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The map label for this gene is ydeR [H]

Identifier: 119896873

GI number: 119896873

Start: 613443

End: 614654

Strand: Reverse

Name: ydeR [H]

Synonym: azo0582

Alternate gene names: 119896873

Gene position: 614654-613443 (Counterclockwise)

Preceding gene: 119896875

Following gene: 119896872

Centisome position: 14.05

GC content: 74.09

Gene sequence:

>1212_bases
ATGATGTCCAACATTCAGGCTGCGCATGCAGCCTTCGTTCCCGCCGAGGCGGGGCCACGTCCGGCGCTCGTACTGCTGCT
CGCGGCCGGCGCCGGGCTCAGCGTCGCCTCGATCTACTACAGCCAGCCGATGCTCGGCGTGCTCGCCGGCGACCTCGGCG
CCGACGCCGCGCGCGTCGGCCTGATTCCCACGCTGACCCAGCTCGGCTACGCCTGCGGCATCCTGCTGCTGGCGCCGCTC
GGCGACCGCCACGACCGCCGCGGCATCATCGCCCTCAAGGCCGCGCTGCTCGCCCTCGCACTGCTGGCCAGCGGCCTCGC
CCCCGGCGTCGGCCTGCTGCTCGCCGCCAGCCTTGGCGTCGGTCTCGCGGCCACGCTGGCGCAGGACATCGTGCCGGCCG
CGGCGGCGCTGGCGCCGGAGCGGCAGCGCGGCCGCATCGTCGGCACGGTGATGACCGGACTGCTGCTCGGCATCCTGCTG
TCGCGGGTGGTCAGCGGCTTCGTCGCCGAGCAGTTCGGCTGGCGCACGATGTACTTCATCGCCGCCTTCGCGGTCGCCGC
GATCGGCGTGGTGGCCTGGCGCGGCATCCCGCACATCCCACCCACCACGCGGGCGAGCTACCTTGCGCTGCTCGGCTCGC
TGCGCGGGTTGTGGATGGCGCATCCGGCGCTGCGCCGCGCGGCCCTCGCGCAGGGACTGCTGTCGGTAGGCTTCAGCGCC
TTCTGGTCCACCCTGGCGGTGATGCTGCACGACAGCTTCCAGCTCGGCAGCGCCGCGGCGGGCGCCTTCGGCCTGGCCGG
CGCGGCGGGTGCGCTGGCGGCGCCGCTCGCCGGCCGCCTTGCCGACCGTCGCGGCCCCCAGCCGGTGACCGTGCTCGGCG
CGGCCCTGGCACTGCTGGCGTTCGCAGCGATGTGGCTGGCCCCGCTGCTGCCGCCTTCGGCCCGGCTCGGTCTGATCGTG
GCGAGCGCAATCGGCTTCGACTTCGGCATCCAGGCCGCGCTGGTCGCCCACCAGAGCATCGTCTACAGCCTGGACGCCGG
CGCGCGCAGCCGCATCAATGCGCTGCTGATCACAACCATGTTCGTCGGCATGGCGGCGGGCTCGTCGCTCGGCAGCCTGG
CGCTGGCCCACGCGGGCTGGAACGGCGTAATCGGCGTGGCGGTCGCCGCCAGTGCGGTTGCGCTTGCACTTCGCCTCGGT
GCGCGGCGCTGA

Upstream 100 bases:

>100_bases
TCATGCGTCAAACGTATAACAGTCCTGCATCTCCCGCCACTACAAACCCGCATCGTCAAAAGGAAGAATTCATCCGTCGC
CCCACACCCCGGAGTTTTCC

Downstream 100 bases:

>100_bases
CCCGGCCTCAGCGCGGCATCAGCATATTGAAACCCGCCCCGGCGCCCGCAGCCGCCGCCGGGGCGTAAGATGCTGCAACG
CACCATCCGAGCACCGCAAA

Product: major facilitator superfamily permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MMSNIQAAHAAFVPAEAGPRPALVLLLAAGAGLSVASIYYSQPMLGVLAGDLGADAARVGLIPTLTQLGYACGILLLAPL
GDRHDRRGIIALKAALLALALLASGLAPGVGLLLAASLGVGLAATLAQDIVPAAAALAPERQRGRIVGTVMTGLLLGILL
SRVVSGFVAEQFGWRTMYFIAAFAVAAIGVVAWRGIPHIPPTTRASYLALLGSLRGLWMAHPALRRAALAQGLLSVGFSA
FWSTLAVMLHDSFQLGSAAAGAFGLAGAAGALAAPLAGRLADRRGPQPVTVLGAALALLAFAAMWLAPLLPPSARLGLIV
ASAIGFDFGIQAALVAHQSIVYSLDAGARSRINALLITTMFVGMAAGSSLGSLALAHAGWNGVIGVAVAASAVALALRLG
ARR

Sequences:

>Translated_403_residues
MMSNIQAAHAAFVPAEAGPRPALVLLLAAGAGLSVASIYYSQPMLGVLAGDLGADAARVGLIPTLTQLGYACGILLLAPL
GDRHDRRGIIALKAALLALALLASGLAPGVGLLLAASLGVGLAATLAQDIVPAAAALAPERQRGRIVGTVMTGLLLGILL
SRVVSGFVAEQFGWRTMYFIAAFAVAAIGVVAWRGIPHIPPTTRASYLALLGSLRGLWMAHPALRRAALAQGLLSVGFSA
FWSTLAVMLHDSFQLGSAAAGAFGLAGAAGALAAPLAGRLADRRGPQPVTVLGAALALLAFAAMWLAPLLPPSARLGLIV
ASAIGFDFGIQAALVAHQSIVYSLDAGARSRINALLITTMFVGMAAGSSLGSLALAHAGWNGVIGVAVAASAVALALRLG
ARR
>Mature_403_residues
MMSNIQAAHAAFVPAEAGPRPALVLLLAAGAGLSVASIYYSQPMLGVLAGDLGADAARVGLIPTLTQLGYACGILLLAPL
GDRHDRRGIIALKAALLALALLASGLAPGVGLLLAASLGVGLAATLAQDIVPAAAALAPERQRGRIVGTVMTGLLLGILL
SRVVSGFVAEQFGWRTMYFIAAFAVAAIGVVAWRGIPHIPPTTRASYLALLGSLRGLWMAHPALRRAALAQGLLSVGFSA
FWSTLAVMLHDSFQLGSAAAGAFGLAGAAGALAAPLAGRLADRRGPQPVTVLGAALALLAFAAMWLAPLLPPSARLGLIV
ASAIGFDFGIQAALVAHQSIVYSLDAGARSRINALLITTMFVGMAAGSSLGSLALAHAGWNGVIGVAVAASAVALALRLG
ARR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=410, Percent_Identity=25.8536585365854, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40529; Mature: 40529

Theoretical pI: Translated: 11.83; Mature: 11.83

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSNIQAAHAAFVPAEAGPRPALVLLLAAGAGLSVASIYYSQPMLGVLAGDLGADAARVG
CCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHH
LIPTLTQLGYACGILLLAPLGDRHDRRGIIALKAALLALALLASGLAPGVGLLLAASLGV
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GLAATLAQDIVPAAAALAPERQRGRIVGTVMTGLLLGILLSRVVSGFVAEQFGWRTMYFI
HHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
AAFAVAAIGVVAWRGIPHIPPTTRASYLALLGSLRGLWMAHPALRRAALAQGLLSVGFSA
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FWSTLAVMLHDSFQLGSAAAGAFGLAGAAGALAAPLAGRLADRRGPQPVTVLGAALALLA
HHHHHHHHHHCCHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
FAAMWLAPLLPPSARLGLIVASAIGFDFGIQAALVAHQSIVYSLDAGARSRINALLITTM
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHH
FVGMAAGSSLGSLALAHAGWNGVIGVAVAASAVALALRLGARR
HHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MMSNIQAAHAAFVPAEAGPRPALVLLLAAGAGLSVASIYYSQPMLGVLAGDLGADAARVG
CCCCCCHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCCHHHHHHCCCCCCHHHHH
LIPTLTQLGYACGILLLAPLGDRHDRRGIIALKAALLALALLASGLAPGVGLLLAASLGV
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
GLAATLAQDIVPAAAALAPERQRGRIVGTVMTGLLLGILLSRVVSGFVAEQFGWRTMYFI
HHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
AAFAVAAIGVVAWRGIPHIPPTTRASYLALLGSLRGLWMAHPALRRAALAQGLLSVGFSA
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FWSTLAVMLHDSFQLGSAAAGAFGLAGAAGALAAPLAGRLADRRGPQPVTVLGAALALLA
HHHHHHHHHHCCHHCCCHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
FAAMWLAPLLPPSARLGLIVASAIGFDFGIQAALVAHQSIVYSLDAGARSRINALLITTM
HHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHH
FVGMAAGSSLGSLALAHAGWNGVIGVAVAASAVALALRLGARR
HHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]