Click here to switch to the map view.

The map label for this gene is yjdF [H]

Identifier: 119896824

GI number: 119896824

Start: 566665

End: 567276

Strand: Reverse

Name: yjdF [H]

Synonym: azo0533

Alternate gene names: 119896824

Gene position: 567276-566665 (Counterclockwise)

Preceding gene: 119896825

Following gene: 119896823

Centisome position: 12.96

GC content: 71.24

Gene sequence:

>612_bases
ATGCGCCTTGGCCTGTTGATCCTCGTGCTCGCCGCGCTGGTTGCGTCCGGCGTCGCGCCCTACGACCGCGGCGTGTGGCT
GGCGGAGGTGGCGCCGGTGCTGATCGCGCTGCCCGTCCTGCTGATCAGCGCGCGCCGTTTCCCGCTGACACCGCTGACCT
GCGGCCTGGTCGCGTTCTTCGCGCTGATCCTGATCGGCGGCGGCGCCTACACCTACGCACGGGTGCCGATCGGCTTCGAG
GTGCAGGAGATGTTCGGCCTCGCGCGCAATCCCTACGACCGCTTCGGCCACTTCTTCCAGGGGGTCACGCCCGCCATCCT
CGGGCGCGAGCTGCTGCTGCGCACCTCGCCGCTGCGTCCGGGGAAATGGCTGTTCGCGCTGCTGCTGCTCGCCTGCCTCG
GCATCAGCGCCGCCTACGAGCTGGTGGAATGGGCCGCCGCGGTGTGGTGGGGTGACGGTTCGGTCGAATTCCTCGGCACC
CAGGGCGATCCGTGGGACGCGCAGTGGGACATGTTCATGGCGCTGCTCGGCGCCGGCAGCGCGCAGTTGGCGCTCGGCCG
CGTGCACGACCGCCAGCTCGCCGCGCTCATGCTTCCGCCACGCGGCCGCTGA

Upstream 100 bases:

>100_bases
AGCGTGCGGCTCTGCGTCCACCGCGCCGCGCCACCGCTCGCGGCATGACGGACGAAGATCACCGCCCGCCGCATGACCCG
CTCGCCCGCTGGAGTCTTCG

Downstream 100 bases:

>100_bases
ACCGCGCGGGGCGCCGCGTTGCCGGCGTCGACAATTCTGATGACAAATTGGCGGAAATCTTTCCGCCCTGGGCGGCGTCG
AACCTGCGTGCCCGTCCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MRLGLLILVLAALVASGVAPYDRGVWLAEVAPVLIALPVLLISARRFPLTPLTCGLVAFFALILIGGGAYTYARVPIGFE
VQEMFGLARNPYDRFGHFFQGVTPAILGRELLLRTSPLRPGKWLFALLLLACLGISAAYELVEWAAAVWWGDGSVEFLGT
QGDPWDAQWDMFMALLGAGSAQLALGRVHDRQLAALMLPPRGR

Sequences:

>Translated_203_residues
MRLGLLILVLAALVASGVAPYDRGVWLAEVAPVLIALPVLLISARRFPLTPLTCGLVAFFALILIGGGAYTYARVPIGFE
VQEMFGLARNPYDRFGHFFQGVTPAILGRELLLRTSPLRPGKWLFALLLLACLGISAAYELVEWAAAVWWGDGSVEFLGT
QGDPWDAQWDMFMALLGAGSAQLALGRVHDRQLAALMLPPRGR
>Mature_203_residues
MRLGLLILVLAALVASGVAPYDRGVWLAEVAPVLIALPVLLISARRFPLTPLTCGLVAFFALILIGGGAYTYARVPIGFE
VQEMFGLARNPYDRFGHFFQGVTPAILGRELLLRTSPLRPGKWLFALLLLACLGISAAYELVEWAAAVWWGDGSVEFLGT
QGDPWDAQWDMFMALLGAGSAQLALGRVHDRQLAALMLPPRGR

Specific function: Unknown

COG id: COG3647

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790562, Length=181, Percent_Identity=53.5911602209945, Blast_Score=198, Evalue=3e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014509 [H]

Pfam domain/function: PF09997 DUF2238 [H]

EC number: NA

Molecular weight: Translated: 22016; Mature: 22016

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGLLILVLAALVASGVAPYDRGVWLAEVAPVLIALPVLLISARRFPLTPLTCGLVAFF
CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ALILIGGGAYTYARVPIGFEVQEMFGLARNPYDRFGHFFQGVTPAILGRELLLRTSPLRP
HHHHHCCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
GKWLFALLLLACLGISAAYELVEWAAAVWWGDGSVEFLGTQGDPWDAQWDMFMALLGAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCHHHHHHHHHHCCCC
AQLALGRVHDRQLAALMLPPRGR
HHHHHHHHHHHHHHHEECCCCCC
>Mature Secondary Structure
MRLGLLILVLAALVASGVAPYDRGVWLAEVAPVLIALPVLLISARRFPLTPLTCGLVAFF
CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ALILIGGGAYTYARVPIGFEVQEMFGLARNPYDRFGHFFQGVTPAILGRELLLRTSPLRP
HHHHHCCCCCEEEECCCCCCHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
GKWLFALLLLACLGISAAYELVEWAAAVWWGDGSVEFLGTQGDPWDAQWDMFMALLGAGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCHHHHHHHHHHCCCC
AQLALGRVHDRQLAALMLPPRGR
HHHHHHHHHHHHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2656658 [H]