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The map label for this gene is yhgF [H]

Identifier: 119776640

GI number: 119776640

Start: 4141835

End: 4144171

Strand: Reverse

Name: yhgF [H]

Synonym: Sama_3508

Alternate gene names: 119776640

Gene position: 4144171-4141835 (Counterclockwise)

Preceding gene: 119776641

Following gene: 119776639

Centisome position: 96.24

GC content: 57.38

Gene sequence:

>2337_bases
ATGACATCGAATATTGCGCGGATCATTGCCGATGAACTGAATGTCCGTGAGGCGCAGGTCACTGCCACCATCGCCCTGCT
GGATGACGGTGCCACGGTTCCCTTTGTGGCCCGCTATCGTAAAGAAGTGACAGGGGGGCTGGATGACACCCAACTGCGTA
CTCTGCACAGCCGTCTTGGTTATTTGCGTGAGCTGAATGACCGCAGGGACGTGATCCTCTCCTCCATCGACGCTCAGGGC
AAACTGACTCCCGAACTCAAGGCCGCTATTCTGGGTGCTGACAGCAAGACCCGTCTTGAAGATCTCTATTTGCCCTATAA
ACCCAAGCGCCGCACCAAGGGACAGATTGCCATCGAAGCCGGAATCGAACCGCTGGCGAACCTCTTGCTGCAGCAGCGGC
CTGCAAACCCCGAGGCCGAAGCCGCTGCCTTTATCAATACCGAGGCCGGTTTTGCCGATACCCGTGCCGTGCTAGACGGT
GCCCGTTACATTCTGATGGAACGCTTTGCCGAAGATGCCGAGCTGATCCGCAAGGTGCGTGAACACCTGTCTGGAGTGGC
CGTGCTGCAAAGCAAGGTGATTGAAGGCAAAGAAAAAGAAGGGGCTAAGTTTCGCGATTACTTTGAACACAGCGAGCTGC
TGGCCAAAGTTCCTTCCCACAGGGCGCTGGCCATGTTGCGTGGCCGCAATGAGGGCATTCTCAGCCTGAGCATGGTTGCC
GACCCGGACTCAGAACCCGGCAGCGGCAGTTATTGTGAGGTCATTATCGCCAACCATCTGGGCTTGACCCTGGGCGACAG
TGAGGCCGATAAGTGGCTCAAGACAGTGGTTACCGGTACCTGGCGTATCAAGGTGGCGCTGCAGATGGAAACCGAGTTTA
TTTCCCGTTTGCGTGAACAGGCCGAGGACGACGCCATCAAGGTCTTTGCCCGTAATCTGCACGATCTGCTGATGGCGGCG
CCAGCCGGTTCCAAGGCGACCATGGGGCTGGACCCGGGGCTGAGAACCGGCGTGAAGGTGGCCGTGGTGAACGACACAGG
CAAACTGGTGGCTCACAGCACCATTTTCCCTCACGAGCCACAAAATCAATGGGATAAGTCGCTGAGAACCCTGGCTAACC
TGGTGAGTATGCACAAGGTGGAGCTGATTGCCGTGGGCAATGGCACCGCCTCCCGCGAAACCGACAAGCTGGCGGCTGAA
TTGATTGCGGCGGTCAAAGAACATCACCCAACGCTCACCAAGGTCATGGTAAGTGAGGCGGGCGCATCTGTTTATTCGGC
GTCTGAGCTGGCGGCCAATGAATTTCCGGATTTGGATGTGTCCATCCGCGGCGCCGTGTCCATCGCCCGTCGCTTGCAGG
ACCCGCTGGCGGAGTTGGTCAAGATTGAGCCCAAGTCCATTGGCGTGGGTCAGTATCAACACGATGTGAGCCAGAGCCAA
CTGTCCCAGTCGCTGGAAGCCGTGGTTGAAGACTGCGTAAACAGTGTGGGTGTGGACGTTAACATGGCGTCTGTTCCCCT
GCTCAGCCAGGTGTCTGGCCTCAACAAGACGCTGGCCAAAAATCTGGTGGACTACCGCGACGAGCACGGCCAGTTCAAGA
GCCGAAAAGAGCTGCTCAAGGTGCCTCGACTCGGGCCCAAAGCCTTTGAGCAGGCCGCCGGCTTTTTGCGTATCCGCGAG
GGTGATAACCCCCTCGATGCGTCGGCAGTGCACCCCGAAGCCTATTCACTGGTGGAAACCATCGCTCAAACCCGTGAAGT
GCCGCTGGCTAATCTCATCGGCAATACCGAGCTTATCCGTACCTTGAAGGCAGGGGATTTTGTCACAGACGCCTTTGGTT
TACCCACGGTGACGGATATTCTCAAGGAATTGGACAAACCCGGTCGCGACCCCCGAGGCGAGTTTAAAACGGCGCACTTT
AAAGAGGGCGTGACTGAAGTTCGTGACCTGAAGCCGGAGATGATCCTCGAAGGCGTGGTGACCAACGTGACCAATTTCGG
TGCCTTTGTGGATGTGGGCGTGCATCAGGACGGTCTGGTACACATATCTTCCTTGTCGGACAAGTTTGTCAGCGACCCCC
ATACCGTGGTGAAGGCCGGTGATGTGGTGAAGGTGAAAGTGATGGAAGTGGACGTCGAGCGTAAGCGTATCGGCCTGTCG
ATGCGGCTCGATGAAAAACCTCAGCCAGCTCAGGCCGCTAAGGGCAAGGGGGCGCCTGCCGCCAGAACAGCCCAGGCCAA
GGGTGGCAAGCCCCAGTCCAAACCCCAGAAGCCTCAGGCTATCAATGCGGCCATGGGCAATGCGTTTGCAGATGCTTTCG
CCAAAATGAAGAAATAA

Upstream 100 bases:

>100_bases
AGGCCTACTTGCATGAAACTGCGGGGTGGCCGTGATACTCTTGGGCCACTGCCGATCCTTTCATGTGTTTATTGACACTT
AAGACGTACGAGTAAAACAG

Downstream 100 bases:

>100_bases
GTATTAGCTTCAATCGGTTGAAAACGCGGCTTTGGCCGCGTTTTTTGCTTTTTACGGTCAAATCGAAAAATTGTGTGAAT
CTTTCATGAACTTTTGTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 778; Mature: 777

Protein sequence:

>778_residues
MTSNIARIIADELNVREAQVTATIALLDDGATVPFVARYRKEVTGGLDDTQLRTLHSRLGYLRELNDRRDVILSSIDAQG
KLTPELKAAILGADSKTRLEDLYLPYKPKRRTKGQIAIEAGIEPLANLLLQQRPANPEAEAAAFINTEAGFADTRAVLDG
ARYILMERFAEDAELIRKVREHLSGVAVLQSKVIEGKEKEGAKFRDYFEHSELLAKVPSHRALAMLRGRNEGILSLSMVA
DPDSEPGSGSYCEVIIANHLGLTLGDSEADKWLKTVVTGTWRIKVALQMETEFISRLREQAEDDAIKVFARNLHDLLMAA
PAGSKATMGLDPGLRTGVKVAVVNDTGKLVAHSTIFPHEPQNQWDKSLRTLANLVSMHKVELIAVGNGTASRETDKLAAE
LIAAVKEHHPTLTKVMVSEAGASVYSASELAANEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQ
LSQSLEAVVEDCVNSVGVDVNMASVPLLSQVSGLNKTLAKNLVDYRDEHGQFKSRKELLKVPRLGPKAFEQAAGFLRIRE
GDNPLDASAVHPEAYSLVETIAQTREVPLANLIGNTELIRTLKAGDFVTDAFGLPTVTDILKELDKPGRDPRGEFKTAHF
KEGVTEVRDLKPEMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHTVVKAGDVVKVKVMEVDVERKRIGLS
MRLDEKPQPAQAAKGKGAPAARTAQAKGGKPQSKPQKPQAINAAMGNAFADAFAKMKK

Sequences:

