| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119776614
Identifier: 119776614
GI number: 119776614
Start: 4114217
End: 4114723
Strand: Direct
Name: 119776614
Synonym: Sama_3482
Alternate gene names: NA
Gene position: 4114217-4114723 (Clockwise)
Preceding gene: 119776613
Following gene: 119776615
Centisome position: 95.54
GC content: 54.04
Gene sequence:
>507_bases ATGAACAAGCTGATTGGTAACGCACCCCGTCATCCAGGTTTATGGACAGATTCCGCAGCCAAAGACGTTTGCCCCACATC GCAGGTGATTACCCAAAGCACTCAATCCCAAGGTCGCCAAGAGATGCAACAGCTCGCCCCAGAGCTTGCACGCCTGAGTC TTGAGGGGCGCTGGATAGTGCTTATCAGCCCACCCAATATCGGGCTTAAATCTACGCTGGCCCAGGCGGGTGTGCGCATG GACCGTGTGCTGCTGGTGCATGCCAAAGACGAAGTGGAAACCCTTTGGGCGATGGAGAAAGCGCTAACCAACGGTACCTC AAGTGCCGTGCTGTGTTGGACCAACGAACTGGATCCCAGAGATAAACGCAGATTGGCACTGGTAGCCAAAAATGCCGTGG CACTGGGTGTTATTTTTGAAAATGTAAATGCTCACTCACATGCCAGCGCTTTTGCTGTCAGACCCGAGTTAAGCCATACC CTTCGCGGTGCATCACCGCTGCACTGA
Upstream 100 bases:
>100_bases CAGAGAACGAGGCATTCGCTCCTATCAGAGTGGATCTTGCCAACCAGAGTCTCACCATCGAGGGCTTGGCTGTGGGCGTT ATCCGTAATGGAGACTGGCT
Downstream 100 bases:
>100_bases TCACCTCTTCATCCCTTTAAGCCCCTTTATCGGGGCTTTTTTTCGATAATTTTTTCAGATAATTAGAAAATAAAGTGATC TTGATCAATATTTAAACTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 168; Mature: 168
Protein sequence:
>168_residues MNKLIGNAPRHPGLWTDSAAKDVCPTSQVITQSTQSQGRQEMQQLAPELARLSLEGRWIVLISPPNIGLKSTLAQAGVRM DRVLLVHAKDEVETLWAMEKALTNGTSSAVLCWTNELDPRDKRRLALVAKNAVALGVIFENVNAHSHASAFAVRPELSHT LRGASPLH
Sequences:
>Translated_168_residues MNKLIGNAPRHPGLWTDSAAKDVCPTSQVITQSTQSQGRQEMQQLAPELARLSLEGRWIVLISPPNIGLKSTLAQAGVRM DRVLLVHAKDEVETLWAMEKALTNGTSSAVLCWTNELDPRDKRRLALVAKNAVALGVIFENVNAHSHASAFAVRPELSHT LRGASPLH >Mature_168_residues MNKLIGNAPRHPGLWTDSAAKDVCPTSQVITQSTQSQGRQEMQQLAPELARLSLEGRWIVLISPPNIGLKSTLAQAGVRM DRVLLVHAKDEVETLWAMEKALTNGTSSAVLCWTNELDPRDKRRLALVAKNAVALGVIFENVNAHSHASAFAVRPELSHT LRGASPLH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18313; Mature: 18313
Theoretical pI: Translated: 9.46; Mature: 9.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKLIGNAPRHPGLWTDSAAKDVCPTSQVITQSTQSQGRQEMQQLAPELARLSLEGRWIV CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE LISPPNIGLKSTLAQAGVRMDRVLLVHAKDEVETLWAMEKALTNGTSSAVLCWTNELDPR EECCCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC DKRRLALVAKNAVALGVIFENVNAHSHASAFAVRPELSHTLRGASPLH CHHEEHEEECCCEEEEEEEECCCCCCCCCEEEECCCHHHHHCCCCCCC >Mature Secondary Structure MNKLIGNAPRHPGLWTDSAAKDVCPTSQVITQSTQSQGRQEMQQLAPELARLSLEGRWIV CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE LISPPNIGLKSTLAQAGVRMDRVLLVHAKDEVETLWAMEKALTNGTSSAVLCWTNELDPR EECCCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC DKRRLALVAKNAVALGVIFENVNAHSHASAFAVRPELSHTLRGASPLH CHHEEHEEECCCEEEEEEEECCCCCCCCCEEEECCCHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA