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The map label for this gene is yciR [C]

Identifier: 119896913

GI number: 119896913

Start: 648721

End: 651168

Strand: Reverse

Name: yciR [C]

Synonym: azo0622

Alternate gene names: 119896913

Gene position: 651168-648721 (Counterclockwise)

Preceding gene: 119896914

Following gene: 119896912

Centisome position: 14.88

GC content: 68.55

Gene sequence:

>2448_bases
GTGCGCCTGCCCTTCCGGCACTCCTCGATCCGGTTCCGACTGCTGCTGGCCAGCACCGCAGTGCAGGTGGTGCTGCTCAC
GCTGCTGCTGGCCAACAGCGTGCGGCTGATGAACGACGCGGCCTCGGCCAGCCTCGCCACGCTGACCACGCAGAACGCCA
GCATGCTGCACGCCATGGCCACCGCCTACGGCGAACAGGGCCGCTACCGCACGCTTCAGGACGTGCTCGGCGAACTGCTC
ACCGACTCCACGGAAGGCCTGGTCTACGTGCGGATCGGCGGACCGGATGGTCAGCTGCTGGTCAGCGCCGGGCTTCCCGC
GATGACGACGCTGCCGCCGCCCACGCCCGACATGGCCCAGGCCCTCGGATCGCTGATCGACCGCCCCATCATCCATGTAC
GGCGGCCGCTGCTGCTCGAGCGCAACGAAGTCGGCTTCCTCCAGTTCGGCGTTTCGGTCTCGGTGCTTGCCGCCGCGCGC
CAGGCCATCATCCAGCAGGGCACGCTGATCGCGCTCGCCGAAATCCTGCTCACCTTCATCCTGCTGTCCGGCATCGGCTA
CCTGCTCACCCACAATCTCGGCCGCCTGCTGGCGGGCAGCCGTGCGATCGCGGAAGGCCACCTTGATCACCGCCTGCCGG
AAAAGGGCGAGGACGAACTGGCCCGGCTCGCGCGCAACTTCAACGTGATGGCCGCGACCCTGCAGCAGCGGGTCGGCGAA
CTGCAACGTACGGCCCTGCAGCTGCGCACCAGCGAGGAACGCTACGCGCTGGCACTGCGTGGCGCCAACGACGGACTGTG
GGACTGGGATCTTCCGACCGGCCAGGTCTATTTCTCCGAACGCTTCTGCGAAATCGTGGGTCGCGACATGAGCGGCTTCA
GCAATGCGCAGGACGCGCTCGCGAGCTACCTGCATCCCGACGAGCTCGAAACCTACCGCGAGGTGATGCGTGCCCACCTG
CGCGGCGAGAGCGCGCAATTCATGCTGGAGCACCGCATCCGCCAGGGCGACGGCAAGGTGCGCTGGGTCATGACGCGCGG
CGTGGCGCAACGCGATGCCGGCGGTCGCGCTACCCGCATGGCCGGCTCGATCAGCGACATCGACCTGCGCAAGCGCGCCG
AGCAGCAGCTGGTGCACGACGCGCTGCACGACGGGCTCACGGGCCTGCCCAACCGCGCCCTCTTCATCGAGCACGTGCAG
CAGGCCCTTGGCCACCAGCGCCGCGACGAAAATGCGCGCTTTGCCGTCCTCGCAATCAACATCGAGCGCTTCAGCCTGAT
CAACGACAGCTTCGGCCACGCGGCGGGTGACGAGTTGCTGCGTCGCGTCGCCGAGCACATCGTCGCATCGATGCGGGCGG
GCGACGTCGCTGCGCGCGTCGGCGGCGACCAGTTCGCCCTGCTGCTCAATGGCATCGACGGCAGCACCGAGGCCTTGCGC
GTGGCCGAAAGCCTGGTCGAGCTGCCCGGCCTCAGCGCCCCCGCCGCCGGCCGGCCGCTGCACCTGCGCTGCCGCATCGG
GGTGGCGGTCAGCGACATCGAGCGCGATGACGCCGAGGCCTTGTTGCGCGACGCCGACAACGCGCTGCACAAGGCGCGCC
GCGATCAGGCCGACCCGGTCGAGTTCTTCCACGCCTCGATGCACACCCAGGCGGTCCGCGCGCTGCAGCTCGAAGCCGAC
CTGCGCACCGCGCTGCGCATCGGCGGCCTTACGGTGCACTACCAACCCATCGTCGCGCTCGGCGATCGCCGCCTGACGAG
CTTCGAAGCGCTGGTGCGCTGGCGCCACCCCACGCACGGCCTGCTCCCGCCGCTGGAGTTCATTCCGCTCGCCGAAACCC
TCGACCTGATCCACGACGTCGGCATGCGCGTGCTCACCCTGGTCTGCCGCGACCTGCTGGAATGGGGCATCGCTTATCCC
GGCCGGGCCTTGCCTTCGGTCAGCGTCAATCTGTCGGCACGGCAGCTGTCGCGGCCGAATCTGGCGGATGAACTGCTGGA
CGTGATCGAAAGCCACGGCGTGCCCATCTCCTGCCTGCGCTTCGAGGTCACCGAAAGCGTGCTCGCCGATCCGGACGGTC
CGGCGAAGCCGGTCCTGCATCAACTGCGCGAGGCCGGCGCGTCGGTGCTCATCGACGACTTCGGCACCGGCTACTCGGCA
CTCAGCTACCTGCACACCATCCCGTGCGACATCGTCAAACTCGACGGCACCTTCGTACGCTCCATCACCCAGGACAGCCG
CCTGCGCGACATCGTCCGGCGCAGCATCCAGCTCGCCCACGATCTCGGCATCGCGGTGGTCGCCGAATGCATCGAGCACG
AAGATCAGGCCTCGGTGCTGTATGGCATGGACTGCGACTACGGCCAGGGCTATCTCTATTCGCGCCCGCTGGAAGCGGAC
GACGCCCGCCGCTTGCTGGCGCCCTCAAACCCGGGCACTCCCCAATGA

Upstream 100 bases:

>100_bases
GCGCGACGGAAGCACGCGTGCCCCCCGCTCCCATCTTCCTCGCCGCCCGCGCCGATGCCCGGCCTCGCGTCCCGGCCGCC
GCATCCCCACGGAACTCATA

Downstream 100 bases:

>100_bases
AACCCGCCATTCCGATCCTTTGCCTGGCCCTGTTGCTGGGCCTCGCTCCCCCCGCCCGGGCCGATGCCCCCGAAATCCGC
TGGTCGGCCTTCGGCACCGT

Product: putative signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 815; Mature: 815

Protein sequence:

>815_residues
MRLPFRHSSIRFRLLLASTAVQVVLLTLLLANSVRLMNDAASASLATLTTQNASMLHAMATAYGEQGRYRTLQDVLGELL
TDSTEGLVYVRIGGPDGQLLVSAGLPAMTTLPPPTPDMAQALGSLIDRPIIHVRRPLLLERNEVGFLQFGVSVSVLAAAR
QAIIQQGTLIALAEILLTFILLSGIGYLLTHNLGRLLAGSRAIAEGHLDHRLPEKGEDELARLARNFNVMAATLQQRVGE
LQRTALQLRTSEERYALALRGANDGLWDWDLPTGQVYFSERFCEIVGRDMSGFSNAQDALASYLHPDELETYREVMRAHL
RGESAQFMLEHRIRQGDGKVRWVMTRGVAQRDAGGRATRMAGSISDIDLRKRAEQQLVHDALHDGLTGLPNRALFIEHVQ
QALGHQRRDENARFAVLAINIERFSLINDSFGHAAGDELLRRVAEHIVASMRAGDVAARVGGDQFALLLNGIDGSTEALR
VAESLVELPGLSAPAAGRPLHLRCRIGVAVSDIERDDAEALLRDADNALHKARRDQADPVEFFHASMHTQAVRALQLEAD
LRTALRIGGLTVHYQPIVALGDRRLTSFEALVRWRHPTHGLLPPLEFIPLAETLDLIHDVGMRVLTLVCRDLLEWGIAYP
GRALPSVSVNLSARQLSRPNLADELLDVIESHGVPISCLRFEVTESVLADPDGPAKPVLHQLREAGASVLIDDFGTGYSA
LSYLHTIPCDIVKLDGTFVRSITQDSRLRDIVRRSIQLAHDLGIAVVAECIEHEDQASVLYGMDCDYGQGYLYSRPLEAD
DARRLLAPSNPGTPQ

Sequences:

>Translated_815_residues
MRLPFRHSSIRFRLLLASTAVQVVLLTLLLANSVRLMNDAASASLATLTTQNASMLHAMATAYGEQGRYRTLQDVLGELL
TDSTEGLVYVRIGGPDGQLLVSAGLPAMTTLPPPTPDMAQALGSLIDRPIIHVRRPLLLERNEVGFLQFGVSVSVLAAAR
QAIIQQGTLIALAEILLTFILLSGIGYLLTHNLGRLLAGSRAIAEGHLDHRLPEKGEDELARLARNFNVMAATLQQRVGE
LQRTALQLRTSEERYALALRGANDGLWDWDLPTGQVYFSERFCEIVGRDMSGFSNAQDALASYLHPDELETYREVMRAHL
RGESAQFMLEHRIRQGDGKVRWVMTRGVAQRDAGGRATRMAGSISDIDLRKRAEQQLVHDALHDGLTGLPNRALFIEHVQ
QALGHQRRDENARFAVLAINIERFSLINDSFGHAAGDELLRRVAEHIVASMRAGDVAARVGGDQFALLLNGIDGSTEALR
VAESLVELPGLSAPAAGRPLHLRCRIGVAVSDIERDDAEALLRDADNALHKARRDQADPVEFFHASMHTQAVRALQLEAD
LRTALRIGGLTVHYQPIVALGDRRLTSFEALVRWRHPTHGLLPPLEFIPLAETLDLIHDVGMRVLTLVCRDLLEWGIAYP
GRALPSVSVNLSARQLSRPNLADELLDVIESHGVPISCLRFEVTESVLADPDGPAKPVLHQLREAGASVLIDDFGTGYSA
LSYLHTIPCDIVKLDGTFVRSITQDSRLRDIVRRSIQLAHDLGIAVVAECIEHEDQASVLYGMDCDYGQGYLYSRPLEAD
DARRLLAPSNPGTPQ
>Mature_815_residues
MRLPFRHSSIRFRLLLASTAVQVVLLTLLLANSVRLMNDAASASLATLTTQNASMLHAMATAYGEQGRYRTLQDVLGELL
TDSTEGLVYVRIGGPDGQLLVSAGLPAMTTLPPPTPDMAQALGSLIDRPIIHVRRPLLLERNEVGFLQFGVSVSVLAAAR
QAIIQQGTLIALAEILLTFILLSGIGYLLTHNLGRLLAGSRAIAEGHLDHRLPEKGEDELARLARNFNVMAATLQQRVGE
LQRTALQLRTSEERYALALRGANDGLWDWDLPTGQVYFSERFCEIVGRDMSGFSNAQDALASYLHPDELETYREVMRAHL
RGESAQFMLEHRIRQGDGKVRWVMTRGVAQRDAGGRATRMAGSISDIDLRKRAEQQLVHDALHDGLTGLPNRALFIEHVQ
QALGHQRRDENARFAVLAINIERFSLINDSFGHAAGDELLRRVAEHIVASMRAGDVAARVGGDQFALLLNGIDGSTEALR
VAESLVELPGLSAPAAGRPLHLRCRIGVAVSDIERDDAEALLRDADNALHKARRDQADPVEFFHASMHTQAVRALQLEAD
LRTALRIGGLTVHYQPIVALGDRRLTSFEALVRWRHPTHGLLPPLEFIPLAETLDLIHDVGMRVLTLVCRDLLEWGIAYP
GRALPSVSVNLSARQLSRPNLADELLDVIESHGVPISCLRFEVTESVLADPDGPAKPVLHQLREAGASVLIDDFGTGYSA
LSYLHTIPCDIVKLDGTFVRSITQDSRLRDIVRRSIQLAHDLGIAVVAECIEHEDQASVLYGMDCDYGQGYLYSRPLEAD
DARRLLAPSNPGTPQ

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=536, Percent_Identity=31.7164179104478, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=29.4930875576037, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI226510982, Length=437, Percent_Identity=29.2906178489703, Blast_Score=159, Evalue=8e-40,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=34.8360655737705, Blast_Score=142, Evalue=7e-35,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=34.5991561181435, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1787055, Length=238, Percent_Identity=31.9327731092437, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI87081845, Length=249, Percent_Identity=32.5301204819277, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI1786507, Length=232, Percent_Identity=32.3275862068966, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788502, Length=256, Percent_Identity=31.25, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI87082096, Length=249, Percent_Identity=30.5220883534137, Blast_Score=104, Evalue=3e-23,
Organism=Escherichia coli, GI1788849, Length=249, Percent_Identity=29.3172690763052, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87081980, Length=238, Percent_Identity=31.0924369747899, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87081881, Length=224, Percent_Identity=31.25, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=182, Percent_Identity=35.1648351648352, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788381, Length=171, Percent_Identity=31.5789473684211, Blast_Score=84, Evalue=5e-17,
Organism=Escherichia coli, GI1787262, Length=203, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1788956, Length=179, Percent_Identity=30.7262569832402, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1786584, Length=154, Percent_Identity=33.1168831168831, Blast_Score=79, Evalue=2e-15,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=36.144578313253, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788085, Length=206, Percent_Identity=27.1844660194175, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI87081977, Length=187, Percent_Identity=28.8770053475936, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 89478; Mature: 89478

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPFRHSSIRFRLLLASTAVQVVLLTLLLANSVRLMNDAASASLATLTTQNASMLHAMA
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEECCCHHHHHHHH
TAYGEQGRYRTLQDVLGELLTDSTEGLVYVRIGGPDGQLLVSAGLPAMTTLPPPTPDMAQ
HHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHH
ALGSLIDRPIIHVRRPLLLERNEVGFLQFGVSVSVLAAARQAIIQQGTLIALAEILLTFI
HHHHHHCCCHHHHCCCHHCCCCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LLSGIGYLLTHNLGRLLAGSRAIAEGHLDHRLPEKGEDELARLARNFNVMAATLQQRVGE
HHHHHHHHHHHHHHHHHHCCHHHHHCCHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
LQRTALQLRTSEERYALALRGANDGLWDWDLPTGQVYFSERFCEIVGRDMSGFSNAQDAL
HHHHHHHHHCCCCEEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH
ASYLHPDELETYREVMRAHLRGESAQFMLEHRIRQGDGKVRWVMTRGVAQRDAGGRATRM
HHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCHHHH
AGSISDIDLRKRAEQQLVHDALHDGLTGLPNRALFIEHVQQALGHQRRDENARFAVLAIN
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEE
IERFSLINDSFGHAAGDELLRRVAEHIVASMRAGDVAARVGGDQFALLLNGIDGSTEALR
EHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEECCCCCHHHHH
VAESLVELPGLSAPAAGRPLHLRCRIGVAVSDIERDDAEALLRDADNALHKARRDQADPV
HHHHHHHCCCCCCCCCCCCEEEEEEECCEEHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
EFFHASMHTQAVRALQLEADLRTALRIGGLTVHYQPIVALGDRRLTSFEALVRWRHPTHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHEEECCCHHHHHHHHHHHCCCCCC
LLPPLEFIPLAETLDLIHDVGMRVLTLVCRDLLEWGIAYPGRALPSVSVNLSARQLSRPN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHCCCCC
LADELLDVIESHGVPISCLRFEVTESVLADPDGPAKPVLHQLREAGASVLIDDFGTGYSA
HHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHH
LSYLHTIPCDIVKLDGTFVRSITQDSRLRDIVRRSIQLAHDLGIAVVAECIEHEDQASVL
HHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
YGMDCDYGQGYLYSRPLEADDARRLLAPSNPGTPQ
EECCCCCCCCCEECCCCCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure
MRLPFRHSSIRFRLLLASTAVQVVLLTLLLANSVRLMNDAASASLATLTTQNASMLHAMA
CCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEECCCHHHHHHHH
TAYGEQGRYRTLQDVLGELLTDSTEGLVYVRIGGPDGQLLVSAGLPAMTTLPPPTPDMAQ
HHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHH
ALGSLIDRPIIHVRRPLLLERNEVGFLQFGVSVSVLAAARQAIIQQGTLIALAEILLTFI
HHHHHHCCCHHHHCCCHHCCCCCCCEEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LLSGIGYLLTHNLGRLLAGSRAIAEGHLDHRLPEKGEDELARLARNFNVMAATLQQRVGE
HHHHHHHHHHHHHHHHHHCCHHHHHCCHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
LQRTALQLRTSEERYALALRGANDGLWDWDLPTGQVYFSERFCEIVGRDMSGFSNAQDAL
HHHHHHHHHCCCCEEEEEEECCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHH
ASYLHPDELETYREVMRAHLRGESAQFMLEHRIRQGDGKVRWVMTRGVAQRDAGGRATRM
HHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCCHHHH
AGSISDIDLRKRAEQQLVHDALHDGLTGLPNRALFIEHVQQALGHQRRDENARFAVLAIN
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEE
IERFSLINDSFGHAAGDELLRRVAEHIVASMRAGDVAARVGGDQFALLLNGIDGSTEALR
EHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEEEECCCCCHHHHH
VAESLVELPGLSAPAAGRPLHLRCRIGVAVSDIERDDAEALLRDADNALHKARRDQADPV
HHHHHHHCCCCCCCCCCCCEEEEEEECCEEHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
EFFHASMHTQAVRALQLEADLRTALRIGGLTVHYQPIVALGDRRLTSFEALVRWRHPTHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECHHEEECCCHHHHHHHHHHHCCCCCC
LLPPLEFIPLAETLDLIHDVGMRVLTLVCRDLLEWGIAYPGRALPSVSVNLSARQLSRPN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHCCCCC
LADELLDVIESHGVPISCLRFEVTESVLADPDGPAKPVLHQLREAGASVLIDDFGTGYSA
HHHHHHHHHHHCCCCEEEHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHH
LSYLHTIPCDIVKLDGTFVRSITQDSRLRDIVRRSIQLAHDLGIAVVAECIEHEDQASVL
HHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
YGMDCDYGQGYLYSRPLEADDARRLLAPSNPGTPQ
EECCCCCCCCCEECCCCCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]