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The map label for this gene is comF [H]

Identifier: 119776636

GI number: 119776636

Start: 4137615

End: 4138367

Strand: Reverse

Name: comF [H]

Synonym: Sama_3504

Alternate gene names: 119776636

Gene position: 4138367-4137615 (Counterclockwise)

Preceding gene: 119776639

Following gene: 119776634

Centisome position: 96.1

GC content: 57.64

Gene sequence:

>753_bases
ATGGATGAAGTATCCGTGTGGCGCCGAGCATGGACGTATGTCGTTACCACCTTGGCGCAGAGTTTACCCAACCGCTGCCT
GCTGTGCCACCAAACGGTAATCGAAGGCTCTGGGGTCTGCAGCCTTTGTCTGCAACGCTGTCTGTATCACGGCCCCGTAT
GTCTGGGTTGTGGTCGCAGCCTGGTCAATGACGGTGCCTTTTGTGGTGCCTGTCGGGTGTTGGGCGCGCTGCCTGTTATC
GCGCCCTGCAGCTACCACCAAGGCCTGGGAGCCAGTATTGCCGCCATTAAATATCAGGGGCAATTTGCAGCGCTGGATGT
TCTTTGCCGAGCACTGATGGCCAGAGTGACTCAACTGACAGAGGAGGGCGAAATCCCCCCTGTCTCTTTACTCCTGCCGG
TTCCCCTTCACCCCAAACGTCTCAAAACCCGCGGCTTTAATCAGGCCTATGAAATAGCGCTCTTGCTGTCAAAGCTCAGT
GGTATCCCTCTGTGCGATGACCTGTTACGGCGGCGACGTGATACCCAGCCTCAGGCTGGCCTTACCGGTAAAGCGAGGCG
TAAAAACCTATTGGGCGCCTTTGAGCTCACGGGGAGCTGTCATCAGGGCTCAGTGGCCTTGGTGGACGATGTAGTCACCA
CCGGCAGTACGGCCAATGAAATAGCCACCATGTTACAGCTTCAGGGTGTCAGGGTGCAGGTATGGTGTCTTGCCCGGGCG
GAAGCCCCCGGGCTGCTGGACACGTTCAGTTAG

Upstream 100 bases:

>100_bases
CCGTGGAGAATCACCAGGTTTTTGCCTGTGCCATGGGTGTCGATATGGATATGTGCCTGTGAACCTTGTGTCACTTGTGC
CTCTAGTCAGGGATGATGCC

Downstream 100 bases:

>100_bases
CGGCTCATGGCCGCAGGTAACAGGTAGAGCGCATTGGTGTAGATTTTTTCAGTGCCGAGCCAGATGTTGCGAAACAGCAG
GTTATCGGTTGTTCCCACCA

Product: competence protein ComF

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MDEVSVWRRAWTYVVTTLAQSLPNRCLLCHQTVIEGSGVCSLCLQRCLYHGPVCLGCGRSLVNDGAFCGACRVLGALPVI
APCSYHQGLGASIAAIKYQGQFAALDVLCRALMARVTQLTEEGEIPPVSLLLPVPLHPKRLKTRGFNQAYEIALLLSKLS
GIPLCDDLLRRRRDTQPQAGLTGKARRKNLLGAFELTGSCHQGSVALVDDVVTTGSTANEIATMLQLQGVRVQVWCLARA
EAPGLLDTFS

Sequences:

>Translated_250_residues
MDEVSVWRRAWTYVVTTLAQSLPNRCLLCHQTVIEGSGVCSLCLQRCLYHGPVCLGCGRSLVNDGAFCGACRVLGALPVI
APCSYHQGLGASIAAIKYQGQFAALDVLCRALMARVTQLTEEGEIPPVSLLLPVPLHPKRLKTRGFNQAYEIALLLSKLS
GIPLCDDLLRRRRDTQPQAGLTGKARRKNLLGAFELTGSCHQGSVALVDDVVTTGSTANEIATMLQLQGVRVQVWCLARA
EAPGLLDTFS
>Mature_250_residues
MDEVSVWRRAWTYVVTTLAQSLPNRCLLCHQTVIEGSGVCSLCLQRCLYHGPVCLGCGRSLVNDGAFCGACRVLGALPVI
APCSYHQGLGASIAAIKYQGQFAALDVLCRALMARVTQLTEEGEIPPVSLLLPVPLHPKRLKTRGFNQAYEIALLLSKLS
GIPLCDDLLRRRRDTQPQAGLTGKARRKNLLGAFELTGSCHQGSVALVDDVVTTGSTANEIATMLQLQGVRVQVWCLARA
EAPGLLDTFS

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=227, Percent_Identity=30.3964757709251, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26944; Mature: 26944

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
5.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEVSVWRRAWTYVVTTLAQSLPNRCLLCHQTVIEGSGVCSLCLQRCLYHGPVCLGCGRS
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEECCCHH
LVNDGAFCGACRVLGALPVIAPCSYHQGLGASIAAIKYQGQFAALDVLCRALMARVTQLT
HHCCCCHHHHHHHHHCCCHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
EEGEIPPVSLLLPVPLHPKRLKTRGFNQAYEIALLLSKLSGIPLCDDLLRRRRDTQPQAG
HCCCCCCEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
LTGKARRKNLLGAFELTGSCHQGSVALVDDVVTTGSTANEIATMLQLQGVRVQVWCLARA
CCCHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEEEEC
EAPGLLDTFS
CCCCCCCCCC
>Mature Secondary Structure
MDEVSVWRRAWTYVVTTLAQSLPNRCLLCHQTVIEGSGVCSLCLQRCLYHGPVCLGCGRS
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEECCCHH
LVNDGAFCGACRVLGALPVIAPCSYHQGLGASIAAIKYQGQFAALDVLCRALMARVTQLT
HHCCCCHHHHHHHHHCCCHHCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
EEGEIPPVSLLLPVPLHPKRLKTRGFNQAYEIALLLSKLSGIPLCDDLLRRRRDTQPQAG
HCCCCCCEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
LTGKARRKNLLGAFELTGSCHQGSVALVDDVVTTGSTANEIATMLQLQGVRVQVWCLARA
CCCHHHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCEEEEEEEEEC
EAPGLLDTFS
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]