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The map label for this gene is yciR [C]

Identifier: 119897241

GI number: 119897241

Start: 1021632

End: 1023464

Strand: Direct

Name: yciR [C]

Synonym: azo0950

Alternate gene names: 119897241

Gene position: 1021632-1023464 (Clockwise)

Preceding gene: 119897240

Following gene: 119897242

Centisome position: 23.35

GC content: 70.54

Gene sequence:

>1833_bases
GTGGCCGCTCTGCTGTTACCCGCCCTGCTGGCGGGCGCCTGCGCGCTGGCGCTGGGGCTTGCGCTGCGCTTGAGGGCACT
GCACCGCCAACGGGATGCCGCCGCGGCGCAGGCCGCCGAAGCGGAACTCCGCTTTCGCAGCATCTTCGACAACGCCGTGC
TCGGCATGTACCAGACGACGGAAGACGGCCACTACCTCGCCGCGAACCAGGCGCTGGCCGACCTCTACGGTTACCCCACG
CCCGCCGCGCTGATGGCCGGACTGTCCGATATCGCCGGCCGGCTCTATGTGGAACGCGGCCGGCGCGACGACTTCAAGGC
GCTGATCCGGGCGCGAGCGCGCGTGGTCGATTTCGAATCCGAGGTGTATCGCCGCGACGGCGAGCGCATCTGGATCAGCG
AGAACGCGCACGCGGTGCACGGTGCCGACGGGCGTTTCCTGTACTACGAGGGTTCGGTCGAGGATATCTCCGAGCGCCGC
CGCCACCGCACCCTGCTTGAGCATCAGGCCACCCACGACCCGGTCACCGGCCTGCCCAACCGCTATCTGCTGCAGGACCG
CCTCGACCGCGCCATGGGCGCGGCGCGGCGGCGCGACGAACGCCTGATGGTGGCCTTCATCGACCTCGACAACTTCAAGT
TCGTGAACGACAGCATGGGCCACGCGGTGGGCGACCGTCTGCTGGTGGAGATGGCGCGGCGGCTGCAGGCCTGCGTGCGC
GAGACCGATACGCTGGCGCGCTACGGCGGCGACGAGTTCGTGCTCATCATCAGTAGCGCGGCCGCGCAGGCCGGCCCGGT
GCAGGTGCTCGAACGCGTGCACGATGCGGTGCGCCAGCCGCTGGCGCTGGAAGGGCGCGACCTCAGCGTGGGCTGCTCGA
TGGGCGTGGCGGTCTATCCGCGCGACGGCGCCGATCTGGAAACCCTGCTGCGCCACGCCGATGCGGCGATGTACCAGGCC
AAGGCGGCGGGCAAGGGCCAGTTCCGCTTCTACGAGGCGGGTCTGAATGCCGCCGTGCAGGAGCGGCTGGCGCTGGAGTC
GGCGTTGCGGCGCACGCTGGAGAACGATAGCGACGAGTTCCAGGTGGCGTATCAACCCAAGTTCGATGCGAGCGGCGACG
TCTGCGGTTGCGAGGCGCTGGCACGCTGGCACAGCACGGAATCCGGCACGGTCGCGCCAGACCGCTTCATTCCGCTGGCG
GAAGAGACGGGCCTGATCGTGCTGCTGACCGCGCGCGTGCTGCACGCCGCCTGCGCCGAGGCGGTGCGCTGGTCGGGGCA
GGGCGGCGCGGCCCCTGGCGTGGCGGTGAACATTTCGGCGCGCCACTTCCGCCGCGACGGCCAGTTGGCGGCGCTGGTGC
GCGCGGCGCTGGAGCAAAGCGGCCTGCCGCCGGGGCGGCTGCAACTGGAGCTGACCGAAAGCCTGTTCGTCGGCAATGTG
GAGGAAACGGTGGCGATTCTGGGCGAGCTGAAGGCGCTGGGCGTCACGATCGCGATCGACGACTTCGGTACCGGCTACTC
GTCGCTCGCTTACCTGAAGCGCTTTCCGGTGGATGTGCTGAAGATCGACCGCTCCTTCGTCGGCGAATGCGACCGCGCGG
ATGATGCGCGTTCGATCACCGGCGCGGTGCTGTCGCTGGGCCGCAGTCTGGGTCTGCGCGTGGTGGCCGAGGGCGTCGAA
CGTCCGGCCCAGGCCGCCTACCTGCTCGCCCACGGCTGCGACGAGCTGCAGGGCTATCTCTACGCGCAGCCGATGCCGGC
TGCGGCGCTGCGCGACTTCCTCGCCAGCTACCGCGGGGGCCGGCGCGCGCCGGCGCTGGCGGCCGTGGGCTGA

Upstream 100 bases:

>100_bases
TGTGGCTCGCGCAGGAGCGTTCCGGCATCGAGCACGCCCTGCACGGCCTGCCCTCCGCCCGTCCGCGCTGGGGTGAGCGC
GCCGGCGTGCGGGGCTGAGG

Downstream 100 bases:

