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The map label for this gene is nodJ [H]

Identifier: 119896642

GI number: 119896642

Start: 375522

End: 376307

Strand: Reverse

Name: nodJ [H]

Synonym: azo0351

Alternate gene names: 119896642

Gene position: 376307-375522 (Counterclockwise)

Preceding gene: 119896643

Following gene: 119896641

Centisome position: 8.6

GC content: 67.81

Gene sequence:

>786_bases
ATGACCCCCAACCCCTGGCGCCCGCCCGCCCTCTCCCGCCGCTTCATCCCCGTCTGGCAGCGCAACTTCCTGGTCTGGCG
CAAGCTCGCCCTACCCTCCGTGCTCGGCAACCTTGCCGACCCGGTGATCTATCTCTTCGGCCTCGGCTTCGGCATCGGCC
TGCTGGTGCCGGAGGTGGGCGGGGTGTCGTACATCAGCTTCCTCGCCGCGGGCATGGTGTGCTATTCGACGATGAACAGC
GCCACCTTCGAGGTGCTGTATTCCAGCTTTTCGCGCATGCATGTGCAGCGCACCTGGGATGCCATCCTCAATGCGCCGGT
GGCGCTGGACGATGTGGTGTTCGCCGAGCTGGTGTGGGCGGCGTCCAAGGCGTTGCTGTCGGGCGCGGCGATCCTGCTGG
TGACGACGCTGTTCGGGCTGGTGGAGGTGCGCTACGCGCTGTGGGTGCTGCCGCTGATCTTCCTGGTGGGGCTCACGTTC
GCCGCGCTCGGGCTGATCATGACCGCGCTGGCGCCGAGCTACGACTTCTTCATGTACTACTTCACCCTGTTCGTGACGCC
GATGATGCTGGTGTCCGGGGTGTTCTTTCCGGCGGACCAGTTGCCGCCGCTGCTGCATGCGGCGACGCGCGCGCTGCCGC
TGACACATGCGGTGGAGATCGCGCGGCCGCTGCTGCTTGGGCGGGTGCCGGAGGGCGTCGGGCTGCATCTGGCGGTGCTG
GCCGGCTACGCGGTGGTGGCGTTCTGGGTGGCGCTGGCGCTGACGCGGCGTCGCCTGCAGAAGTAG

Upstream 100 bases:

>100_bases
AGTTTCCGAACACATCAACCCTATGCTCGATACCAAGATGATGTCCTAGGCTTGGCTCCCTAGGCATACAAACTGGGCGA
GCGAAGCTGGCCCCCACCCC

Downstream 100 bases:

>100_bases
CTGCACCTGGTGGGGACATGGTCCGATAGGACCATCCCCCGCTTCACCGTCATGCAAATGGCGGGCTTTAGCCTCCTCGG
GTTTCCGGCCGAACCGGTCG

Product: ABC transporter permease NodJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MTPNPWRPPALSRRFIPVWQRNFLVWRKLALPSVLGNLADPVIYLFGLGFGIGLLVPEVGGVSYISFLAAGMVCYSTMNS
ATFEVLYSSFSRMHVQRTWDAILNAPVALDDVVFAELVWAASKALLSGAAILLVTTLFGLVEVRYALWVLPLIFLVGLTF
AALGLIMTALAPSYDFFMYYFTLFVTPMMLVSGVFFPADQLPPLLHAATRALPLTHAVEIARPLLLGRVPEGVGLHLAVL
AGYAVVAFWVALALTRRRLQK

Sequences:

>Translated_261_residues
MTPNPWRPPALSRRFIPVWQRNFLVWRKLALPSVLGNLADPVIYLFGLGFGIGLLVPEVGGVSYISFLAAGMVCYSTMNS
ATFEVLYSSFSRMHVQRTWDAILNAPVALDDVVFAELVWAASKALLSGAAILLVTTLFGLVEVRYALWVLPLIFLVGLTF
AALGLIMTALAPSYDFFMYYFTLFVTPMMLVSGVFFPADQLPPLLHAATRALPLTHAVEIARPLLLGRVPEGVGLHLAVL
AGYAVVAFWVALALTRRRLQK
>Mature_260_residues
TPNPWRPPALSRRFIPVWQRNFLVWRKLALPSVLGNLADPVIYLFGLGFGIGLLVPEVGGVSYISFLAAGMVCYSTMNSA
TFEVLYSSFSRMHVQRTWDAILNAPVALDDVVFAELVWAASKALLSGAAILLVTTLFGLVEVRYALWVLPLIFLVGLTFA
ALGLIMTALAPSYDFFMYYFTLFVTPMMLVSGVFFPADQLPPLLHAATRALPLTHAVEIARPLLLGRVPEGVGLHLAVLA
GYAVVAFWVALALTRRRLQK

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28685; Mature: 28553

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPNPWRPPALSRRFIPVWQRNFLVWRKLALPSVLGNLADPVIYLFGLGFGIGLLVPEVG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GVSYISFLAAGMVCYSTMNSATFEVLYSSFSRMHVQRTWDAILNAPVALDDVVFAELVWA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ASKALLSGAAILLVTTLFGLVEVRYALWVLPLIFLVGLTFAALGLIMTALAPSYDFFMYY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
FTLFVTPMMLVSGVFFPADQLPPLLHAATRALPLTHAVEIARPLLLGRVPEGVGLHLAVL
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
AGYAVVAFWVALALTRRRLQK
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]