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The map label for this gene is ygaD1 [H]

Identifier: 119896799

GI number: 119896799

Start: 545130

End: 545615

Strand: Reverse

Name: ygaD1 [H]

Synonym: azo0508

Alternate gene names: 119896799

Gene position: 545615-545130 (Counterclockwise)

Preceding gene: 119896800

Following gene: 119896798

Centisome position: 12.47

GC content: 72.63

Gene sequence:

>486_bases
ATGGATACCGAACTCGCCACGCTGTCCCGTCAGGTGGGCGACGCCCTCGCCCGCCGCGGCTGGCTGCTCGCCACCGCCGA
ATCCTGCACCGGCGGCTGGATCGCCGAGGTCGTGACCGCCACCGCCGGCAGCTCCGCCTGGTTCGACCGCGGCTTCGTCA
CCTATTCCAACGTGGCGAAGACCGAGATGCTCGGCGTCAGCGCCGCCACGCTCGGCAGCGCCGGCGCGGTCAGCATTGCC
ACCGTGGGGGAAATGGCCCAGGGCGCACAGGCACGCAGCGCGGCACAGATCGCGGTGGCGGTTTCGGGCGTGGCAGGCCC
GACGGGCGGCAGCGCGGAGAAACCCGTCGGCATGGTGTGCCTGGCCTGGGCGTGGGGCGACGGCCAGCTCGACGCGGAAA
CCTGCCACTTCGCCGGCGACCGCGAAGCGGTGCGCCGCCAGACCGTGATTCGCGCGCTCGAAGGCGTGCTCGTGCGTTGC
GGCTGA

Upstream 100 bases:

>100_bases
GCTTCAAGGGCGGTTTCGGCGTCATGCTCGACGACCTGATCGCGGCCGGCTATACCTTGCTGGTGCTGGCGGCGCTCGTC
CGTCTGCTGGGGGCCTGATC

Downstream 100 bases:

>100_bases
GCCGCGACGGATTGCTGTATTTTTATTCAGGCAATAGACTGTCGCCGCCGTGACATCCGCCCAAGGGCTGTCACATTACA
GCAAGCTCTGTGCCATAATC

Product: CinA-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MDTELATLSRQVGDALARRGWLLATAESCTGGWIAEVVTATAGSSAWFDRGFVTYSNVAKTEMLGVSAATLGSAGAVSIA
TVGEMAQGAQARSAAQIAVAVSGVAGPTGGSAEKPVGMVCLAWAWGDGQLDAETCHFAGDREAVRRQTVIRALEGVLVRC
G

Sequences:

>Translated_161_residues
MDTELATLSRQVGDALARRGWLLATAESCTGGWIAEVVTATAGSSAWFDRGFVTYSNVAKTEMLGVSAATLGSAGAVSIA
TVGEMAQGAQARSAAQIAVAVSGVAGPTGGSAEKPVGMVCLAWAWGDGQLDAETCHFAGDREAVRRQTVIRALEGVLVRC
G
>Mature_161_residues
MDTELATLSRQVGDALARRGWLLATAESCTGGWIAEVVTATAGSSAWFDRGFVTYSNVAKTEMLGVSAATLGSAGAVSIA
TVGEMAQGAQARSAAQIAVAVSGVAGPTGGSAEKPVGMVCLAWAWGDGQLDAETCHFAGDREAVRRQTVIRALEGVLVRC
G

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=153, Percent_Identity=56.8627450980392, Blast_Score=156, Evalue=6e-40,
Organism=Escherichia coli, GI1787818, Length=122, Percent_Identity=41.8032786885246, Blast_Score=86, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 16362; Mature: 16362

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTELATLSRQVGDALARRGWLLATAESCTGGWIAEVVTATAGSSAWFDRGFVTYSNVAK
CCCHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCCHHCCCCEEECCHHH
TEMLGVSAATLGSAGAVSIATVGEMAQGAQARSAAQIAVAVSGVAGPTGGSAEKPVGMVC
HHHHCCHHHHCCCCCCCHHHHHHHHHCCCHHHHHHEEEEEEECCCCCCCCCCCCCCCEEE
LAWAWGDGQLDAETCHFAGDREAVRRQTVIRALEGVLVRCG
EEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MDTELATLSRQVGDALARRGWLLATAESCTGGWIAEVVTATAGSSAWFDRGFVTYSNVAK
CCCHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCCHHCCCCEEECCHHH
TEMLGVSAATLGSAGAVSIATVGEMAQGAQARSAAQIAVAVSGVAGPTGGSAEKPVGMVC
HHHHCCHHHHCCCCCCCHHHHHHHHHCCCHHHHHHEEEEEEECCCCCCCCCCCCCCCEEE
LAWAWGDGQLDAETCHFAGDREAVRRQTVIRALEGVLVRCG
EEEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]