>100_bases
AGGCCGGAGAGGCGGCACAATCCGTCGTCCCGTTGCAAGGAGTGCGTGCCGATGAAGACCCGTCTTGCCGACTGTCCCGC
CTATGTCACGAAGGACGGTT

Product: GGEF/EAL/PAS/PAC-domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 610; Mature: 609

Protein sequence:

>610_residues
MAALLLPALLAGACALALGLALRLRALHRQRDAAAAQAAEAELRFRSIFDNAVLGMYQTTEDGHYLAANQALADLYGYPT
PAALMAGLSDIAGRLYVERGRRDDFKALIRARARVVDFESEVYRRDGERIWISENAHAVHGADGRFLYYEGSVEDISERR
RHRTLLEHQATHDPVTGLPNRYLLQDRLDRAMGAARRRDERLMVAFIDLDNFKFVNDSMGHAVGDRLLVEMARRLQACVR
ETDTLARYGGDEFVLIISSAAAQAGPVQVLERVHDAVRQPLALEGRDLSVGCSMGVAVYPRDGADLETLLRHADAAMYQA
KAAGKGQFRFYEAGLNAAVQERLALESALRRTLENDSDEFQVAYQPKFDASGDVCGCEALARWHSTESGTVAPDRFIPLA
EETGLIVLLTARVLHAACAEAVRWSGQGGAAPGVAVNISARHFRRDGQLAALVRAALEQSGLPPGRLQLELTESLFVGNV
EETVAILGELKALGVTIAIDDFGTGYSSLAYLKRFPVDVLKIDRSFVGECDRADDARSITGAVLSLGRSLGLRVVAEGVE
RPAQAAYLLAHGCDELQGYLYAQPMPAAALRDFLASYRGGRRAPALAAVG

Sequences:

>Translated_610_residues
MAALLLPALLAGACALALGLALRLRALHRQRDAAAAQAAEAELRFRSIFDNAVLGMYQTTEDGHYLAANQALADLYGYPT
PAALMAGLSDIAGRLYVERGRRDDFKALIRARARVVDFESEVYRRDGERIWISENAHAVHGADGRFLYYEGSVEDISERR
RHRTLLEHQATHDPVTGLPNRYLLQDRLDRAMGAARRRDERLMVAFIDLDNFKFVNDSMGHAVGDRLLVEMARRLQACVR
ETDTLARYGGDEFVLIISSAAAQAGPVQVLERVHDAVRQPLALEGRDLSVGCSMGVAVYPRDGADLETLLRHADAAMYQA
KAAGKGQFRFYEAGLNAAVQERLALESALRRTLENDSDEFQVAYQPKFDASGDVCGCEALARWHSTESGTVAPDRFIPLA
EETGLIVLLTARVLHAACAEAVRWSGQGGAAPGVAVNISARHFRRDGQLAALVRAALEQSGLPPGRLQLELTESLFVGNV
EETVAILGELKALGVTIAIDDFGTGYSSLAYLKRFPVDVLKIDRSFVGECDRADDARSITGAVLSLGRSLGLRVVAEGVE
RPAQAAYLLAHGCDELQGYLYAQPMPAAALRDFLASYRGGRRAPALAAVG
>Mature_609_residues
AALLLPALLAGACALALGLALRLRALHRQRDAAAAQAAEAELRFRSIFDNAVLGMYQTTEDGHYLAANQALADLYGYPTP
AALMAGLSDIAGRLYVERGRRDDFKALIRARARVVDFESEVYRRDGERIWISENAHAVHGADGRFLYYEGSVEDISERRR
HRTLLEHQATHDPVTGLPNRYLLQDRLDRAMGAARRRDERLMVAFIDLDNFKFVNDSMGHAVGDRLLVEMARRLQACVRE
TDTLARYGGDEFVLIISSAAAQAGPVQVLERVHDAVRQPLALEGRDLSVGCSMGVAVYPRDGADLETLLRHADAAMYQAK
AAGKGQFRFYEAGLNAAVQERLALESALRRTLENDSDEFQVAYQPKFDASGDVCGCEALARWHSTESGTVAPDRFIPLAE
ETGLIVLLTARVLHAACAEAVRWSGQGGAAPGVAVNISARHFRRDGQLAALVRAALEQSGLPPGRLQLELTESLFVGNVE
ETVAILGELKALGVTIAIDDFGTGYSSLAYLKRFPVDVLKIDRSFVGECDRADDARSITGAVLSLGRSLGLRVVAEGVER
PAQAAYLLAHGCDELQGYLYAQPMPAAALRDFLASYRGGRRAPALAAVG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=473, Percent_Identity=37.8435517970402, Blast_Score=321, Evalue=1e-88,
Organism=Escherichia coli, GI87081921, Length=440, Percent_Identity=34.0909090909091, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI226510982, Length=431, Percent_Identity=31.554524361949, Blast_Score=179, Evalue=6e-46,
Organism=Escherichia coli, GI87081980, Length=253, Percent_Identity=40.7114624505929, Blast_Score=155, Evalue=8e-39,
Organism=Escherichia coli, GI1786507, Length=266, Percent_Identity=35.3383458646617, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI87081743, Length=234, Percent_Identity=35.4700854700855, Blast_Score=143, Evalue=4e-35,
Organism=Escherichia coli, GI1790496, Length=256, Percent_Identity=33.59375, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=35.8333333333333, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI87081845, Length=254, Percent_Identity=34.6456692913386, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1787055, Length=260, Percent_Identity=31.1538461538462, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788381, Length=440, Percent_Identity=26.1363636363636, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI87082096, Length=443, Percent_Identity=25.7336343115124, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=37.012987012987, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1788849, Length=255, Percent_Identity=30.9803921568627, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=32.9411764705882, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=34.640522875817, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=32.7683615819209, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=174, Percent_Identity=32.7586206896552, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=26.6666666666667, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=31.7073170731707, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787802, Length=136, Percent_Identity=30.8823529411765, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=28.1437125748503, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=101, Percent_Identity=32.6732673267327, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 66285; Mature: 66154

