCHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LDCHFQQGPLFGAPLPAPAFAALLETATGVQ
HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLPPMNPSGRPRGDDHSDEAPKEPFRPDLSEGAETGVYLALLELLDEGLIITGDETVLDA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHCCEEEECCCEEEEC
NSAACALLQRDYRELAGQPLANLFPSERAFIEARARLFIQGQMRGTLTVALPAGGTAALR
CHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHEEEEEEECCEEEEEEECCCCHHHHH
FIAAPRLRPGIHALILSPLPSATAAAQPAPTPADTVWPRLAAALSQGVLVLDDGDRITAA
HHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCEEEEC
NAAALHLLGRTRDDVLSRPLADHLDVSWPAPGQPALAHVTLPHASAPLPARVLAGPRAGW
CHHHHHHHCCCHHHHHHCCCHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCC
RLLVLPPRTEDTATEGLHLPVDVFDAASQAILVTDDQNRIVAVNRAFTEITGYSRDEVLG
EEEEECCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCEEEEEHHHHHHCCCCHHHHCC
QNPRLLSSGRQEPAFYAEMWQTLEASGQWQGEIWNRRQNGEIFPEWLTITAVRDAQGAAR
CCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEEEEEECCCHHHHH
HYLAMFTDLTARRQAEARAEYIAHHDILTGLPNRRLFEARFKEAAEQARRRRCSVGVLRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE
DIDQFKAVNREHGDNTGDAFLQQIARRLQASLPRGAVAARERSDTFLALLPELDLASAAS
EHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCEEEEECCCCHHHHHH
RAADDILAALGPAFRTESCEVAISASIGIALFPGDGADLDTLLRHAGIALRQARQLGGNS
HHHHHHHHHHCCHHCCCCCCEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
HQRYQAGQGGGIEQAEFGAELHGALTRRQLEVYFQPLVDARSGRVRAGEALLRWRHPELG
CHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCC
LIPYRHFVATARHNGLVAAFGDWALVTACNAAARWPQGAQGVPAVTVNVALEQVLRGDFA
CCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHCCCHH
TTVDKALAASGLAATRLELDLDEAILASDDEVTLATLRTLAKRGIRFAIDDFGRGLSSIP
HHHHHHHHHCCCHHEEEEECCCHHHHCCCCCHHHHHHHHHHHCCCEEEHHHHCCCHHHHH
RLRRFPVQALKLDPALVGGVGKDEDAEAVVEAIARLAASLGIEVLARGVADPAQQAFLSA
HHHHCCHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LDCHFQQGPLFGAPLPAPAFAALLETATGVQ
HHHHCCCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]