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The map label for this gene is rpfG [H]

Identifier: 119776528

GI number: 119776528

Start: 4023806

End: 4024936

Strand: Reverse

Name: rpfG [H]

Synonym: Sama_3396

Alternate gene names: 119776528

Gene position: 4024936-4023806 (Counterclockwise)

Preceding gene: 119776530

Following gene: 119776505

Centisome position: 93.47

GC content: 52.7

Gene sequence:

>1131_bases
ATGTTCAATTCTGCCATGGCTATTCCTGCCATTTGGTGGCAACAGGGAAGTAGTGCCAGTGACCGCCTCGCCCGCATCCA
CGACCGCCTGCTGGAGGCGTACCCAGAGGTCGACCGTATAGCCTGCGCACTCTACGATCCCAATACCGATTTGCTGAAGA
CCTTTATCAACAGTACCCGCAGAGGCGAAGCCATTCACGGCTACCAATATCGTCTGAAAGACAGCCTGTCTTTAAGTGAA
TTGGCCAGCGCTGCCGAGTGTCGGGTGATCCACAATATTCACGCGACGGTAGCACCAGACAATCCTCACTCGGTGTGGCT
ATTGCAGCAGGGATACCAATCCTCTTTTACGATCCCTTTGTACGACAATGGCCATTTTATTGGATTTCTGTTTTTTGATT
CTTCCCGGCTGGGCGCCTTTGATACCCGGAAACAGCGGGACATGTTGTTATATGCCAATCTGGTCAATATGACCCTGAGC
AGCGAGCTCAACGCGGTGCGTATCATTCAGGCATCGGCTCTGGTGGCCCGCGACTTTGCCGATTTACGTGACTTCGAAAC
CGGTTCGCATTTAGACAGAATGGCTGCTTATTCCAGGTTGATTGCCAGATTTATAGCGGATGAAGAAGGGCTCAGTGATG
AGCAAATTGAGCATATTGCGCTGTTTGCTCCGCTCCATGATGTGGGCAAAATTGGGATCCCGGACCGTGTACTTCTTAAA
GCCGGAACCCTGGATGCTGATGAGCGAGCCCTGATGCAAACCCACGTAGAAAAGGGCGAAAAGATCATCCACAAGATTTT
GGGTGACTTTGGCTTAAGTGAGGTACCCGATTCGCAGATCATGCTGAATATTGTGGCGTGTCATCACGAGTATCTGGATG
GCAGCGGTTATCCCCGAGGGTTAAAGAGCAACGCGATACCCATTGAAGCCAGAATCGTCACAGTGGCCGATATCTTTGAT
GCCTTAAGTTGCCAACGCCCCTATAAAGCCGCCTGGCCACTGGCGGCGTGCTTTGATGAGCTGGAGCGCATGGTGGCAGC
AGGTAAATTGGAGGGACGCTGTGTGGCGGCGCTGAAGGCATCACGCCAGGAAATAGAAGACATCATGGCGCGCCTGCGCG
ACGCGCCATGA

Upstream 100 bases:

>100_bases
TTATCGTGACAGAGCGCTCTTTTTTGGCATTGAACAGGCCCGTCCTATGGACTGCGTCCTATAGTTATTCTGTGAGTTCG
TTCTCTACAGGGATTGGTAT

Downstream 100 bases:

>100_bases
CAGCGTTCAGTAATATTGTGCCAGCGCTTTTTTGGTGTGCTTGGCGACTTTTTTGAAAGGGCTGAGGGTCAGCTTTTGCA
GCAGGGGTTTGTATTTTTCG

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MFNSAMAIPAIWWQQGSSASDRLARIHDRLLEAYPEVDRIACALYDPNTDLLKTFINSTRRGEAIHGYQYRLKDSLSLSE
LASAAECRVIHNIHATVAPDNPHSVWLLQQGYQSSFTIPLYDNGHFIGFLFFDSSRLGAFDTRKQRDMLLYANLVNMTLS
SELNAVRIIQASALVARDFADLRDFETGSHLDRMAAYSRLIARFIADEEGLSDEQIEHIALFAPLHDVGKIGIPDRVLLK
AGTLDADERALMQTHVEKGEKIIHKILGDFGLSEVPDSQIMLNIVACHHEYLDGSGYPRGLKSNAIPIEARIVTVADIFD
ALSCQRPYKAAWPLAACFDELERMVAAGKLEGRCVAALKASRQEIEDIMARLRDAP

Sequences:

>Translated_376_residues
MFNSAMAIPAIWWQQGSSASDRLARIHDRLLEAYPEVDRIACALYDPNTDLLKTFINSTRRGEAIHGYQYRLKDSLSLSE
LASAAECRVIHNIHATVAPDNPHSVWLLQQGYQSSFTIPLYDNGHFIGFLFFDSSRLGAFDTRKQRDMLLYANLVNMTLS
SELNAVRIIQASALVARDFADLRDFETGSHLDRMAAYSRLIARFIADEEGLSDEQIEHIALFAPLHDVGKIGIPDRVLLK
AGTLDADERALMQTHVEKGEKIIHKILGDFGLSEVPDSQIMLNIVACHHEYLDGSGYPRGLKSNAIPIEARIVTVADIFD
ALSCQRPYKAAWPLAACFDELERMVAAGKLEGRCVAALKASRQEIEDIMARLRDAP
>Mature_376_residues
MFNSAMAIPAIWWQQGSSASDRLARIHDRLLEAYPEVDRIACALYDPNTDLLKTFINSTRRGEAIHGYQYRLKDSLSLSE
LASAAECRVIHNIHATVAPDNPHSVWLLQQGYQSSFTIPLYDNGHFIGFLFFDSSRLGAFDTRKQRDMLLYANLVNMTLS
SELNAVRIIQASALVARDFADLRDFETGSHLDRMAAYSRLIARFIADEEGLSDEQIEHIALFAPLHDVGKIGIPDRVLLK
AGTLDADERALMQTHVEKGEKIIHKILGDFGLSEVPDSQIMLNIVACHHEYLDGSGYPRGLKSNAIPIEARIVTVADIFD
ALSCQRPYKAAWPLAACFDELERMVAAGKLEGRCVAALKASRQEIEDIMARLRDAP

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 41969; Mature: 41969

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNSAMAIPAIWWQQGSSASDRLARIHDRLLEAYPEVDRIACALYDPNTDLLKTFINSTR
CCCCCEECCHHEECCCCCHHHHHHHHHHHHHHHCCCHHHEEEEEECCCHHHHHHHHHCCC
RGEAIHGYQYRLKDSLSLSELASAAECRVIHNIHATVAPDNPHSVWLLQQGYQSSFTIPL
CCCCCCCCCEECCCCCCHHHHHHHHHHHEEEEEEEEECCCCCCEEEEEECCCCCCEEEEE
YDNGHFIGFLFFDSSRLGAFDTRKQRDMLLYANLVNMTLSSELNAVRIIQASALVARDFA
ECCCCEEEEEEECCCCCCCCCCHHHCCCEEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
DLRDFETGSHLDRMAAYSRLIARFIADEEGLSDEQIEHIALFAPLHDVGKIGIPDRVLLK
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEECCHHHHCCCCCCCCEEEE
AGTLDADERALMQTHVEKGEKIIHKILGDFGLSEVPDSQIMLNIVACHHEYLDGSGYPRG
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
LKSNAIPIEARIVTVADIFDALSCQRPYKAAWPLAACFDELERMVAAGKLEGRCVAALKA
CCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
SRQEIEDIMARLRDAP
HHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFNSAMAIPAIWWQQGSSASDRLARIHDRLLEAYPEVDRIACALYDPNTDLLKTFINSTR
CCCCCEECCHHEECCCCCHHHHHHHHHHHHHHHCCCHHHEEEEEECCCHHHHHHHHHCCC
RGEAIHGYQYRLKDSLSLSELASAAECRVIHNIHATVAPDNPHSVWLLQQGYQSSFTIPL
CCCCCCCCCEECCCCCCHHHHHHHHHHHEEEEEEEEECCCCCCEEEEEECCCCCCEEEEE
YDNGHFIGFLFFDSSRLGAFDTRKQRDMLLYANLVNMTLSSELNAVRIIQASALVARDFA
ECCCCEEEEEEECCCCCCCCCCHHHCCCEEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHH
DLRDFETGSHLDRMAAYSRLIARFIADEEGLSDEQIEHIALFAPLHDVGKIGIPDRVLLK
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHEECCHHHHCCCCCCCCEEEE
AGTLDADERALMQTHVEKGEKIIHKILGDFGLSEVPDSQIMLNIVACHHEYLDGSGYPRG
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
LKSNAIPIEARIVTVADIFDALSCQRPYKAAWPLAACFDELERMVAAGKLEGRCVAALKA
CCCCCCEEEEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH
SRQEIEDIMARLRDAP
HHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]