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALLLPALLAGACALALGLALRLRALHRQRDAAAAQAAEAELRFRSIFDNAVLGMYQTT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC
EDGHYLAANQALADLYGYPTPAALMAGLSDIAGRLYVERGRRDDFKALIRARARVVDFES
CCCCEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
EVYRRDGERIWISENAHAVHGADGRFLYYEGSVEDISERRRHRTLLEHQATHDPVTGLPN
HHHHCCCCEEEEECCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
RYLLQDRLDRAMGAARRRDERLMVAFIDLDNFKFVNDSMGHAVGDRLLVEMARRLQACVR
HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
ETDTLARYGGDEFVLIISSAAAQAGPVQVLERVHDAVRQPLALEGRDLSVGCSMGVAVYP
HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEECCCCEEEECCCCEEEEC
RDGADLETLLRHADAAMYQAKAAGKGQFRFYEAGLNAAVQERLALESALRRTLENDSDEF
CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHCCCCCCE
QVAYQPKFDASGDVCGCEALARWHSTESGTVAPDRFIPLAEETGLIVLLTARVLHAACAE
EEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHH
AVRWSGQGGAAPGVAVNISARHFRRDGQLAALVRAALEQSGLPPGRLQLELTESLFVGNV
HHHCCCCCCCCCCEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCH
EETVAILGELKALGVTIAIDDFGTGYSSLAYLKRFPVDVLKIDRSFVGECDRADDARSIT
HHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHCCHHHHHHCHHHHCCCCCCCCHHHHH
GAVLSLGRSLGLRVVAEGVERPAQAAYLLAHGCDELQGYLYAQPMPAAALRDFLASYRGG
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHCCEEEECCCCHHHHHHHHHHHCCC
RRAPALAAVG
CCCCCCCCCC
>Mature Secondary Structure 
AALLLPALLAGACALALGLALRLRALHRQRDAAAAQAAEAELRFRSIFDNAVLGMYQTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC
EDGHYLAANQALADLYGYPTPAALMAGLSDIAGRLYVERGRRDDFKALIRARARVVDFES
CCCCEEEHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
EVYRRDGERIWISENAHAVHGADGRFLYYEGSVEDISERRRHRTLLEHQATHDPVTGLPN
HHHHCCCCEEEEECCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
RYLLQDRLDRAMGAARRRDERLMVAFIDLDNFKFVNDSMGHAVGDRLLVEMARRLQACVR
HHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
ETDTLARYGGDEFVLIISSAAAQAGPVQVLERVHDAVRQPLALEGRDLSVGCSMGVAVYP
HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEECCCCEEEECCCCEEEEC
RDGADLETLLRHADAAMYQAKAAGKGQFRFYEAGLNAAVQERLALESALRRTLENDSDEF
CCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHCCCCCCE
QVAYQPKFDASGDVCGCEALARWHSTESGTVAPDRFIPLAEETGLIVLLTARVLHAACAE
EEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHH
AVRWSGQGGAAPGVAVNISARHFRRDGQLAALVRAALEQSGLPPGRLQLELTESLFVGNV
HHHCCCCCCCCCCEEEEECHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCH
EETVAILGELKALGVTIAIDDFGTGYSSLAYLKRFPVDVLKIDRSFVGECDRADDARSIT
HHHHHHHHHHHHCEEEEEEECCCCCHHHHHHHHHCCHHHHHHCHHHHCCCCCCCCHHHHH
GAVLSLGRSLGLRVVAEGVERPAQAAYLLAHGCDELQGYLYAQPMPAAALRDFLASYRGG
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHHCCEEEECCCCHHHHHHHHHHHCCC
RRAPALAAVG
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]