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The map label for this gene is tdcF [C]

Identifier: 119896767

GI number: 119896767

Start: 512981

End: 513361

Strand: Direct

Name: tdcF [C]

Synonym: azo0476

Alternate gene names: 119896767

Gene position: 512981-513361 (Clockwise)

Preceding gene: 119896766

Following gene: 119896768

Centisome position: 11.72

GC content: 67.19

Gene sequence:

>381_bases
ATGAGCCGCAGCATCGTTTCCACCCCCAATGCGCCCGCCGCGATCGGTACCTACTCGCAGGCCGTAAAGGCCGGCGGCAC
GGTTTACCTGTCCGGCCAGATCGGTCTCGACCCGGCCACCATGCAGCTGGTGGACGGCTTCGAGGCGCAGACCGTGCGCG
TGTTCGAAAACCTGAAGGCGGTGGCCGAAGCCGCGGGCGGCTCGCTCGCCGACGTGGTCAAGCTCACCATCTATCTCACC
GACCTCGCCAACTTCGCCAAGGTGAACGAGATCATGGCGCGCTATTTCGCCGAGCCCTATCCGGCGCGCGCCGCGGTCGG
CGTCAAGGAGTTGCCCAAGGGCGCGGTGGTCGAGGCCGACGCCATCCTGGTGCTCGGCTGA

Upstream 100 bases:

>100_bases
AAATCCGCCGCCCGCCCGGCCGCACGCCATGCGCATGGCGGCGGCGGGCGGCGCGCGCCGGTTTACAATGCGGCTCTCAG
ACCCATCCGAGGAAGACTCC

Downstream 100 bases:

>100_bases
GCGCCACGTGCAGTCGGGCTGGGCGGGACTGGGCGAGCAGCTCGCCTCGCGCCTGCGCAAGCTGGACCTGCACCGGCAGG
AGGACCTCGTCGTCCACCTG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSRSIVSTPNAPAAIGTYSQAVKAGGTVYLSGQIGLDPATMQLVDGFEAQTVRVFENLKAVAEAAGGSLADVVKLTIYLT
DLANFAKVNEIMARYFAEPYPARAAVGVKELPKGAVVEADAILVLG

Sequences:

>Translated_126_residues
MSRSIVSTPNAPAAIGTYSQAVKAGGTVYLSGQIGLDPATMQLVDGFEAQTVRVFENLKAVAEAAGGSLADVVKLTIYLT
DLANFAKVNEIMARYFAEPYPARAAVGVKELPKGAVVEADAILVLG
>Mature_125_residues
SRSIVSTPNAPAAIGTYSQAVKAGGTVYLSGQIGLDPATMQLVDGFEAQTVRVFENLKAVAEAAGGSLADVVKLTIYLTD
LANFAKVNEIMARYFAEPYPARAAVGVKELPKGAVVEADAILVLG

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=125, Percent_Identity=45.6, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=40.8, Blast_Score=98, Evalue=2e-22,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=42.5196850393701, Blast_Score=95, Evalue=1e-21,
Organism=Escherichia coli, GI1787245, Length=119, Percent_Identity=34.453781512605, Blast_Score=72, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=126, Percent_Identity=51.5873015873016, Blast_Score=131, Evalue=9e-32,
Organism=Caenorhabditis elegans, GI71982075, Length=126, Percent_Identity=51.5873015873016, Blast_Score=131, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI71982068, Length=126, Percent_Identity=51.5873015873016, Blast_Score=131, Evalue=1e-31,
Organism=Saccharomyces cerevisiae, GI6322138, Length=119, Percent_Identity=38.655462184874, Blast_Score=91, Evalue=8e-20,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=41.1764705882353, Blast_Score=75, Evalue=3e-15,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=43.2, Blast_Score=99, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13073; Mature: 12942

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSIVSTPNAPAAIGTYSQAVKAGGTVYLSGQIGLDPATMQLVDGFEAQTVRVFENLKA
CCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHH
VAEAAGGSLADVVKLTIYLTDLANFAKVNEIMARYFAEPYPARAAVGVKELPKGAVVEAD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHCCCCCEEECC
AILVLG
EEEEEC
>Mature Secondary Structure 
SRSIVSTPNAPAAIGTYSQAVKAGGTVYLSGQIGLDPATMQLVDGFEAQTVRVFENLKA
CCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCHHHHHHHHHHHH
VAEAAGGSLADVVKLTIYLTDLANFAKVNEIMARYFAEPYPARAAVGVKELPKGAVVEAD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCHHHCCCCCEEECC
AILVLG
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]