| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776665
Identifier: 119776665
GI number: 119776665
Start: 4165127
End: 4165651
Strand: Direct
Name: 119776665
Synonym: Sama_3533
Alternate gene names: NA
Gene position: 4165127-4165651 (Clockwise)
Preceding gene: 119776664
Following gene: 119776666
Centisome position: 96.73
GC content: 53.52
Gene sequence:
>525_bases ATGAGATATTGGTTGCTTGGAGCAATGATGGTGACAGCCGGCGCCTCGGCCAACACCAGTTTGTTCAACTTGCTCAATAC GGGTGACAGAGTCAACCCTGTGGCCATGATGGAAAGGGTGGAGACAGACCATCCCGGCTATATCGCCGATTTTGAGCTTG ATGTGCAGGACGGAGAACTCAGATATGAGTTCGACGTGATCAATGCCGATGAAAACACCCTTACAGAGCTGACCTTTCGC GCCGCCGATGGCACACTGGTGCTGCAACGCAACAGTAAGCTGGAAGCCGATGACCACGACGAGCTGGAAGCGGTAAAGCT GCTCGACCGCAAGCAACTGCGTTTTTCCGAACTGGTGCGCATGGCCAGCGATCAGCACGAAGGCAAGTTGATGGGCGCCC AGCTGGAGCACGATCTGGGGATCAGCTACCTTGAATTCAAAATGGTGGATGAAAACGGCAAGCGCAAACACGCCTTTGAC ATCCAAAAGCTTAAACCCTTGCCAATGCTGCAATGGGAACGCTGA
Upstream 100 bases:
>100_bases GGCTGGCGCGGCCCGGAAGTGGAGATAGACAGCATCCGCGTGGTGACATCGCCGGGATAGTCTTTTAGGATACCGACACT GGTTTTTTACGGAGGCATCA
Downstream 100 bases:
>100_bases GCCACACTAAGGAGCAACAGTGAAAATCCTTTTGGTTGAAGACGACAACACCACTTCAGAATACATAGTCAAAGGTTTTT CCGAACAGGGACACAATATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 174; Mature: 174
Protein sequence:
>174_residues MRYWLLGAMMVTAGASANTSLFNLLNTGDRVNPVAMMERVETDHPGYIADFELDVQDGELRYEFDVINADENTLTELTFR AADGTLVLQRNSKLEADDHDELEAVKLLDRKQLRFSELVRMASDQHEGKLMGAQLEHDLGISYLEFKMVDENGKRKHAFD IQKLKPLPMLQWER
Sequences:
>Translated_174_residues MRYWLLGAMMVTAGASANTSLFNLLNTGDRVNPVAMMERVETDHPGYIADFELDVQDGELRYEFDVINADENTLTELTFR AADGTLVLQRNSKLEADDHDELEAVKLLDRKQLRFSELVRMASDQHEGKLMGAQLEHDLGISYLEFKMVDENGKRKHAFD IQKLKPLPMLQWER >Mature_174_residues MRYWLLGAMMVTAGASANTSLFNLLNTGDRVNPVAMMERVETDHPGYIADFELDVQDGELRYEFDVINADENTLTELTFR AADGTLVLQRNSKLEADDHDELEAVKLLDRKQLRFSELVRMASDQHEGKLMGAQLEHDLGISYLEFKMVDENGKRKHAFD IQKLKPLPMLQWER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19974; Mature: 19974
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYWLLGAMMVTAGASANTSLFNLLNTGDRVNPVAMMERVETDHPGYIADFELDVQDGEL CCEEHEEHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCE RYEFDVINADENTLTELTFRAADGTLVLQRNSKLEADDHDELEAVKLLDRKQLRFSELVR EEEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH MASDQHEGKLMGAQLEHDLGISYLEFKMVDENGKRKHAFDIQKLKPLPMLQWER HHCCCCCCEEECCEECCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCC >Mature Secondary Structure MRYWLLGAMMVTAGASANTSLFNLLNTGDRVNPVAMMERVETDHPGYIADFELDVQDGEL CCEEHEEHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCE RYEFDVINADENTLTELTFRAADGTLVLQRNSKLEADDHDELEAVKLLDRKQLRFSELVR EEEEEEEECCCCCEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHH MASDQHEGKLMGAQLEHDLGISYLEFKMVDENGKRKHAFDIQKLKPLPMLQWER HHCCCCCCEEECCEECCCCCCEEEEEEEECCCCCCCCCCCHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA