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The map label for this gene is 119896643

Identifier: 119896643

GI number: 119896643

Start: 376345

End: 376629

Strand: Reverse

Name: 119896643

Synonym: azo0352

Alternate gene names: NA

Gene position: 376629-376345 (Counterclockwise)

Preceding gene: 119896644

Following gene: 119896642

Centisome position: 8.61

GC content: 57.54

Gene sequence:

>285_bases
GTGGAAAGATCCTTCATCTTCAAAAGCAAGCATGGTCAGACCGTGGGCCTACCCCCGCGGGTCGAACTGCCGAAGTCGGT
CAAGCAGGTGGACATCGTTGCGCTCGGCCAAGCACGCTTGATCGTTCCCTCTGGCGGCGCTTGGGATTCATGGTTCGAGA
GCGAAGGAGTCAGCGACGACTTCATGGACACTCGGGAACAGCCGTCAGGGCAGTACCGCGGAAGTTTCCGAACACATCAA
CCCTATGCTCGATACCAAGATGATGTCCTAGGCTTGGCTCCCTAG

Upstream 100 bases:

>100_bases
GGAAGCCGAACAGACCAGCCCCGACCGAGAACAATTGGACGAACTGGAGAACTCGCTCGACCCCTGAGCTTTCAAGCCAC
CGCCTTGGGAGAACACCAAC

Downstream 100 bases:

>100_bases
GCATACAAACTGGGCGAGCGAAGCTGGCCCCCACCCCATGACCCCCAACCCCTGGCGCCCGCCCGCCCTCTCCCGCCGCT
TCATCCCCGTCTGGCAGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MERSFIFKSKHGQTVGLPPRVELPKSVKQVDIVALGQARLIVPSGGAWDSWFESEGVSDDFMDTREQPSGQYRGSFRTHQ
PYARYQDDVLGLAP

Sequences:

>Translated_94_residues
MERSFIFKSKHGQTVGLPPRVELPKSVKQVDIVALGQARLIVPSGGAWDSWFESEGVSDDFMDTREQPSGQYRGSFRTHQ
PYARYQDDVLGLAP
>Mature_94_residues
MERSFIFKSKHGQTVGLPPRVELPKSVKQVDIVALGQARLIVPSGGAWDSWFESEGVSDDFMDTREQPSGQYRGSFRTHQ
PYARYQDDVLGLAP

Specific function: Unknown

COG id: COG4456

COG function: function code S; Virulence-associated protein and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10554; Mature: 10554

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERSFIFKSKHGQTVGLPPRVELPKSVKQVDIVALGQARLIVPSGGAWDSWFESEGVSDD
CCCCCEEECCCCCEECCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCC
FMDTREQPSGQYRGSFRTHQPYARYQDDVLGLAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC
>Mature Secondary Structure
MERSFIFKSKHGQTVGLPPRVELPKSVKQVDIVALGQARLIVPSGGAWDSWFESEGVSDD
CCCCCEEECCCCCEECCCCCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCC
FMDTREQPSGQYRGSFRTHQPYARYQDDVLGLAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9171415; 12384590 [H]