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The map label for this gene is ygcF [C]

Identifier: 119896705

GI number: 119896705

Start: 440170

End: 440832

Strand: Reverse

Name: ygcF [C]

Synonym: azo0414

Alternate gene names: 119896705

Gene position: 440832-440170 (Counterclockwise)

Preceding gene: 119896706

Following gene: 119896704

Centisome position: 10.07

GC content: 68.33

Gene sequence:

>663_bases
ATGACCGAAGTAGTCCGCCAGCCGGTGAAGCTGCGGCTGACGGAAATCTTCGCCTCCATCCAGGGCGAATCGACCCGCGT
CGGCCTGCCGACCACCTTCGTCCGCCTCACCGGCTGCCCGCTGCGCTGCAGCTGGTGCGATACCGCCTACGCCTTCACCG
GCGGCGAAGCGCGCGCGCTGAGCGACGTCCTGGACGATGTCGCCGCGCTCGGACTGCGGCACGTCTGCGTCACCGGCGGC
GAGCCGCTGGCGCAGAAGTACTGTCTCGCGCTGCTTACGGCACTGTGCGATGCCGGCTATTCGGTGTCGCTGGAAACCAG
TGGCGCGCTCGATATCGGTGGGGTCGACCCCCGCGTTTCGCGCGTGATGGACCTGAAAGCACCCGGCTCGGCCGAGGTGA
CGCGCAACCGGCTGGAGAACATCCCGCTGCTGCGGGCAAGGGACGAACTCAAGATCGTGCTCGCCGACCAAGCCGATTAC
GACTGGGCGCGCGCGATGATCGCGGACCACGACCTCGCCGCGCGCTGTCCGGTGCTGCTGTCACCGGTCGCCGGCACGCT
GGACCCGGCGCAGCTCGCCGAATGGATCGTCCGCGACCGCCTGCCGGTCCGCTTTCAACTACAGTTGCACAAGATACTGT
GGAACGACGCGCGCGGCCGCTGA

Upstream 100 bases:

>100_bases
ACCGCCCAGCGCACGCTGCAGTCGCTGGTCGAACGCTACCCGAGCAGCAACGCCGCGCAGGCGGCCAAGCAACGTCTCGG
CAAGCGCTGAGGAAGCCGCC

Downstream 100 bases:

>100_bases
CCGTGCGCCAGCCTGCTCCGGAACTGCCATGACCGATCTCCCGCGCGCCGTCGTCCTGCTGTCGGGCGGACTCGACTCGG
CGACCTGCCTCGCCATCGCC

Product: putative radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MTEVVRQPVKLRLTEIFASIQGESTRVGLPTTFVRLTGCPLRCSWCDTAYAFTGGEARALSDVLDDVAALGLRHVCVTGG
EPLAQKYCLALLTALCDAGYSVSLETSGALDIGGVDPRVSRVMDLKAPGSAEVTRNRLENIPLLRARDELKIVLADQADY
DWARAMIADHDLAARCPVLLSPVAGTLDPAQLAEWIVRDRLPVRFQLQLHKILWNDARGR

Sequences:

>Translated_220_residues
MTEVVRQPVKLRLTEIFASIQGESTRVGLPTTFVRLTGCPLRCSWCDTAYAFTGGEARALSDVLDDVAALGLRHVCVTGG
EPLAQKYCLALLTALCDAGYSVSLETSGALDIGGVDPRVSRVMDLKAPGSAEVTRNRLENIPLLRARDELKIVLADQADY
DWARAMIADHDLAARCPVLLSPVAGTLDPAQLAEWIVRDRLPVRFQLQLHKILWNDARGR
>Mature_219_residues
TEVVRQPVKLRLTEIFASIQGESTRVGLPTTFVRLTGCPLRCSWCDTAYAFTGGEARALSDVLDDVAALGLRHVCVTGGE
PLAQKYCLALLTALCDAGYSVSLETSGALDIGGVDPRVSRVMDLKAPGSAEVTRNRLENIPLLRARDELKIVLADQADYD
WARAMIADHDLAARCPVLLSPVAGTLDPAQLAEWIVRDRLPVRFQLQLHKILWNDARGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=196, Percent_Identity=31.1224489795918, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24037; Mature: 23906

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEVVRQPVKLRLTEIFASIQGESTRVGLPTTFVRLTGCPLRCSWCDTAYAFTGGEARAL
CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCEEECCCCCCEEECCCHHHHH
SDVLDDVAALGLRHVCVTGGEPLAQKYCLALLTALCDAGYSVSLETSGALDIGGVDPRVS
HHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCHHHH
RVMDLKAPGSAEVTRNRLENIPLLRARDELKIVLADQADYDWARAMIADHDLAARCPVLL
HHEECCCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCCHHHHHHHHHCCCHHHCCCHHC
SPVAGTLDPAQLAEWIVRDRLPVRFQLQLHKILWNDARGR
CCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TEVVRQPVKLRLTEIFASIQGESTRVGLPTTFVRLTGCPLRCSWCDTAYAFTGGEARAL
CHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCEEECCCCCCEEECCCHHHHH
SDVLDDVAALGLRHVCVTGGEPLAQKYCLALLTALCDAGYSVSLETSGALDIGGVDPRVS
HHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEECCCCCHHHH
RVMDLKAPGSAEVTRNRLENIPLLRARDELKIVLADQADYDWARAMIADHDLAARCPVLL
HHEECCCCCCHHHHHHHHHCCCCEEECCCEEEEEECCCCHHHHHHHHHCCCHHHCCCHHC
SPVAGTLDPAQLAEWIVRDRLPVRFQLQLHKILWNDARGR
CCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]