>Translated_778_residues
MTSNIARIIADELNVREAQVTATIALLDDGATVPFVARYRKEVTGGLDDTQLRTLHSRLGYLRELNDRRDVILSSIDAQG
KLTPELKAAILGADSKTRLEDLYLPYKPKRRTKGQIAIEAGIEPLANLLLQQRPANPEAEAAAFINTEAGFADTRAVLDG
ARYILMERFAEDAELIRKVREHLSGVAVLQSKVIEGKEKEGAKFRDYFEHSELLAKVPSHRALAMLRGRNEGILSLSMVA
DPDSEPGSGSYCEVIIANHLGLTLGDSEADKWLKTVVTGTWRIKVALQMETEFISRLREQAEDDAIKVFARNLHDLLMAA
PAGSKATMGLDPGLRTGVKVAVVNDTGKLVAHSTIFPHEPQNQWDKSLRTLANLVSMHKVELIAVGNGTASRETDKLAAE
LIAAVKEHHPTLTKVMVSEAGASVYSASELAANEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQ
LSQSLEAVVEDCVNSVGVDVNMASVPLLSQVSGLNKTLAKNLVDYRDEHGQFKSRKELLKVPRLGPKAFEQAAGFLRIRE
GDNPLDASAVHPEAYSLVETIAQTREVPLANLIGNTELIRTLKAGDFVTDAFGLPTVTDILKELDKPGRDPRGEFKTAHF
KEGVTEVRDLKPEMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHTVVKAGDVVKVKVMEVDVERKRIGLS
MRLDEKPQPAQAAKGKGAPAARTAQAKGGKPQSKPQKPQAINAAMGNAFADAFAKMKK
>Mature_777_residues
TSNIARIIADELNVREAQVTATIALLDDGATVPFVARYRKEVTGGLDDTQLRTLHSRLGYLRELNDRRDVILSSIDAQGK
LTPELKAAILGADSKTRLEDLYLPYKPKRRTKGQIAIEAGIEPLANLLLQQRPANPEAEAAAFINTEAGFADTRAVLDGA
RYILMERFAEDAELIRKVREHLSGVAVLQSKVIEGKEKEGAKFRDYFEHSELLAKVPSHRALAMLRGRNEGILSLSMVAD
PDSEPGSGSYCEVIIANHLGLTLGDSEADKWLKTVVTGTWRIKVALQMETEFISRLREQAEDDAIKVFARNLHDLLMAAP
AGSKATMGLDPGLRTGVKVAVVNDTGKLVAHSTIFPHEPQNQWDKSLRTLANLVSMHKVELIAVGNGTASRETDKLAAEL
IAAVKEHHPTLTKVMVSEAGASVYSASELAANEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQL
SQSLEAVVEDCVNSVGVDVNMASVPLLSQVSGLNKTLAKNLVDYRDEHGQFKSRKELLKVPRLGPKAFEQAAGFLRIREG
DNPLDASAVHPEAYSLVETIAQTREVPLANLIGNTELIRTLKAGDFVTDAFGLPTVTDILKELDKPGRDPRGEFKTAHFK
EGVTEVRDLKPEMILEGVVTNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHTVVKAGDVVKVKVMEVDVERKRIGLSM
RLDEKPQPAQAAKGKGAPAARTAQAKGGKPQSKPQKPQAINAAMGNAFADAFAKMKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=797, Percent_Identity=31.1166875784191, Blast_Score=350, Evalue=2e-96,
Organism=Homo sapiens, GI27597090, Length=729, Percent_Identity=23.4567901234568, Blast_Score=105, Evalue=1e-22,
Organism=Escherichia coli, GI87082262, Length=763, Percent_Identity=65.3997378768021, Blast_Score=990, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=89, Percent_Identity=40.4494382022472, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17511129, Length=732, Percent_Identity=26.9125683060109, Blast_Score=215, Evalue=8e-56,
Organism=Caenorhabditis elegans, GI17552892, Length=211, Percent_Identity=30.3317535545024, Blast_Score=70, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321552, Length=191, Percent_Identity=28.7958115183246, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI62484314, Length=769, Percent_Identity=30.2990897269181, Blast_Score=351, Evalue=1e-96,
Organism=Drosophila melanogaster, GI24640080, Length=456, Percent_Identity=22.1491228070175, Blast_Score=90, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84548; Mature: 84416

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50126 S1 ; PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNIARIIADELNVREAQVTATIALLDDGATVPFVARYRKEVTGGLDDTQLRTLHSRLG
CCCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
YLRELNDRRDVILSSIDAQGKLTPELKAAILGADSKTRLEDLYLPYKPKRRTKGQIAIEA
HHHHCCCHHHHHHHHCCCCCCCCHHHHHHEECCCCCHHHHHHCCCCCCCCCCCCCEEEEC
GIEPLANLLLQQRPANPEAEAAAFINTEAGFADTRAVLDGARYILMERFAEDAELIRKVR
CHHHHHHHHHHCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHLSGVAVLQSKVIEGKEKEGAKFRDYFEHSELLAKVPSHRALAMLRGRNEGILSLSMVA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEE
DPDSEPGSGSYCEVIIANHLGLTLGDSEADKWLKTVVTGTWRIKVALQMETEFISRLREQ
CCCCCCCCCCEEEEEEECCCCEEECCCHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHH
AEDDAIKVFARNLHDLLMAAPAGSKATMGLDPGLRTGVKVAVVNDTGKLVAHSTIFPHEP
HHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEEEEECCCCEEEECCCCCCCC
QNQWDKSLRTLANLVSMHKVELIAVGNGTASRETDKLAAELIAAVKEHHPTLTKVMVSEA
CHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHC
GASVYSASELAANEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQ
CCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LSQSLEAVVEDCVNSVGVDVNMASVPLLSQVSGLNKTLAKNLVDYRDEHGQFKSRKELLK
HHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VPRLGPKAFEQAAGFLRIREGDNPLDASAVHPEAYSLVETIAQTREVPLANLIGNTELIR
CCCCCHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHH
TLKAGDFVTDAFGLPTVTDILKELDKPGRDPRGEFKTAHFKEGVTEVRDLKPEMILEGVV
HHHCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
TNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHTVVKAGDVVKVKVMEVDVERKRIGLS
HHHHHCCCEEEECCCCCCCEEEEHHHHHHCCCCHHHEECCCEEEEEEEEEEHHHHHCCCE
MRLDEKPQPAQAAKGKGAPAARTAQAKGGKPQSKPQKPQAINAAMGNAFADAFAKMKK
EEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSNIARIIADELNVREAQVTATIALLDDGATVPFVARYRKEVTGGLDDTQLRTLHSRLG
CCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
YLRELNDRRDVILSSIDAQGKLTPELKAAILGADSKTRLEDLYLPYKPKRRTKGQIAIEA
HHHHCCCHHHHHHHHCCCCCCCCHHHHHHEECCCCCHHHHHHCCCCCCCCCCCCCEEEEC
GIEPLANLLLQQRPANPEAEAAAFINTEAGFADTRAVLDGARYILMERFAEDAELIRKVR
CHHHHHHHHHHCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EHLSGVAVLQSKVIEGKEKEGAKFRDYFEHSELLAKVPSHRALAMLRGRNEGILSLSMVA
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEE
DPDSEPGSGSYCEVIIANHLGLTLGDSEADKWLKTVVTGTWRIKVALQMETEFISRLREQ
CCCCCCCCCCEEEEEEECCCCEEECCCHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHH
AEDDAIKVFARNLHDLLMAAPAGSKATMGLDPGLRTGVKVAVVNDTGKLVAHSTIFPHEP
HHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEEEEECCCCEEEECCCCCCCC
QNQWDKSLRTLANLVSMHKVELIAVGNGTASRETDKLAAELIAAVKEHHPTLTKVMVSEA
CHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHC
GASVYSASELAANEFPDLDVSIRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQ
CCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
LSQSLEAVVEDCVNSVGVDVNMASVPLLSQVSGLNKTLAKNLVDYRDEHGQFKSRKELLK
HHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VPRLGPKAFEQAAGFLRIREGDNPLDASAVHPEAYSLVETIAQTREVPLANLIGNTELIR
CCCCCHHHHHHHCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCHHHHH
TLKAGDFVTDAFGLPTVTDILKELDKPGRDPRGEFKTAHFKEGVTEVRDLKPEMILEGVV
HHHCCCHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
TNVTNFGAFVDVGVHQDGLVHISSLSDKFVSDPHTVVKAGDVVKVKVMEVDVERKRIGLS
HHHHHCCCEEEECCCCCCCEEEEHHHHHHCCCCHHHEECCCEEEEEEEEEEHHHHHCCCE
MRLDEKPQPAQAAKGKGAPAARTAQAKGGKPQSKPQKPQAINAAMGNAFADAFAKMKK
EEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]