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The map label for this gene is tlyA [H]

Identifier: 119896876

GI number: 119896876

Start: 616561

End: 617238

Strand: Reverse

Name: tlyA [H]

Synonym: azo0585

Alternate gene names: 119896876

Gene position: 617238-616561 (Counterclockwise)

Preceding gene: 119896877

Following gene: 119896875

Centisome position: 14.1

GC content: 70.06

Gene sequence:

>678_bases
GTGCAATGGAACGGGCAGATTCTCAAGAAGGCTTCCCACAGCCTGCCCATCGACGCGACCATCGAACTGGTGGCTGACCC
GGACGACGCCTTCGAGCGCTACGTCTCCCGCGGCGGACTCAAGCTCGCCGGCGCGCTCGCGGCGAGCGGGCTGGACCCGG
CGGGGCGCGTCTGCCTCGACGTCGGCCAATCCACCGGCGGTTTCACCGATTGCCTGCTGCAGGCCGGCGCCACCAGGGTG
GTCGGGGTCGAGGTCGGCCACGGCCAGCTGCATCCGCGCCTGGCCGGCGAGCCGCGCTGCATCACGCTGGAAGGCGTCAA
TGCGCGTCACCTGACGGCGGCGGATCTGGCCGGGCACTGCCCGCCGGGCGGTTTCGGCCTGATCGTCTGCGACGCCAGCT
TCATCTCGCTGACGCTGCTGCTGCCGCAGTGGCCGGCGCTGCTTGCAGCCGACGGCGACATCCTCGCGTTGGTCAAGCCG
CAGTTCGAGGTCGGCCCGCAAGGGCTTTCCAAGGGCGGCATCGTGCGCGACGCCTCGCGCTACGCCGAGGTCGAGCGCAA
GCTGCGCATCGCCGCCGCGGCTGCAGCGCTGGACGTGCGCGGCTGGTACGACTCGCCCATCACCGGCACCGACGGCAACC
GCGAATTCTTCATCTGGATGCGACATGCACAAGACTGA

Upstream 100 bases:

>100_bases
GGGCACTGCGCGCAGCGGAACACGGTTGGATCAGCGCCTGGTGGAACTCGGGCTTGCTCCCTCTCGAGCCGTAGCCCAAC
GGCTGATCGAGGCCGGGCGA

Downstream 100 bases:

>100_bases
ACTTTCCATCGAATTCTTCCCGCCGCAGACGGCCGAGGGCGCAGAGAAGCTGCGCGCGGTGCAGGCCCGGCTCGCCGAGC
TGAAGCCCACCTTCTTCTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MQWNGQILKKASHSLPIDATIELVADPDDAFERYVSRGGLKLAGALAASGLDPAGRVCLDVGQSTGGFTDCLLQAGATRV
VGVEVGHGQLHPRLAGEPRCITLEGVNARHLTAADLAGHCPPGGFGLIVCDASFISLTLLLPQWPALLAADGDILALVKP
QFEVGPQGLSKGGIVRDASRYAEVERKLRIAAAAAALDVRGWYDSPITGTDGNREFFIWMRHAQD

Sequences:

>Translated_225_residues
MQWNGQILKKASHSLPIDATIELVADPDDAFERYVSRGGLKLAGALAASGLDPAGRVCLDVGQSTGGFTDCLLQAGATRV
VGVEVGHGQLHPRLAGEPRCITLEGVNARHLTAADLAGHCPPGGFGLIVCDASFISLTLLLPQWPALLAADGDILALVKP
QFEVGPQGLSKGGIVRDASRYAEVERKLRIAAAAAALDVRGWYDSPITGTDGNREFFIWMRHAQD
>Mature_225_residues
MQWNGQILKKASHSLPIDATIELVADPDDAFERYVSRGGLKLAGALAASGLDPAGRVCLDVGQSTGGFTDCLLQAGATRV
VGVEVGHGQLHPRLAGEPRCITLEGVNARHLTAADLAGHCPPGGFGLIVCDASFISLTLLLPQWPALLAADGDILALVKP
QFEVGPQGLSKGGIVRDASRYAEVERKLRIAAAAAALDVRGWYDSPITGTDGNREFFIWMRHAQD

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 23744; Mature: 23744

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWNGQILKKASHSLPIDATIELVADPDDAFERYVSRGGLKLAGALAASGLDPAGRVCLD
CCCCHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEHHHHHCCCCCCHHEEEE
VGQSTGGFTDCLLQAGATRVVGVEVGHGQLHPRLAGEPRCITLEGVNARHLTAADLAGHC
CCCCCCCHHHHHHHCCCCEEEEEEECCCEECCCCCCCCCEEEEECCCCCEEEHHHHCCCC
PPGGFGLIVCDASFISLTLLLPQWPALLAADGDILALVKPQFEVGPQGLSKGGIVRDASR
CCCCCEEEEECCCHHEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCEEECHHH
YAEVERKLRIAAAAAALDVRGWYDSPITGTDGNREFFIWMRHAQD
HHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MQWNGQILKKASHSLPIDATIELVADPDDAFERYVSRGGLKLAGALAASGLDPAGRVCLD
CCCCHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEHHHHHCCCCCCHHEEEE
VGQSTGGFTDCLLQAGATRVVGVEVGHGQLHPRLAGEPRCITLEGVNARHLTAADLAGHC
CCCCCCCHHHHHHHCCCCEEEEEEECCCEECCCCCCCCCEEEEECCCCCEEEHHHHCCCC
PPGGFGLIVCDASFISLTLLLPQWPALLAADGDILALVKPQFEVGPQGLSKGGIVRDASR
CCCCCEEEEECCCHHEEEECCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCEEECHHH
YAEVERKLRIAAAAAALDVRGWYDSPITGTDGNREFFIWMRHAQD
HHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]