Click here to switch to the map view.

The map label for this gene is oxyR [H]

Identifier: 119896386

GI number: 119896386

Start: 111975

End: 112913

Strand: Direct

Name: oxyR [H]

Synonym: azo0094

Alternate gene names: 119896386

Gene position: 111975-112913 (Clockwise)

Preceding gene: 119896383

Following gene: 119896391

Centisome position: 2.56

GC content: 68.58

Gene sequence:

>939_bases
ATGACCCTGACCGATCTCCGCTACCTCGTCGCGCTCGCCCACGAACGCCATTTCGGCCGTGCCGCCGAAAAATGCCACGT
CTCGCAGCCGACGCTGTCGGTGGCGATCAAGAAGGTCGAGGACGAGCTGGGCATTGCGCTGTTCGAGCGCAGCGCCTCGG
AAGTGAAGATCACCGAGACGGGCCGCCGCATCGTCGCGCAGGCGGAAAAGGTGCTGGTCGAGGCCAGCCAGATCCACGAG
ATCGCCGCCGCCGGCAAGGACCCGCTGGCGGGACCGCTGCGGGTGGGGGTGATCTACACCATCGGCCCCTACCTGCTGCC
GCGGCTGATTCCGCGGGTGCACCAGCTGGCGCCGCGAATGCCGCTGATCATCCAGGAGAACTACACCACGCGGCTGGCCG
AAGCGCTCAAGCGCGGCGAACTCGACGTGATCATCATCAGCCTGCCGTTCGAGGAGGCGGGCATCGTCGCGCAGCCGGTG
TACGACGAGCCGTTTCGCGTGCTGCTGCCGGCGGCCCACCCCTGGACCGCGTTGGACAGCATCGACCCCGAGCATCTGGC
CGAAGACCAGCTGCTGCTGCTTGGCTCGGGCAACTGCTTCCGCGAGCAGGTGCTGGAAGTGTGCCCGCACTGCCGCAACG
TCGGCGGCCTGCAACGCACGCTGGAAGGCAGCTCGCTGGAGACGATCCGGCACATGGTGGCCACCGGGCTGGGGGTGACG
GTGCTGCCGAGTTCGGCGGCGGACGAACTCACGATCCAGAATCCGCTGGTTGCCGTGCGTCCCTTCACTGCCCCCGAGCC
ATCGCGCCGCGTGGCGCTGGCCTGGCGCGTCACCTATCCCCGCAGCGGCGCGATCGACATCCTGCGTACCGCCATCCTGG
AAAGCGAACTTCCCGGCGTGCGGCCGATCGGACGGGTGCCCGCGGTGGAAGCGGCCTGA

Upstream 100 bases:

>100_bases
AGTATAACCCCGCGCGCCGGCTTGAGCGGTGGCGGCGCGGTCGGGGTAACATCGACAAGTCGCTTACCGCCCGGGCGGCA
TCCGCGCCGTCCTCGAATCC

Downstream 100 bases:

>100_bases
GGTCGGATACTCCAACACGCAAAACGGCCCTCACGGGCCGTTTTGCTGGCTGCATCGCGGCGAAAACTCAGCCGGCGGTC
TTGCCACCCGCGCGCTTGCG

Product: putative oxyR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MTLTDLRYLVALAHERHFGRAAEKCHVSQPTLSVAIKKVEDELGIALFERSASEVKITETGRRIVAQAEKVLVEASQIHE
IAAAGKDPLAGPLRVGVIYTIGPYLLPRLIPRVHQLAPRMPLIIQENYTTRLAEALKRGELDVIIISLPFEEAGIVAQPV
YDEPFRVLLPAAHPWTALDSIDPEHLAEDQLLLLGSGNCFREQVLEVCPHCRNVGGLQRTLEGSSLETIRHMVATGLGVT
VLPSSAADELTIQNPLVAVRPFTAPEPSRRVALAWRVTYPRSGAIDILRTAILESELPGVRPIGRVPAVEAA

Sequences:

>Translated_312_residues
MTLTDLRYLVALAHERHFGRAAEKCHVSQPTLSVAIKKVEDELGIALFERSASEVKITETGRRIVAQAEKVLVEASQIHE
IAAAGKDPLAGPLRVGVIYTIGPYLLPRLIPRVHQLAPRMPLIIQENYTTRLAEALKRGELDVIIISLPFEEAGIVAQPV
YDEPFRVLLPAAHPWTALDSIDPEHLAEDQLLLLGSGNCFREQVLEVCPHCRNVGGLQRTLEGSSLETIRHMVATGLGVT
VLPSSAADELTIQNPLVAVRPFTAPEPSRRVALAWRVTYPRSGAIDILRTAILESELPGVRPIGRVPAVEAA
>Mature_311_residues
TLTDLRYLVALAHERHFGRAAEKCHVSQPTLSVAIKKVEDELGIALFERSASEVKITETGRRIVAQAEKVLVEASQIHEI
AAAGKDPLAGPLRVGVIYTIGPYLLPRLIPRVHQLAPRMPLIIQENYTTRLAEALKRGELDVIIISLPFEEAGIVAQPVY
DEPFRVLLPAAHPWTALDSIDPEHLAEDQLLLLGSGNCFREQVLEVCPHCRNVGGLQRTLEGSSLETIRHMVATGLGVTV
LPSSAADELTIQNPLVAVRPFTAPEPSRRVALAWRVTYPRSGAIDILRTAILESELPGVRPIGRVPAVEAA

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=39.9317406143345, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI157672245, Length=250, Percent_Identity=28.8, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788887, Length=278, Percent_Identity=28.0575539568345, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=28.4584980237154, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI2367136, Length=275, Percent_Identity=28, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788748, Length=247, Percent_Identity=25.5060728744939, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI145693105, Length=251, Percent_Identity=26.6932270916335, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790262, Length=255, Percent_Identity=27.4509803921569, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787879, Length=270, Percent_Identity=29.6296296296296, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788296, Length=231, Percent_Identity=26.4069264069264, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082132, Length=252, Percent_Identity=26.984126984127, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787601, Length=180, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788481, Length=263, Percent_Identity=24.3346007604563, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788297, Length=255, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=272, Percent_Identity=26.8382352941176, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87081904, Length=178, Percent_Identity=28.0898876404494, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34076; Mature: 33945

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLTDLRYLVALAHERHFGRAAEKCHVSQPTLSVAIKKVEDELGIALFERSASEVKITET
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
GRRIVAQAEKVLVEASQIHEIAAAGKDPLAGPLRVGVIYTIGPYLLPRLIPRVHQLAPRM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCC
PLIIQENYTTRLAEALKRGELDVIIISLPFEEAGIVAQPVYDEPFRVLLPAAHPWTALDS
CEEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCEECCCCCCCCEEEECCCCCCCHHCC
IDPEHLAEDQLLLLGSGNCFREQVLEVCPHCRNVGGLQRTLEGSSLETIRHMVATGLGVT
CCHHHHCCCCEEEEECCCHHHHHHHHHCHHHCCCCCHHHHCCCCHHHHHHHHHHHCCCEE
VLPSSAADELTIQNPLVAVRPFTAPEPSRRVALAWRVTYPRSGAIDILRTAILESELPGV
EECCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCC
RPIGRVPAVEAA
CCCCCCCCCCCC
>Mature Secondary Structure 
TLTDLRYLVALAHERHFGRAAEKCHVSQPTLSVAIKKVEDELGIALFERSASEVKITET
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
GRRIVAQAEKVLVEASQIHEIAAAGKDPLAGPLRVGVIYTIGPYLLPRLIPRVHQLAPRM
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCC
PLIIQENYTTRLAEALKRGELDVIIISLPFEEAGIVAQPVYDEPFRVLLPAAHPWTALDS
CEEEECCCHHHHHHHHHCCCEEEEEEECCCCCCCCEECCCCCCCCEEEECCCCCCCHHCC
IDPEHLAEDQLLLLGSGNCFREQVLEVCPHCRNVGGLQRTLEGSSLETIRHMVATGLGVT
CCHHHHCCCCEEEEECCCHHHHHHHHHCHHHCCCCCHHHHCCCCHHHHHHHHHHHCCCEE
VLPSSAADELTIQNPLVAVRPFTAPEPSRRVALAWRVTYPRSGAIDILRTAILESELPGV
EECCCCCCCEEECCCEEEEECCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCC
RPIGRVPAVEAA
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA