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The map label for this gene is ydaM [H]

Identifier: 119896426

GI number: 119896426

Start: 149318

End: 150751

Strand: Reverse

Name: ydaM [H]

Synonym: azo0134

Alternate gene names: 119896426

Gene position: 150751-149318 (Counterclockwise)

Preceding gene: 119896427

Following gene: 119896420

Centisome position: 3.44

GC content: 68.97

Gene sequence:

>1434_bases
ATGAGCGGGCGCTACGCGATCGTCTGCATCGACGACGAGGAAACCATCCTCGAAAGCCTGTCGATGGAACTCGCCGGGCG
CTTCCCCGGCGTCGACCTCGAACTGCTGCAGGACAACGCCGACGCCGAGGGCCTGATCGGCAGCCTGCTCGCCGCCGGGG
TCGAGGTGCCGGTGGTGGTGTGCGACTACATCATGCCGGGGCGCCGCGGCGATGCCGTGCTGGCCGCGGTGCACCGGCTG
GCGCCCGCCGCGCGCACGATCATGCTGACCGGCCAGAGCAACCTCGAAGGCGTCACCCACGCGATCAACCACGCCAACCT
GTACCGCTACATCGCCAAGCCCTGGAACAAGGAAGACCTCGCGCTGACGCTGCAGGGCGCGCTCGAAAGCTACATCCAGG
AAGCCACCATCCAGCGCCAGAACCAGGCCCTGGTCGCGCTCAATGACGGCCTCGAGCGCAAGGTGGCCGAGCGCACCGAG
GCGCTGCGCGCGGCCAACGCCAATCTCACCGAGGCCAACCGCAAGATCGGCGAATACCTGGAGATCATCGACCGTCAGGT
GCTGATCTGCCGCATCAACCGCGCCGGCCTGGTCACCTACGCGTCCGAAGCCTTCTGCCGCCGCAGCGGCTACACCCGCG
CCGACCTGATCGGCCTCAACTACTGGCACGCGCTGTATTCCGCCACCACCGAAACGCTGATGCGCGAAATCCTCGCCCGC
ATCGAGGCCGGCGCCGGCTGGGAAGGCGAGATCCTGCACCAGTGCCGCAACGGCGAGTACTACTGGGCGCGCGAAACCAT
CGCCCCCGACGTCGGCGAGCACGGCGCCGTCATCGGTTTCACCAGCATTCGGCAGGACATCACCGACAAGAAGGCGGTGG
AAGCACTCAGCGTCACCGACCCGCTCACCGGGCTCGCCAACCGGCGCCAGTTCCAGCAGGTGCTGGAAGGCGAGATCGCT
CGCGCCAGCCGTGGCGCGCGCGCGCTCGCGTTCTGCCTGGTCGATGTCGACCACTTCAAGGCCTACAACGACCACTACGG
CCACGCCGCCGGCGACAAGGTGTTGCAGCGCCTGGGGCGGCTGCTCACCGACACCTTCCGCCGCAGCACCGACTTCACCT
TCCGCATCGGCGGCGAGGAATTCGCGCTGCTGTTTCCGGTGCGCGACAGCGCCGAAGCCGCCACCACTGCCGCCGAGCTG
GTGGCGCTGGTGGAGGCGCAGGCCATCGTGCACGCCTTCGGCAGCCCCGGCCCGCACCTGACGATTTCGATGGGGGTGCG
GGTCATCAGCCCGCGCGAGCAGCCGCTGGACGTGGACCGCATCTTCCAGGAAGCGGACGCGCTGCTGTACCAGGCCAAGC
ACGAAGGCCGCAACCGCTACGTGCTGGGCGGCGAGGCGGTGGCCGCGGCGCCCGCCTCGTCCGGCGACGCCTAG

Upstream 100 bases:

>100_bases
ACGCGCGCGAACACGCCGACCTCTACTGCTTCCTGTCCAAGCCCTGGGACAAGGACGAGCTGCGCAACGCCATCCTCGAC
GGCATCCGGGACAAACGCCC

Downstream 100 bases:

>100_bases
GCGGGGGCCAGCCAGTCGGCGTGGGCCGGGTCCTCACCGCGCACGCAGGCGAAGAAGCGGCGCTGCAGCGCCTGCGTCAC
CGGCCCCGGCCTGCCGCTGC

Product: putative response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MSGRYAIVCIDDEETILESLSMELAGRFPGVDLELLQDNADAEGLIGSLLAAGVEVPVVVCDYIMPGRRGDAVLAAVHRL
APAARTIMLTGQSNLEGVTHAINHANLYRYIAKPWNKEDLALTLQGALESYIQEATIQRQNQALVALNDGLERKVAERTE
ALRAANANLTEANRKIGEYLEIIDRQVLICRINRAGLVTYASEAFCRRSGYTRADLIGLNYWHALYSATTETLMREILAR
IEAGAGWEGEILHQCRNGEYYWARETIAPDVGEHGAVIGFTSIRQDITDKKAVEALSVTDPLTGLANRRQFQQVLEGEIA
RASRGARALAFCLVDVDHFKAYNDHYGHAAGDKVLQRLGRLLTDTFRRSTDFTFRIGGEEFALLFPVRDSAEAATTAAEL
VALVEAQAIVHAFGSPGPHLTISMGVRVISPREQPLDVDRIFQEADALLYQAKHEGRNRYVLGGEAVAAAPASSGDA

Sequences:

>Translated_477_residues
MSGRYAIVCIDDEETILESLSMELAGRFPGVDLELLQDNADAEGLIGSLLAAGVEVPVVVCDYIMPGRRGDAVLAAVHRL
APAARTIMLTGQSNLEGVTHAINHANLYRYIAKPWNKEDLALTLQGALESYIQEATIQRQNQALVALNDGLERKVAERTE
ALRAANANLTEANRKIGEYLEIIDRQVLICRINRAGLVTYASEAFCRRSGYTRADLIGLNYWHALYSATTETLMREILAR
IEAGAGWEGEILHQCRNGEYYWARETIAPDVGEHGAVIGFTSIRQDITDKKAVEALSVTDPLTGLANRRQFQQVLEGEIA
RASRGARALAFCLVDVDHFKAYNDHYGHAAGDKVLQRLGRLLTDTFRRSTDFTFRIGGEEFALLFPVRDSAEAATTAAEL
VALVEAQAIVHAFGSPGPHLTISMGVRVISPREQPLDVDRIFQEADALLYQAKHEGRNRYVLGGEAVAAAPASSGDA
>Mature_476_residues
SGRYAIVCIDDEETILESLSMELAGRFPGVDLELLQDNADAEGLIGSLLAAGVEVPVVVCDYIMPGRRGDAVLAAVHRLA
PAARTIMLTGQSNLEGVTHAINHANLYRYIAKPWNKEDLALTLQGALESYIQEATIQRQNQALVALNDGLERKVAERTEA
LRAANANLTEANRKIGEYLEIIDRQVLICRINRAGLVTYASEAFCRRSGYTRADLIGLNYWHALYSATTETLMREILARI
EAGAGWEGEILHQCRNGEYYWARETIAPDVGEHGAVIGFTSIRQDITDKKAVEALSVTDPLTGLANRRQFQQVLEGEIAR
ASRGARALAFCLVDVDHFKAYNDHYGHAAGDKVLQRLGRLLTDTFRRSTDFTFRIGGEEFALLFPVRDSAEAATTAAELV
ALVEAQAIVHAFGSPGPHLTISMGVRVISPREQPLDVDRIFQEADALLYQAKHEGRNRYVLGGEAVAAAPASSGDA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=37.5690607734807, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1788381, Length=296, Percent_Identity=28.3783783783784, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=36.875, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=34.7058823529412, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1787816, Length=189, Percent_Identity=33.8624338624339, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=33.3333333333333, Blast_Score=83, Evalue=5e-17,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=32.3170731707317, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082007, Length=189, Percent_Identity=30.1587301587302, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=32.7380952380952, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=30.0613496932515, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787056, Length=158, Percent_Identity=32.9113924050633, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=176, Percent_Identity=27.8409090909091, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 52187; Mature: 52055

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGRYAIVCIDDEETILESLSMELAGRFPGVDLELLQDNADAEGLIGSLLAAGVEVPVVV
CCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHH
CDYIMPGRRGDAVLAAVHRLAPAARTIMLTGQSNLEGVTHAINHANLYRYIAKPWNKEDL
HHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
ALTLQGALESYIQEATIQRQNQALVALNDGLERKVAERTEALRAANANLTEANRKIGEYL
EEEHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
EIIDRQVLICRINRAGLVTYASEAFCRRSGYTRADLIGLNYWHALYSATTETLMREILAR
HHHCCEEEEEEECCCCEEHHHHHHHHHHCCCCHHHEECHHHHHHHHHHHHHHHHHHHHHH
IEAGAGWEGEILHQCRNGEYYWARETIAPDVGEHGAVIGFTSIRQDITDKKAVEALSVTD
HHCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCC
PLTGLANRRQFQQVLEGEIARASRGARALAFCLVDVDHFKAYNDHYGHAAGDKVLQRLGR
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHEEEHHHHHHHCCCCCCCHHHHHHHHHHH
LLTDTFRRSTDFTFRIGGEEFALLFPVRDSAEAATTAAELVALVEAQAIVHAFGSPGPHL
HHHHHHHCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
TISMGVRVISPREQPLDVDRIFQEADALLYQAKHEGRNRYVLGGEAVAAAPASSGDA
EEEECEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCC
>Mature Secondary Structure 
SGRYAIVCIDDEETILESLSMELAGRFPGVDLELLQDNADAEGLIGSLLAAGVEVPVVV
CCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHH
CDYIMPGRRGDAVLAAVHRLAPAARTIMLTGQSNLEGVTHAINHANLYRYIAKPWNKEDL
HHHHCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
ALTLQGALESYIQEATIQRQNQALVALNDGLERKVAERTEALRAANANLTEANRKIGEYL
EEEHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
EIIDRQVLICRINRAGLVTYASEAFCRRSGYTRADLIGLNYWHALYSATTETLMREILAR
HHHCCEEEEEEECCCCEEHHHHHHHHHHCCCCHHHEECHHHHHHHHHHHHHHHHHHHHHH
IEAGAGWEGEILHQCRNGEYYWARETIAPDVGEHGAVIGFTSIRQDITDKKAVEALSVTD
HHCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCC
PLTGLANRRQFQQVLEGEIARASRGARALAFCLVDVDHFKAYNDHYGHAAGDKVLQRLGR
CHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHEEEHHHHHHHCCCCCCCHHHHHHHHHHH
LLTDTFRRSTDFTFRIGGEEFALLFPVRDSAEAATTAAELVALVEAQAIVHAFGSPGPHL
HHHHHHHCCCCEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
TISMGVRVISPREQPLDVDRIFQEADALLYQAKHEGRNRYVLGGEAVAAAPASSGDA
EEEECEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]