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The map label for this gene is ybfF [C]

Identifier: 119776516

GI number: 119776516

Start: 4010493

End: 4012151

Strand: Direct

Name: ybfF [C]

Synonym: Sama_3384

Alternate gene names: 119776516

Gene position: 4010493-4012151 (Clockwise)

Preceding gene: 119776515

Following gene: 119776517

Centisome position: 93.13

GC content: 57.81

Gene sequence:

>1659_bases
ATGCGCGTTGCCATAATCATCCCCAATTACAATCATACCCATGCCATCGAGCGCACTCTGGAAACGCTGGAGCCTTTGGG
GCTGCCGGTGTTTCTGGTCAACGATGGCAGCAACGAGGCTACCTGTCATCTACTGATGGTCCTCGACGCCAAATACCCCT
GGGTCACCCTGCTGCACCACCCCTTTAACCGGGGTAAGGGCGCTGCGGTAATGACCGGCCTGCGTGCAGCCTACAAAGCG
GGCTTCAGCCATGCGCTGCAGGTGGATGCCGATGGTCAGCACACCCTCGATGACATTCCAACACTGTTAAGTGCCGCCAA
CGAGCACCCCGAGGCGGTGATTTCAGGTCGTCCCCAGTACGATGACTCTGTGCCCAAGGGTCGCCTCTATGGCCGCTATA
TCACCCATTTCTGGGTGTGGGTCGAGACCTTGAGTTTTGATATTCAGGACAGCATGTGCGGCTTTCGGGTCTATCCGCTG
AAGGCCACCGAGGCACTGTTTTTAAGTGAACAGCTTGGCGAGCGCATGGACTTCGATATCGAAGTGCTGGTCAAGCTTTA
CTGGCGCGGCGTTGACGTGATTCACGTGCCCACGGCGGTGATTTACCCCGAAGACGGTGTCAGCCATTTTCAGGGCTTTG
CCGACAACGTGCGCATCAGCGCCCTGCACACCAGACTCTTTTTCGGCATGCTCAAACGCCTGCCAAGCCTGCTTGGCCGG
GGCAGAAAGCAAACCCACTGGTCGTCCATCAGCGAGCGTGGCAGCTATTGGGGCATCAAGCTTTTGGCCGAGAGCTACCG
CTTCGGAGGCCATTGGCTGTGCCGCGCCATCATGTACCCCGTGATTGCCTATTTCTTTATGACCGGCGGCGCTGCCCGCA
AGGCCTCGATTGAGTTTCTGGAGCGGGTGCAGGCACTGGAGCCAAATCATCCCCAGCTGCAGCCAAGGGTCAGTTGGCGC
CACAGCCTTAAGCACTTCCTCGCCTTTGGCAATGCCGCACTCGACCGAATCGACGCCTGGTGCGACCGCATCAAACTGAG
CGAAGTCGATTTCCCCGAGCGGGCACTGCTGGCGGATATGCTCACCCGAGGCCAGGGCGGCGTGCTGCTGGTATCCCACC
TTGGTAACCTCGAGCTTTGCCGCGCCATTTCCATCCACCAGCGCAAGGTAAAAGTGAACGTGATGGTGATGACCGCCAAC
GCCGAAAACTTCAACAAGGTGCTGAAGCAGCTAAACCCAGACAGCGACCTAAACCTCATTCATATCAATGAGCTGGACCC
ATCTACCTCTATCATGCTGGCAGACAAAATTGCCGCAGGTGAACTGGTGGTAATAGCCGGGGATCGCACCGCCAGTGGCA
ATGCAGGCCGGGTTGTCGAAGTGCCCTTCCTTGGCGAAACGGCGCCTTTCCCACAAGGGCCCTTTATTCTGGCAAGCCTG
CTCGATTGCCCGGTATTTCTGATGTTTTGCCTGCGGGAGCAGGGCCGCTACCGGGTGCATGTGGAGCCCTTTGCCGACAC
CCTCAAGGGCCCCAGAGCCGGCAGAAGTGAACGTATTCAAAACGCGGTCGAACGCTATGCTGAAAGGCTTGAGCACTACG
CCCGCAAAGAGCCACTGCAGTGGTTCAACTTTTTCGATTTTTGGCGCCGCGGCCAATAA

Upstream 100 bases:

>100_bases
GCAACAACGCCGCCAAGGGCAAACTCACCTTCGCTTACAGTGATGGTGAGCGCCGATTCGGCTCAGGTCGGATAGTGATT
GCCGCGCACGGGGACAGCTG

Downstream 100 bases:

>100_bases
GGCTTTAGGCCCGGGCAGACGCCACAGGAACGGTAAAATGACTAACCAATCAACTGAAATGAAAGAGACTGTTAAGTTTG
GCTACGGCGCACTGACCATA

Product: glycosyl transferase, group 2 family protein

Products: NA

Alternate protein names: Lipid A Biosynthesis Acyltransferase; Acyltransferase; Glycosyl Transferase Group 2 Family Protein; Glycosyltransferase; Glycosyl Transferase; Dolichyl-Phosphate Mannose Synthase; Glycosyl Transferase Group 2 Family; Dolichol-Phosphate Mannosyltransferase; Dolichyl-Phosphate Beta-D-Mannosyltransferase; Family 2 Glycosyl Transferase; Transmembrane Family-2 Glycosyl Transferase; Acetyltransferase; B-Glycosyltransferase Glycosyltransferase Family 2 Protein; Glycosyltransferase Involved In Cell Wall Biogenesis; Lipid IVA Acyltransferase Family Protein; Glycosyltransferase/Dolichyl-Phosphate Mannose Synthase; Glycosyl Transferase Family 2 And Acyltransferase Domains; Glycosyl Transferase GT2 Family; Polyprenyl-Phosphate Beta-D-Mannosyltransferase; Apolipo; Acyltransferase-Like Protein; Lipid A Biosynthesis Acyltransferase Family; Bacterial Lipid A Biosynthesis Acyltransferase Family; Family 2 Glycosyl Transferase Protein; Oligosaccharide Acyltransferase Family Protein; B-Glycosyltransferase; Dolichyl-Phosphate Mannose Synthase Related Protein; Bifunctional Glycosyl Transferase/Acyl Transferase; Glycosyl Transferase Gt2J; Dolichyl-Phosphate Mannose Synthase-Like Protein; XanthomoNADin Biosynthesis Acyltransferase Protein; Glycosyl Transferase Domain-Containing Protein

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MRVAIIIPNYNHTHAIERTLETLEPLGLPVFLVNDGSNEATCHLLMVLDAKYPWVTLLHHPFNRGKGAAVMTGLRAAYKA
GFSHALQVDADGQHTLDDIPTLLSAANEHPEAVISGRPQYDDSVPKGRLYGRYITHFWVWVETLSFDIQDSMCGFRVYPL
KATEALFLSEQLGERMDFDIEVLVKLYWRGVDVIHVPTAVIYPEDGVSHFQGFADNVRISALHTRLFFGMLKRLPSLLGR
GRKQTHWSSISERGSYWGIKLLAESYRFGGHWLCRAIMYPVIAYFFMTGGAARKASIEFLERVQALEPNHPQLQPRVSWR
HSLKHFLAFGNAALDRIDAWCDRIKLSEVDFPERALLADMLTRGQGGVLLVSHLGNLELCRAISIHQRKVKVNVMVMTAN
AENFNKVLKQLNPDSDLNLIHINELDPSTSIMLADKIAAGELVVIAGDRTASGNAGRVVEVPFLGETAPFPQGPFILASL
LDCPVFLMFCLREQGRYRVHVEPFADTLKGPRAGRSERIQNAVERYAERLEHYARKEPLQWFNFFDFWRRGQ

Sequences:

>Translated_552_residues
MRVAIIIPNYNHTHAIERTLETLEPLGLPVFLVNDGSNEATCHLLMVLDAKYPWVTLLHHPFNRGKGAAVMTGLRAAYKA
GFSHALQVDADGQHTLDDIPTLLSAANEHPEAVISGRPQYDDSVPKGRLYGRYITHFWVWVETLSFDIQDSMCGFRVYPL
KATEALFLSEQLGERMDFDIEVLVKLYWRGVDVIHVPTAVIYPEDGVSHFQGFADNVRISALHTRLFFGMLKRLPSLLGR
GRKQTHWSSISERGSYWGIKLLAESYRFGGHWLCRAIMYPVIAYFFMTGGAARKASIEFLERVQALEPNHPQLQPRVSWR
HSLKHFLAFGNAALDRIDAWCDRIKLSEVDFPERALLADMLTRGQGGVLLVSHLGNLELCRAISIHQRKVKVNVMVMTAN
AENFNKVLKQLNPDSDLNLIHINELDPSTSIMLADKIAAGELVVIAGDRTASGNAGRVVEVPFLGETAPFPQGPFILASL
LDCPVFLMFCLREQGRYRVHVEPFADTLKGPRAGRSERIQNAVERYAERLEHYARKEPLQWFNFFDFWRRGQ
>Mature_552_residues
MRVAIIIPNYNHTHAIERTLETLEPLGLPVFLVNDGSNEATCHLLMVLDAKYPWVTLLHHPFNRGKGAAVMTGLRAAYKA
GFSHALQVDADGQHTLDDIPTLLSAANEHPEAVISGRPQYDDSVPKGRLYGRYITHFWVWVETLSFDIQDSMCGFRVYPL
KATEALFLSEQLGERMDFDIEVLVKLYWRGVDVIHVPTAVIYPEDGVSHFQGFADNVRISALHTRLFFGMLKRLPSLLGR
GRKQTHWSSISERGSYWGIKLLAESYRFGGHWLCRAIMYPVIAYFFMTGGAARKASIEFLERVQALEPNHPQLQPRVSWR
HSLKHFLAFGNAALDRIDAWCDRIKLSEVDFPERALLADMLTRGQGGVLLVSHLGNLELCRAISIHQRKVKVNVMVMTAN
AENFNKVLKQLNPDSDLNLIHINELDPSTSIMLADKIAAGELVVIAGDRTASGNAGRVVEVPFLGETAPFPQGPFILASL
LDCPVFLMFCLREQGRYRVHVEPFADTLKGPRAGRSERIQNAVERYAERLEHYARKEPLQWFNFFDFWRRGQ

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62500; Mature: 62500

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVAIIIPNYNHTHAIERTLETLEPLGLPVFLVNDGSNEATCHLLMVLDAKYPWVTLLHH
CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCCCEEEEEEC
PFNRGKGAAVMTGLRAAYKAGFSHALQVDADGQHTLDDIPTLLSAANEHPEAVISGRPQY
CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHCCCCCCC
DDSVPKGRLYGRYITHFWVWVETLSFDIQDSMCGFRVYPLKATEALFLSEQLGERMDFDI
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCH
EVLVKLYWRGVDVIHVPTAVIYPEDGVSHFQGFADNVRISALHTRLFFGMLKRLPSLLGR
HHHHHHHHCCCEEEEECEEEEECCCCHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCC
GRKQTHWSSISERGSYWGIKLLAESYRFGGHWLCRAIMYPVIAYFFMTGGAARKASIEFL
CCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
ERVQALEPNHPQLQPRVSWRHSLKHFLAFGNAALDRIDAWCDRIKLSEVDFPERALLADM
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
LTRGQGGVLLVSHLGNLELCRAISIHQRKVKVNVMVMTANAENFNKVLKQLNPDSDLNLI
HHCCCCCEEEEECCCCHHHHHHHHHHCEEEEEEEEEEEECCHHHHHHHHHCCCCCCCEEE
HINELDPSTSIMLADKIAAGELVVIAGDRTASGNAGRVVEVPFLGETAPFPQGPFILASL
EEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHH
LDCPVFLMFCLREQGRYRVHVEPFADTLKGPRAGRSERIQNAVERYAERLEHYARKEPLQ
HHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
WFNFFDFWRRGQ
HHHHHHHHHCCC
>Mature Secondary Structure
MRVAIIIPNYNHTHAIERTLETLEPLGLPVFLVNDGSNEATCHLLMVLDAKYPWVTLLHH
CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEECCCCEEEEEEC
PFNRGKGAAVMTGLRAAYKAGFSHALQVDADGQHTLDDIPTLLSAANEHPEAVISGRPQY
CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHCCCCCCHHCCCCCCC
DDSVPKGRLYGRYITHFWVWVETLSFDIQDSMCGFRVYPLKATEALFLSEQLGERMDFDI
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCH
EVLVKLYWRGVDVIHVPTAVIYPEDGVSHFQGFADNVRISALHTRLFFGMLKRLPSLLGR
HHHHHHHHCCCEEEEECEEEEECCCCHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHCC
GRKQTHWSSISERGSYWGIKLLAESYRFGGHWLCRAIMYPVIAYFFMTGGAARKASIEFL
CCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
ERVQALEPNHPQLQPRVSWRHSLKHFLAFGNAALDRIDAWCDRIKLSEVDFPERALLADM
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
LTRGQGGVLLVSHLGNLELCRAISIHQRKVKVNVMVMTANAENFNKVLKQLNPDSDLNLI
HHCCCCCEEEEECCCCHHHHHHHHHHCEEEEEEEEEEEECCHHHHHHHHHCCCCCCCEEE
HINELDPSTSIMLADKIAAGELVVIAGDRTASGNAGRVVEVPFLGETAPFPQGPFILASL
EEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHH
LDCPVFLMFCLREQGRYRVHVEPFADTLKGPRAGRSERIQNAVERYAERLEHYARKEPLQ
HHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
WFNFFDFWRRGQ
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA