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The map label for this gene is rbn [C]

Identifier: 119776536

GI number: 119776536

Start: 4030230

End: 4031141

Strand: Reverse

Name: rbn [C]

Synonym: Sama_3404

Alternate gene names: 119776536

Gene position: 4031141-4030230 (Counterclockwise)

Preceding gene: 119776539

Following gene: 119776535

Centisome position: 93.61

GC content: 53.18

Gene sequence:

>912_bases
GTGCTCCATCTTGTCTCTCGCCTGAAAGAAGACCAAATTAATGTGCGCGCAGGGCACCTTACCTATGTCACCCTCTTGTC
GCTGGTGCCCATGGTGGCCGTGACCATGTCGGTATTATCGGCATTCCCGGTGTTTCAGGGTATTCGCGGCACCATAGAAA
CCTTCGTGTATGAAAACATGATCCCCGCCGCCGGTGACACGGTACAAACCTATATCAACGAATTTGTGAAAAACGCCTCC
AAAGGCACGGCCGTGGGGATTGGTTTTCTGGTGGTAGTGGCCATCATGTTGATTTCGGCCATCGATAAGTCACTCAATGC
CATTTGGCGCACCAAAGAAAAGCGCCGTTTTATGGTGGCCTTTTCCATGTACTGGATGGTGTTGACCCTGGGCCCTGTGC
TGATGGGGGCCAGTATTGCCGTGACGTCTTATCTGGTATCCCTGAAAGTACTCAGTGAGGCTGATGTGTATGGGGTGGTG
CCCATGCTGATAGAGAAGCTGCCGCTGATGTTTTCTGTTGCAGCATTTTTGCTGCTGTATATGGCGGTGCCCAATCAAAA
GGTGAAATTTCTCCATGCGCTGCTCGGTGCCCTGGTGGCAGCCTTGTTGTTTGAGGCCGGTAAGCGTGGTTTTGCCCTTT
ATGTCACCACCTTTCCGAGTTATGAGGCCATTTACGGCACCCTGGCGACCATTCCCATCCTCTTTGTCTGGGTGTATCTC
TCCTGGACCATAGTGCTCTTTGGCGGTGTGATTGCCGCAGCGCTGCCTGAATATCTGGACTATGATGACGGCGGCGACGA
AGACGCCCAGGGCTGCCAGGATGCCCCTTCGGGTGAAGCCTTGTCATCGCCAAAGGAAAATCCTTCCTCTTCATCCTCCA
CCAAACCCAAAACCGACAATGACCCGGGTTGA

Upstream 100 bases:

>100_bases
AACATAAACCGTACCTGTGATAAGCGGCAAGAGAAAACCAGTGAAAAATAAGATAGATGTGAGCCTGATACAGAGCTTTT
TTCTGGGGGTTTGGCGATTT

Downstream 100 bases:

>100_bases
ACAGGCACCGCCGCCGCTCATCAGCAGCAAGTGGATTGCCGTTGGTGATGGTCATAGTCTGCATTTGGCGGAGTATGGCA
ATCCCAATGGCGTTCCACTT

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MLHLVSRLKEDQINVRAGHLTYVTLLSLVPMVAVTMSVLSAFPVFQGIRGTIETFVYENMIPAAGDTVQTYINEFVKNAS
KGTAVGIGFLVVVAIMLISAIDKSLNAIWRTKEKRRFMVAFSMYWMVLTLGPVLMGASIAVTSYLVSLKVLSEADVYGVV
PMLIEKLPLMFSVAAFLLLYMAVPNQKVKFLHALLGALVAALLFEAGKRGFALYVTTFPSYEAIYGTLATIPILFVWVYL
SWTIVLFGGVIAAALPEYLDYDDGGDEDAQGCQDAPSGEALSSPKENPSSSSSTKPKTDNDPG

Sequences:

>Translated_303_residues
MLHLVSRLKEDQINVRAGHLTYVTLLSLVPMVAVTMSVLSAFPVFQGIRGTIETFVYENMIPAAGDTVQTYINEFVKNAS
KGTAVGIGFLVVVAIMLISAIDKSLNAIWRTKEKRRFMVAFSMYWMVLTLGPVLMGASIAVTSYLVSLKVLSEADVYGVV
PMLIEKLPLMFSVAAFLLLYMAVPNQKVKFLHALLGALVAALLFEAGKRGFALYVTTFPSYEAIYGTLATIPILFVWVYL
SWTIVLFGGVIAAALPEYLDYDDGGDEDAQGCQDAPSGEALSSPKENPSSSSSTKPKTDNDPG
>Mature_303_residues
MLHLVSRLKEDQINVRAGHLTYVTLLSLVPMVAVTMSVLSAFPVFQGIRGTIETFVYENMIPAAGDTVQTYINEFVKNAS
KGTAVGIGFLVVVAIMLISAIDKSLNAIWRTKEKRRFMVAFSMYWMVLTLGPVLMGASIAVTSYLVSLKVLSEADVYGVV
PMLIEKLPLMFSVAAFLLLYMAVPNQKVKFLHALLGALVAALLFEAGKRGFALYVTTFPSYEAIYGTLATIPILFVWVYL
SWTIVLFGGVIAAALPEYLDYDDGGDEDAQGCQDAPSGEALSSPKENPSSSSSTKPKTDNDPG

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=265, Percent_Identity=49.0566037735849, Blast_Score=261, Evalue=5e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32873; Mature: 32873

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHLVSRLKEDQINVRAGHLTYVTLLSLVPMVAVTMSVLSAFPVFQGIRGTIETFVYENM
CCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IPAAGDTVQTYINEFVKNASKGTAVGIGFLVVVAIMLISAIDKSLNAIWRTKEKRRFMVA
CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSMYWMVLTLGPVLMGASIAVTSYLVSLKVLSEADVYGVVPMLIEKLPLMFSVAAFLLLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
MAVPNQKVKFLHALLGALVAALLFEAGKRGFALYVTTFPSYEAIYGTLATIPILFVWVYL
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
SWTIVLFGGVIAAALPEYLDYDDGGDEDAQGCQDAPSGEALSSPKENPSSSSSTKPKTDN
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DPG
CCC
>Mature Secondary Structure
MLHLVSRLKEDQINVRAGHLTYVTLLSLVPMVAVTMSVLSAFPVFQGIRGTIETFVYENM
CCHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
IPAAGDTVQTYINEFVKNASKGTAVGIGFLVVVAIMLISAIDKSLNAIWRTKEKRRFMVA
CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSMYWMVLTLGPVLMGASIAVTSYLVSLKVLSEADVYGVVPMLIEKLPLMFSVAAFLLLY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
MAVPNQKVKFLHALLGALVAALLFEAGKRGFALYVTTFPSYEAIYGTLATIPILFVWVYL
HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
SWTIVLFGGVIAAALPEYLDYDDGGDEDAQGCQDAPSGEALSSPKENPSSSSSTKPKTDN
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DPG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA