| Definition | Azoarcus sp. BH72 chromosome, complete genome. |
|---|---|
| Accession | NC_008702 |
| Length | 4,376,040 |
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The map label for this gene is mutM [H]
Identifier: 119897050
GI number: 119897050
Start: 810989
End: 811807
Strand: Direct
Name: mutM [H]
Synonym: azo0759
Alternate gene names: 119897050
Gene position: 810989-811807 (Clockwise)
Preceding gene: 119897042
Following gene: 119897051
Centisome position: 18.53
GC content: 71.31
Gene sequence:
>819_bases ATGCCCGAACTGCCCGAAGTGGAAACCACCTGCCGCGGCGTGCGCCCTCATGTCGAAGGTCGGCGCCTGAGCGCGGTCGT GGTGCGAAACCCGCGGCTGCGCGTGCCGGTGCCGGACAACCTTGCCCAGCTCGCCGCGGGCCAGGTGCTCGCCAGCGTGT CGCGGCGGGCGAAGTACCTGTTGCTCGATTTCGATCGCGGCGGGCTTGTCGTGCATCTCGGCATGTCGGGCAGTCTGCGG GTGGTCGCGGCGGGGGAGCCGGCCGGCAAGCACGACCATCTCGACCTGGTGTTCGGCGAGACTTCGCTGCGGCTGCGCGA CCCGCGGCGTTTCGGCATGGTGCTCTGGCAGGAGGGCGGCGCCGTCGCCCACCCGCTGCTGGCCGGGCTGGGGCCGGAGC CGCTGGACGACGCGTTCGATGCGCGCTACTGGGTGGCCGCGACCCGCGGCCTGCGGGCCCCCATCAAGCATGTGCTGATG GATGGCCGGCGGGTGGTCGGCGTGGGCAACATCTACGCCTCCGAAAGTCTGTTCCGGTCGCGTATCCATCCGCTGGAGCC GGCGGGTGCGATCGGGCCGCAGCGCGCGGCGCGGCTGGTGCTGGCGGTGAAGGAAACGCTAACCGAAGCGATCGCCGCGG GCGGCAGCACCCTGCGCGATTTCGTCGGTGGCGACGGCCGGCCCGGATACTTCCAGCAGCAGTATTTCGCTTACGACCGT GAAGGCGAAGCCTGCCGCGTGTGCGGCAGCGTCATCCGCCGCTTCGTCAGCGGCCAGCGCGCGACCTTCTTCTGTCCGCG CTGCCAGCGCCGCGCCTGA
Upstream 100 bases:
>100_bases CGGCCATTGGAGGGGTGTTCTAGAATTCCGTTCGCCTCATGGTAGGTACTTTGCAAGGCGCCCCGCAAGTCGGTGCGCGC CGAGTCGATCCGGAGTCCCG
Downstream 100 bases:
>100_bases ATAGCGACGGCGATGCCGGCCGCTGCCCGCGGTCCGACCGACGGCGTGGAAGCCGGTCGCGAAGGGCGCTATGCTGACGG TGTTTTTTGCCGCAGAAAAT
Product: formamidopyrimidine-DNA glycosylase
Products: NA
Alternate protein names: Fapy-DNA glycosylase; DNA-(apurinic or apyrimidinic site) lyase mutM; AP lyase mutM [H]
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MPELPEVETTCRGVRPHVEGRRLSAVVVRNPRLRVPVPDNLAQLAAGQVLASVSRRAKYLLLDFDRGGLVVHLGMSGSLR VVAAGEPAGKHDHLDLVFGETSLRLRDPRRFGMVLWQEGGAVAHPLLAGLGPEPLDDAFDARYWVAATRGLRAPIKHVLM DGRRVVGVGNIYASESLFRSRIHPLEPAGAIGPQRAARLVLAVKETLTEAIAAGGSTLRDFVGGDGRPGYFQQQYFAYDR EGEACRVCGSVIRRFVSGQRATFFCPRCQRRA
Sequences:
>Translated_272_residues MPELPEVETTCRGVRPHVEGRRLSAVVVRNPRLRVPVPDNLAQLAAGQVLASVSRRAKYLLLDFDRGGLVVHLGMSGSLR VVAAGEPAGKHDHLDLVFGETSLRLRDPRRFGMVLWQEGGAVAHPLLAGLGPEPLDDAFDARYWVAATRGLRAPIKHVLM DGRRVVGVGNIYASESLFRSRIHPLEPAGAIGPQRAARLVLAVKETLTEAIAAGGSTLRDFVGGDGRPGYFQQQYFAYDR EGEACRVCGSVIRRFVSGQRATFFCPRCQRRA >Mature_271_residues PELPEVETTCRGVRPHVEGRRLSAVVVRNPRLRVPVPDNLAQLAAGQVLASVSRRAKYLLLDFDRGGLVVHLGMSGSLRV VAAGEPAGKHDHLDLVFGETSLRLRDPRRFGMVLWQEGGAVAHPLLAGLGPEPLDDAFDARYWVAATRGLRAPIKHVLMD GRRVVGVGNIYASESLFRSRIHPLEPAGAIGPQRAARLVLAVKETLTEAIAAGGSTLRDFVGGDGRPGYFQQQYFAYDRE GEACRVCGSVIRRFVSGQRATFFCPRCQRRA
Specific function: Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyr
COG id: COG0266
COG function: function code L; Formamidopyrimidine-DNA glycosylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FPG-type zinc finger [H]
Homologues:
Organism=Escherichia coli, GI1790066, Length=271, Percent_Identity=49.0774907749078, Blast_Score=248, Evalue=3e-67,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015886 - InterPro: IPR015887 - InterPro: IPR000191 - InterPro: IPR012319 - InterPro: IPR020629 - InterPro: IPR010979 - InterPro: IPR000214 - InterPro: IPR010663 [H]
Pfam domain/function: PF01149 Fapy_DNA_glyco; PF06831 H2TH; PF06827 zf-FPG_IleRS [H]
EC number: =3.2.2.23; =4.2.99.18 [H]
Molecular weight: Translated: 29697; Mature: 29565
Theoretical pI: Translated: 10.34; Mature: 10.34
Prosite motif: PS01242 ZF_FPG_1 ; PS51066 ZF_FPG_2 ; PS51068 FPG_CAT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPELPEVETTCRGVRPHVEGRRLSAVVVRNPRLRVPVPDNLAQLAAGQVLASVSRRAKYL CCCCCCHHHHHCCCCCCCCCCEEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHCCEEE LLDFDRGGLVVHLGMSGSLRVVAAGEPAGKHDHLDLVFGETSLRLRDPRRFGMVLWQEGG EEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCEEEEECCHHHCEEEEECCC AVAHPLLAGLGPEPLDDAFDARYWVAATRGLRAPIKHVLMDGRRVVGVGNIYASESLFRS CHHHHHHHCCCCCCCCHHHCCHHHHHHHCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHH RIHPLEPAGAIGPQRAARLVLAVKETLTEAIAAGGSTLRDFVGGDGRPGYFQQQYFAYDR HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHEECC EGEACRVCGSVIRRFVSGQRATFFCPRCQRRA CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC >Mature Secondary Structure PELPEVETTCRGVRPHVEGRRLSAVVVRNPRLRVPVPDNLAQLAAGQVLASVSRRAKYL CCCCCHHHHHCCCCCCCCCCEEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHCCEEE LLDFDRGGLVVHLGMSGSLRVVAAGEPAGKHDHLDLVFGETSLRLRDPRRFGMVLWQEGG EEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCEEEEECCHHHCEEEEECCC AVAHPLLAGLGPEPLDDAFDARYWVAATRGLRAPIKHVLMDGRRVVGVGNIYASESLFRS CHHHHHHHCCCCCCCCHHHCCHHHHHHHCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHH RIHPLEPAGAIGPQRAARLVLAVKETLTEAIAAGGSTLRDFVGGDGRPGYFQQQYFAYDR HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHEECC EGEACRVCGSVIRRFVSGQRATFFCPRCQRRA CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA