| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119776569
Identifier: 119776569
GI number: 119776569
Start: 4068658
End: 4069269
Strand: Direct
Name: 119776569
Synonym: Sama_3437
Alternate gene names: NA
Gene position: 4068658-4069269 (Clockwise)
Preceding gene: 119776568
Following gene: 119776570
Centisome position: 94.48
GC content: 60.29
Gene sequence:
>612_bases ATGAAACTCTTACCCGTCTTGCTCGCGGCAGGTGGCTCGCGCCGCTTCGAAGGGGTCAAGCTCGCTATGCCGCTGCCTGG TGGCACCACCTTACTTGGCCGCAGCTTTAACGCGTTGAGCCAGGTGCGCAGCAGCTGCGATACCCAGATCCTGCCGGTGC AGGTATGCCTCGGTGGCCACGGCGCCACATTAAGGCAACTTTTACCCAAGGATACCGCCATTATCCCCTCCCCCGATTGG CAGCTGGGGCTTGGCCACAGTATTGCCACAGCCGCGAAAGCGGCGCTCGGCACAGACGCCGACGCCTTGCTGCTGGCACT GGCCGACCACGCGCTATTGAGCTCTGAAGACTATGAGTCCCTTATCCAAAGTTGGCAGGAGTCCGGTAAAACCACCGCCT CCTGGTATCTGGATGCCCCCGGTGCACCGGCGATTTTCAACCGTGCCGACTTTGGTGAGCTGACCCGTCTCAGCGGCGAC AGAGGCGCCAAGGGGATTTTGAAATCTTTGCAAAAACAACAACAACTGGGATGGATGGCGCTACCCGGCGCCAGCATCGA TATAGACACCCGCGCCGATTTCGGGCGCTTCGTGAGCACAAGGAGCGAGTGA
Upstream 100 bases:
>100_bases AACTGCCGGCGGATATAGCCCTGTCTATCCTCGCCGCCTGCCAGGCGAGCCTGTTCGGCAAAAGCTCGTCCGTTGGCAAA TTCAAAAGCGGAGGCCTTGC
Downstream 100 bases:
>100_bases CCCATGACATCACTTAAAATCAACGGCCGTTTGTTCACCCTGGACGCCGACCCCAAGATGCCGCTCCTGTGGGCGCTCCG GGATCTGATGGGGTTAACCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MKLLPVLLAAGGSRRFEGVKLAMPLPGGTTLLGRSFNALSQVRSSCDTQILPVQVCLGGHGATLRQLLPKDTAIIPSPDW QLGLGHSIATAAKAALGTDADALLLALADHALLSSEDYESLIQSWQESGKTTASWYLDAPGAPAIFNRADFGELTRLSGD RGAKGILKSLQKQQQLGWMALPGASIDIDTRADFGRFVSTRSE
Sequences:
>Translated_203_residues MKLLPVLLAAGGSRRFEGVKLAMPLPGGTTLLGRSFNALSQVRSSCDTQILPVQVCLGGHGATLRQLLPKDTAIIPSPDW QLGLGHSIATAAKAALGTDADALLLALADHALLSSEDYESLIQSWQESGKTTASWYLDAPGAPAIFNRADFGELTRLSGD RGAKGILKSLQKQQQLGWMALPGASIDIDTRADFGRFVSTRSE >Mature_203_residues MKLLPVLLAAGGSRRFEGVKLAMPLPGGTTLLGRSFNALSQVRSSCDTQILPVQVCLGGHGATLRQLLPKDTAIIPSPDW QLGLGHSIATAAKAALGTDADALLLALADHALLSSEDYESLIQSWQESGKTTASWYLDAPGAPAIFNRADFGELTRLSGD RGAKGILKSLQKQQQLGWMALPGASIDIDTRADFGRFVSTRSE
Specific function: Unknown
COG id: COG2068
COG function: function code R; Uncharacterized MobA-related protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21484; Mature: 21484
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLLPVLLAAGGSRRFEGVKLAMPLPGGTTLLGRSFNALSQVRSSCDTQILPVQVCLGGH CCHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHCCCCEEEEEEEECCC GATLRQLLPKDTAIIPSPDWQLGLGHSIATAAKAALGTDADALLLALADHALLSSEDYES CHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHH LIQSWQESGKTTASWYLDAPGAPAIFNRADFGELTRLSGDRGAKGILKSLQKQQQLGWMA HHHHHHHCCCEEEEEEEECCCCCHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCEEE LPGASIDIDTRADFGRFVSTRSE CCCCCEECCCCHHHHHHHHCCCC >Mature Secondary Structure MKLLPVLLAAGGSRRFEGVKLAMPLPGGTTLLGRSFNALSQVRSSCDTQILPVQVCLGGH CCHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHCCHHHHHHHHHHCCCCEEEEEEEECCC GATLRQLLPKDTAIIPSPDWQLGLGHSIATAAKAALGTDADALLLALADHALLSSEDYES CHHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHH LIQSWQESGKTTASWYLDAPGAPAIFNRADFGELTRLSGDRGAKGILKSLQKQQQLGWMA HHHHHHHCCCEEEEEEEECCCCCHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCEEE LPGASIDIDTRADFGRFVSTRSE CCCCCEECCCCHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA